data_2PKR
#
_model_server_result.job_id            HbkFXRVnIDux1GVNLxZE8g 
_model_server_result.datetime_utc      '2024-11-04 22:51:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pkr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":379}' 
#
_entry.id    2PKR 
#
_exptl.entry_id    2PKR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.04 
_cell.angle_gamma         90 
_cell.entry_id            2PKR 
_cell.length_a            105.377 
_cell.length_b            217.707 
_cell.length_c            114.793 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PKR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
? tetrameric 4 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,GB 1 1 
E,F,G,H,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 2 1 
I,J,K,L,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,HB,IB,JB,KB 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 P N N 
? 3 T N N 
? 3 X N N 
? 3 CA N N 
? 3 GA N N 
? 3 KA N N 
? 3 NA N N 
? 3 QA N N 
? 3 UA N N 
? 3 YA N N 
? 3 BB N N 
? 3 FB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 O CYS 200 1_555 B SG CYS 203 R CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf2 C SG CYS 203 P CYS 200 1_555 D SG CYS 203 Q CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf3 E SG CYS 203 A CYS 200 1_555 F SG CYS 203 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf4 G SG CYS 203 C CYS 200 1_555 H SG CYS 203 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf5 I SG CYS 203 H CYS 200 1_555 J SG CYS 203 I CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf6 K SG CYS 203 L CYS 200 1_555 L SG CYS 203 M CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     2PKR 
_atom_sites.fract_transf_matrix[1][1]    0.00949 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 SO4 O 1 363 347 SO4 SO4 . 
N 2 SO4 O 1 364 348 SO4 SO4 . 
O 2 SO4 O 1 371 371 SO4 SO4 . 
P 3 NDP O 1 372 335 NDP NDP . 
Q 2 SO4 R 1 363 349 SO4 SO4 . 
R 2 SO4 R 1 364 350 SO4 SO4 . 
S 2 SO4 R 1 376 376 SO4 SO4 . 
T 3 NDP R 1 377 336 NDP NDP . 
U 2 SO4 P 1 363 351 SO4 SO4 . 
V 2 SO4 P 1 364 352 SO4 SO4 . 
W 2 SO4 P 1 372 372 SO4 SO4 . 
X 3 NDP P 1 373 337 NDP NDP . 
Y 2 SO4 Q 1 363 353 SO4 SO4 . 
Z 2 SO4 Q 1 364 354 SO4 SO4 . 
AA 2 SO4 Q 1 373 373 SO4 SO4 . 
BA 2 SO4 Q 1 374 374 SO4 SO4 . 
CA 3 NDP Q 1 375 338 NDP NDP . 
DA 2 SO4 A 1 363 355 SO4 SO4 . 
EA 2 SO4 A 1 364 356 SO4 SO4 . 
FA 2 SO4 A 1 375 375 SO4 SO4 . 
GA 3 NDP A 1 376 339 NDP NDP . 
HA 2 SO4 B 1 363 357 SO4 SO4 . 
IA 2 SO4 B 1 364 358 SO4 SO4 . 
JA 2 SO4 B 1 377 377 SO4 SO4 . 
KA 3 NDP B 1 378 340 NDP NDP . 
LA 2 SO4 C 1 363 359 SO4 SO4 . 
MA 2 SO4 C 1 364 360 SO4 SO4 . 
NA 3 NDP C 1 365 341 NDP NDP . 
OA 2 SO4 D 1 363 361 SO4 SO4 . 
PA 2 SO4 D 1 364 362 SO4 SO4 . 
QA 3 NDP D 1 365 342 NDP NDP . 
RA 2 SO4 H 1 363 363 SO4 SO4 . 
SA 2 SO4 H 1 364 364 SO4 SO4 . 
TA 2 SO4 H 1 378 378 SO4 SO4 . 
UA 3 NDP H 1 379 343 NDP NDP . 
VA 2 SO4 I 1 365 365 SO4 SO4 . 
WA 2 SO4 I 1 366 366 SO4 SO4 . 
XA 2 SO4 I 1 379 379 SO4 SO4 . 
YA 3 NDP I 1 380 344 NDP NDP . 
ZA 2 SO4 L 1 367 367 SO4 SO4 . 
AB 2 SO4 L 1 368 368 SO4 SO4 . 
BB 3 NDP L 1 369 345 NDP NDP . 
CB 2 SO4 M 1 369 369 SO4 SO4 . 
DB 2 SO4 M 1 370 370 SO4 SO4 . 
EB 2 SO4 M 1 380 380 SO4 SO4 . 
FB 3 NDP M 1 381 346 NDP NDP . 
GB 4 HOH O 1 373 3 HOH HOH . 
HB 4 HOH H 1 380 1 HOH HOH . 
HB 4 HOH H 2 381 2 HOH HOH . 
IB 4 HOH I 1 381 4 HOH HOH . 
JB 4 HOH L 1 370 5 HOH HOH . 
JB 4 HOH L 2 371 6 HOH HOH . 
JB 4 HOH L 3 372 7 HOH HOH . 
JB 4 HOH L 4 373 8 HOH HOH . 
KB 4 HOH M 1 382 9 HOH HOH . 
KB 4 HOH M 2 383 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . UA 3 1.944 -66.982 -13.558 1 37.31 ? PA NDP 379 H 1 
HETATM 2 O O1A NDP . . . UA 3 2.643 -68.024 -14.415 1 38.58 ? O1A NDP 379 H 1 
HETATM 3 O O2A NDP . . . UA 3 3.084 -65.914 -13.365 1 37.42 ? O2A NDP 379 H 1 
HETATM 4 O O5B NDP . . . UA 3 1.531 -67.377 -11.847 1 40.16 ? O5B NDP 379 H 1 
HETATM 5 C C5B NDP . . . UA 3 1.759 -68.448 -11.016 1 42.62 ? C5B NDP 379 H 1 
HETATM 6 C C4B NDP . . . UA 3 2.662 -69.458 -11.459 1 43.43 ? C4B NDP 379 H 1 
HETATM 7 O O4B NDP . . . UA 3 2.501 -70.89 -10.665 1 42.81 ? O4B NDP 379 H 1 
HETATM 8 C C3B NDP . . . UA 3 4.325 -69.422 -11.587 1 44.97 ? C3B NDP 379 H 1 
HETATM 9 O O3B NDP . . . UA 3 5.106 -68.447 -10.676 1 46.12 ? O3B NDP 379 H 1 
HETATM 10 C C2B NDP . . . UA 3 4.445 -71.02 -11.632 1 45.97 ? C2B NDP 379 H 1 
HETATM 11 O O2B NDP . . . UA 3 5.198 -72.066 -12.1 1 51.38 ? O2B NDP 379 H 1 
HETATM 12 C C1B NDP . . . UA 3 3.344 -71.731 -11.254 1 43.18 ? C1B NDP 379 H 1 
HETATM 13 N N9A NDP . . . UA 3 2.871 -73.069 -10.78 1 39.35 ? N9A NDP 379 H 1 
HETATM 14 C C8A NDP . . . UA 3 2.309 -73.91 -11.728 1 38.11 ? C8A NDP 379 H 1 
HETATM 15 N N7A NDP . . . UA 3 2.041 -75.098 -11.472 1 37.91 ? N7A NDP 379 H 1 
HETATM 16 C C5A NDP . . . UA 3 2.405 -75.213 -10.096 1 37.31 ? C5A NDP 379 H 1 
HETATM 17 C C6A NDP . . . UA 3 2.332 -76.386 -9.267 1 36.2 ? C6A NDP 379 H 1 
HETATM 18 N N6A NDP . . . UA 3 1.884 -77.551 -9.684 1 35.38 ? N6A NDP 379 H 1 
HETATM 19 N N1A NDP . . . UA 3 2.781 -76.138 -7.871 1 36.76 ? N1A NDP 379 H 1 
HETATM 20 C C2A NDP . . . UA 3 3.266 -74.936 -7.495 1 37.08 ? C2A NDP 379 H 1 
HETATM 21 N N3A NDP . . . UA 3 3.405 -73.738 -8.284 1 37.44 ? N3A NDP 379 H 1 
HETATM 22 C C4A NDP . . . UA 3 2.91 -73.908 -9.626 1 38.17 ? C4A NDP 379 H 1 
HETATM 23 O O3 NDP . . . UA 3 0.678 -66.318 -13.695 1 35.56 ? O3 NDP 379 H 1 
HETATM 24 P PN NDP . . . UA 3 -0.581 -65.484 -13.209 1 32.29 ? PN NDP 379 H 1 
HETATM 25 O O1N NDP . . . UA 3 -0.831 -64.523 -14.276 1 32.68 ? O1N NDP 379 H 1 
HETATM 26 O O2N NDP . . . UA 3 -0.361 -65.123 -11.651 1 35.01 ? O2N NDP 379 H 1 
HETATM 27 O O5D NDP . . . UA 3 -1.876 -66.654 -13.353 1 37.2 ? O5D NDP 379 H 1 
HETATM 28 C C5D NDP . . . UA 3 -2.494 -67.553 -12.211 1 37.79 ? C5D NDP 379 H 1 
HETATM 29 C C4D NDP . . . UA 3 -3.841 -67.485 -12.4 1 40.19 ? C4D NDP 379 H 1 
HETATM 30 O O4D NDP . . . UA 3 -4.538 -66.548 -11.543 1 40.45 ? O4D NDP 379 H 1 
HETATM 31 C C3D NDP . . . UA 3 -4.812 -68.328 -12.978 1 41.43 ? C3D NDP 379 H 1 
HETATM 32 O O3D NDP . . . UA 3 -4.242 -69.321 -13.877 1 45.59 ? O3D NDP 379 H 1 
HETATM 33 C C2D NDP . . . UA 3 -5.725 -66.945 -13.422 1 41.67 ? C2D NDP 379 H 1 
HETATM 34 O O2D NDP . . . UA 3 -6.054 -66.567 -14.41 1 43.38 ? O2D NDP 379 H 1 
HETATM 35 C C1D NDP . . . UA 3 -5.099 -65.596 -12.565 1 39.41 ? C1D NDP 379 H 1 
HETATM 36 N N1N NDP . . . UA 3 -5.536 -64.596 -13.543 1 38.49 ? N1N NDP 379 H 1 
HETATM 37 C C2N NDP . . . UA 3 -4.625 -63.691 -14.052 1 36.38 ? C2N NDP 379 H 1 
HETATM 38 C C3N NDP . . . UA 3 -4.672 -62.322 -13.874 1 34.88 ? C3N NDP 379 H 1 
HETATM 39 C C7N NDP . . . UA 3 -3.676 -61.552 -14.617 1 33.68 ? C7N NDP 379 H 1 
HETATM 40 O O7N NDP . . . UA 3 -3.982 -60.413 -15.017 1 32.68 ? O7N NDP 379 H 1 
HETATM 41 N N7N NDP . . . UA 3 -2.484 -62.316 -14.814 1 31.92 ? N7N NDP 379 H 1 
HETATM 42 C C4N NDP . . . UA 3 -5.757 -61.624 -13.072 1 34.94 ? C4N NDP 379 H 1 
HETATM 43 C C5N NDP . . . UA 3 -6.707 -62.732 -12.604 1 34.86 ? C5N NDP 379 H 1 
HETATM 44 C C6N NDP . . . UA 3 -6.557 -64.028 -12.866 1 37.59 ? C6N NDP 379 H 1 
HETATM 45 P P2B NDP . . . UA 3 5.901 -72.272 -13.529 1 56.11 ? P2B NDP 379 H 1 
HETATM 46 O O1X NDP . . . UA 3 6.358 -73.635 -13.965 1 57.38 ? O1X NDP 379 H 1 
HETATM 47 O O2X NDP . . . UA 3 5.105 -71.464 -14.545 1 56.76 ? O2X NDP 379 H 1 
HETATM 48 O O3X NDP . . . UA 3 7.182 -71.426 -12.954 1 54.73 ? O3X NDP 379 H 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#