data_2PKS
#
_model_server_result.job_id            WvEXdSSTEBUa4FtODU8rcw 
_model_server_result.datetime_utc      '2024-12-27 00:39:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":101}' 
#
_entry.id    2PKS 
#
_exptl.entry_id    2PKS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              344.41 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-({[4-(3-METHYLBENZOYL)PYRIDIN-2-YL]AMINO}METHYL)BENZENECARBOXIMIDAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.23 
_cell.angle_gamma         90 
_cell.entry_id            2PKS 
_cell.length_a            69.942 
_cell.length_b            71.843 
_cell.length_c            70.778 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PKS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 9 1_555 B SG CYS 119 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 28 B CYS 64 1_555 B SG CYS 44 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
disulf ? disulf3 C SG CYS 19 C CYS 203 1_555 C SG CYS 33 C CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf4 C SG CYS 47 C CYS 231 1_555 C SG CYS 77 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
#
_chem_comp.formula           'C21 H20 N4 O' 
_chem_comp.formula_weight    344.41 
_chem_comp.id                G44 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-({[4-(3-METHYLBENZOYL)PYRIDIN-2-YL]AMINO}METHYL)BENZENECARBOXIMIDAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 G44 sing 83 n n 
C1 H11A G44 sing 84 n n 
C1 H12A G44 sing 85 n n 
C1 H13 G44 sing 86 n n 
C2 C7 G44 sing 87 n y 
C2 C3 G44 doub 88 n y 
C3 C4 G44 sing 89 n y 
C3 H3 G44 sing 90 n n 
C4 C5 G44 doub 91 n y 
C4 H4 G44 sing 92 n n 
C5 C6 G44 sing 93 n y 
C5 H5 G44 sing 94 n n 
C6 C8 G44 sing 95 n n 
C6 C7 G44 doub 96 n y 
C7 H7 G44 sing 97 n n 
C8 C10 G44 sing 98 n n 
C8 O9 G44 doub 99 n n 
C10 C11 G44 doub 100 n y 
C10 C26 G44 sing 101 n y 
C11 C12 G44 sing 102 n y 
C11 H11 G44 sing 103 n n 
C12 N13 G44 doub 104 n y 
C12 H12 G44 sing 105 n n 
N13 C14 G44 sing 106 n y 
C14 N15 G44 sing 107 n n 
C14 C26 G44 doub 108 n y 
N15 C16 G44 sing 109 n n 
N15 HN15 G44 sing 110 n n 
C16 C17 G44 sing 111 n n 
C16 H161 G44 sing 112 n n 
C16 H162 G44 sing 113 n n 
C17 C22 G44 doub 114 n y 
C17 C18 G44 sing 115 n y 
C18 C19 G44 doub 116 n y 
C18 H18 G44 sing 117 n n 
C19 C20 G44 sing 118 n y 
C19 H19 G44 sing 119 n n 
C20 C21 G44 doub 120 n y 
C20 C23 G44 sing 121 n n 
C21 C22 G44 sing 122 n y 
C21 H21 G44 sing 123 n n 
C22 H22 G44 sing 124 n n 
C23 N24 G44 sing 125 n n 
C23 N25 G44 doub 126 n n 
N24 H241 G44 sing 127 n n 
N24 H242 G44 sing 128 n n 
N25 HN25 G44 sing 129 n n 
C26 H26 G44 sing 130 n n 
#
_atom_sites.entry_id                     2PKS 
_atom_sites.fract_transf_matrix[1][1]    0.014298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00258 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013919 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NA C 1 402 402 NA NA . 
F 6 G44 C 1 101 101 G44 G44 . 
G 7 HOH A 1 34 21 HOH HOH . 
G 7 HOH A 2 35 24 HOH HOH . 
G 7 HOH A 3 36 43 HOH HOH . 
G 7 HOH A 4 37 47 HOH HOH . 
H 7 HOH B 1 184 1 HOH HOH . 
H 7 HOH B 2 185 2 HOH HOH . 
H 7 HOH B 3 186 4 HOH HOH . 
H 7 HOH B 4 187 6 HOH HOH . 
H 7 HOH B 5 188 7 HOH HOH . 
H 7 HOH B 6 189 8 HOH HOH . 
H 7 HOH B 7 190 9 HOH HOH . 
H 7 HOH B 8 191 11 HOH HOH . 
H 7 HOH B 9 192 12 HOH HOH . 
H 7 HOH B 10 193 15 HOH HOH . 
H 7 HOH B 11 194 19 HOH HOH . 
H 7 HOH B 12 195 26 HOH HOH . 
H 7 HOH B 13 196 27 HOH HOH . 
H 7 HOH B 14 197 28 HOH HOH . 
H 7 HOH B 15 198 29 HOH HOH . 
H 7 HOH B 16 199 30 HOH HOH . 
H 7 HOH B 17 200 31 HOH HOH . 
H 7 HOH B 18 201 32 HOH HOH . 
H 7 HOH B 19 202 34 HOH HOH . 
H 7 HOH B 20 203 40 HOH HOH . 
H 7 HOH B 21 204 41 HOH HOH . 
H 7 HOH B 22 205 42 HOH HOH . 
H 7 HOH B 23 206 44 HOH HOH . 
I 7 HOH C 1 403 3 HOH HOH . 
I 7 HOH C 2 404 5 HOH HOH . 
I 7 HOH C 3 405 10 HOH HOH . 
I 7 HOH C 4 406 13 HOH HOH . 
I 7 HOH C 5 407 14 HOH HOH . 
I 7 HOH C 6 408 16 HOH HOH . 
I 7 HOH C 7 409 17 HOH HOH . 
I 7 HOH C 8 410 18 HOH HOH . 
I 7 HOH C 9 411 20 HOH HOH . 
I 7 HOH C 10 412 22 HOH HOH . 
I 7 HOH C 11 413 23 HOH HOH . 
I 7 HOH C 12 414 25 HOH HOH . 
I 7 HOH C 13 415 33 HOH HOH . 
I 7 HOH C 14 416 35 HOH HOH . 
I 7 HOH C 15 417 36 HOH HOH . 
I 7 HOH C 16 418 37 HOH HOH . 
I 7 HOH C 17 419 38 HOH HOH . 
I 7 HOH C 18 420 39 HOH HOH . 
I 7 HOH C 19 421 45 HOH HOH . 
I 7 HOH C 20 422 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 G44 . . . F 6 22.015 -16.817 25.341 1 44.78 ? C1 G44 101 C 1 
HETATM 2 C C2 G44 . . . F 6 20.981 -15.731 25.181 1 45.69 ? C2 G44 101 C 1 
HETATM 3 C C3 G44 . . . F 6 21.203 -14.512 25.795 1 45.43 ? C3 G44 101 C 1 
HETATM 4 C C4 G44 . . . F 6 20.295 -13.469 25.677 1 45 ? C4 G44 101 C 1 
HETATM 5 C C5 G44 . . . F 6 19.156 -13.629 24.931 1 42.65 ? C5 G44 101 C 1 
HETATM 6 C C6 G44 . . . F 6 18.904 -14.836 24.289 1 43.93 ? C6 G44 101 C 1 
HETATM 7 C C7 G44 . . . F 6 19.846 -15.896 24.408 1 46.14 ? C7 G44 101 C 1 
HETATM 8 C C8 G44 . . . F 6 17.773 -14.936 23.328 1 41.88 ? C8 G44 101 C 1 
HETATM 9 O O9 G44 . . . F 6 17.011 -15.876 23.262 1 45.27 ? O9 G44 101 C 1 
HETATM 10 C C10 G44 . . . F 6 17.79 -13.921 22.209 1 41.09 ? C10 G44 101 C 1 
HETATM 11 C C11 G44 . . . F 6 19.02 -13.833 21.505 1 43.62 ? C11 G44 101 C 1 
HETATM 12 C C12 G44 . . . F 6 19.168 -12.938 20.452 1 44.23 ? C12 G44 101 C 1 
HETATM 13 N N13 G44 . . . F 6 18.116 -12.193 20.065 1 45.14 ? N13 G44 101 C 1 
HETATM 14 C C14 G44 . . . F 6 16.882 -12.23 20.593 1 41.01 ? C14 G44 101 C 1 
HETATM 15 N N15 G44 . . . F 6 15.938 -11.303 20.016 1 35.08 ? N15 G44 101 C 1 
HETATM 16 C C16 G44 . . . F 6 14.48 -11.367 19.59 1 31.85 ? C16 G44 101 C 1 
HETATM 17 C C17 G44 . . . F 6 13.544 -11.021 20.727 1 20.45 ? C17 G44 101 C 1 
HETATM 18 C C18 G44 . . . F 6 13.053 -12.106 21.37 1 21.72 ? C18 G44 101 C 1 
HETATM 19 C C19 G44 . . . F 6 12.268 -11.994 22.479 1 20.74 ? C19 G44 101 C 1 
HETATM 20 C C20 G44 . . . F 6 11.99 -10.734 22.968 1 23.46 ? C20 G44 101 C 1 
HETATM 21 C C21 G44 . . . F 6 12.447 -9.579 22.327 1 20.38 ? C21 G44 101 C 1 
HETATM 22 C C22 G44 . . . F 6 13.239 -9.742 21.174 1 22.78 ? C22 G44 101 C 1 
HETATM 23 C C23 G44 . . . F 6 11.113 -10.745 24.141 1 30.84 ? C23 G44 101 C 1 
HETATM 24 N N24 G44 . . . F 6 10.674 -11.89 24.539 1 33.01 ? N24 G44 101 C 1 
HETATM 25 N N25 G44 . . . F 6 10.747 -9.614 24.854 1 39.13 ? N25 G44 101 C 1 
HETATM 26 C C26 G44 . . . F 6 16.714 -13.093 21.744 1 41.03 ? C26 G44 101 C 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#