data_2PKS
#
_model_server_result.job_id            EyNBlXo36L3NXk094zyuvA 
_model_server_result.datetime_utc      '2024-12-27 01:19:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    2PKS 
#
_exptl.entry_id    2PKS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.23 
_cell.angle_gamma         90 
_cell.entry_id            2PKS 
_cell.length_a            69.942 
_cell.length_b            71.843 
_cell.length_c            70.778 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PKS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 9 1_555 B SG CYS 119 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 28 B CYS 64 1_555 B SG CYS 44 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
disulf ? disulf3 C SG CYS 19 C CYS 203 1_555 C SG CYS 33 C CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf4 C SG CYS 47 C CYS 231 1_555 C SG CYS 77 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2PKS 
_atom_sites.fract_transf_matrix[1][1]    0.014298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00258 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013919 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NA C 1 402 402 NA NA . 
F 6 G44 C 1 101 101 G44 G44 . 
G 7 HOH A 1 34 21 HOH HOH . 
G 7 HOH A 2 35 24 HOH HOH . 
G 7 HOH A 3 36 43 HOH HOH . 
G 7 HOH A 4 37 47 HOH HOH . 
H 7 HOH B 1 184 1 HOH HOH . 
H 7 HOH B 2 185 2 HOH HOH . 
H 7 HOH B 3 186 4 HOH HOH . 
H 7 HOH B 4 187 6 HOH HOH . 
H 7 HOH B 5 188 7 HOH HOH . 
H 7 HOH B 6 189 8 HOH HOH . 
H 7 HOH B 7 190 9 HOH HOH . 
H 7 HOH B 8 191 11 HOH HOH . 
H 7 HOH B 9 192 12 HOH HOH . 
H 7 HOH B 10 193 15 HOH HOH . 
H 7 HOH B 11 194 19 HOH HOH . 
H 7 HOH B 12 195 26 HOH HOH . 
H 7 HOH B 13 196 27 HOH HOH . 
H 7 HOH B 14 197 28 HOH HOH . 
H 7 HOH B 15 198 29 HOH HOH . 
H 7 HOH B 16 199 30 HOH HOH . 
H 7 HOH B 17 200 31 HOH HOH . 
H 7 HOH B 18 201 32 HOH HOH . 
H 7 HOH B 19 202 34 HOH HOH . 
H 7 HOH B 20 203 40 HOH HOH . 
H 7 HOH B 21 204 41 HOH HOH . 
H 7 HOH B 22 205 42 HOH HOH . 
H 7 HOH B 23 206 44 HOH HOH . 
I 7 HOH C 1 403 3 HOH HOH . 
I 7 HOH C 2 404 5 HOH HOH . 
I 7 HOH C 3 405 10 HOH HOH . 
I 7 HOH C 4 406 13 HOH HOH . 
I 7 HOH C 5 407 14 HOH HOH . 
I 7 HOH C 6 408 16 HOH HOH . 
I 7 HOH C 7 409 17 HOH HOH . 
I 7 HOH C 8 410 18 HOH HOH . 
I 7 HOH C 9 411 20 HOH HOH . 
I 7 HOH C 10 412 22 HOH HOH . 
I 7 HOH C 11 413 23 HOH HOH . 
I 7 HOH C 12 414 25 HOH HOH . 
I 7 HOH C 13 415 33 HOH HOH . 
I 7 HOH C 14 416 35 HOH HOH . 
I 7 HOH C 15 417 36 HOH HOH . 
I 7 HOH C 16 418 37 HOH HOH . 
I 7 HOH C 17 419 38 HOH HOH . 
I 7 HOH C 18 420 39 HOH HOH . 
I 7 HOH C 19 421 45 HOH HOH . 
I 7 HOH C 20 422 46 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               6.362 
_atom_site.Cartn_y               -12.478 
_atom_site.Cartn_z               29.66 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        49.23 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#