data_2PKT # _model_server_result.job_id 7-xixmWpBImYAn404QdWlg _model_server_result.datetime_utc '2024-11-04 22:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 2PKT # _exptl.entry_id 2PKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PKT _cell.length_a 38.74 _cell.length_b 38.74 _cell.length_c 246.46 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 55 A ASP 54 10_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A OE2 GLU 57 A GLU 56 10_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 A O ASN 77 A ASN 76 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A OD1 ASN 77 A ASN 76 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 A OD2 ASP 90 A ASP 89 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 A OD2 ASP 90 A ASP 89 8_435 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc7 B CA CA . A CA 201 1_555 H O HOH . A HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc8 B CA CA . A CA 201 1_555 H O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc9 C CA CA . A CA 202 1_555 E O ACT . A ACT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc10 C CA CA . A CA 202 1_555 E O ACT . A ACT 204 8_435 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 C CA CA . A CA 202 1_555 H O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc12 C CA CA . A CA 202 1_555 H O HOH . A HOH 215 8_435 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PKT _atom_sites.fract_transf_matrix[1][1] 0.025813 _atom_sites.fract_transf_matrix[1][2] 0.014903 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 201 CA CA . C 2 CA A 1 202 202 CA CA . D 3 CL A 1 203 203 CL CL . E 4 ACT A 1 204 204 ACT ACT . F 5 PG4 A 1 205 205 PG4 PG4 . G 6 PEG A 1 206 206 PEG PEG . H 7 HOH A 1 207 1 HOH HOH . H 7 HOH A 2 208 2 HOH HOH . H 7 HOH A 3 209 3 HOH HOH . H 7 HOH A 4 210 4 HOH HOH . H 7 HOH A 5 211 5 HOH HOH . H 7 HOH A 6 212 6 HOH HOH . H 7 HOH A 7 213 7 HOH HOH . H 7 HOH A 8 214 8 HOH HOH . H 7 HOH A 9 215 9 HOH HOH . H 7 HOH A 10 216 10 HOH HOH . H 7 HOH A 11 217 11 HOH HOH . H 7 HOH A 12 218 12 HOH HOH . H 7 HOH A 13 219 13 HOH HOH . H 7 HOH A 14 220 14 HOH HOH . H 7 HOH A 15 221 15 HOH HOH . H 7 HOH A 16 222 16 HOH HOH . H 7 HOH A 17 223 17 HOH HOH . H 7 HOH A 18 224 18 HOH HOH . H 7 HOH A 19 225 19 HOH HOH . H 7 HOH A 20 226 20 HOH HOH . H 7 HOH A 21 227 21 HOH HOH . H 7 HOH A 22 228 22 HOH HOH . H 7 HOH A 23 229 23 HOH HOH . H 7 HOH A 24 230 24 HOH HOH . H 7 HOH A 25 231 25 HOH HOH . H 7 HOH A 26 232 26 HOH HOH . H 7 HOH A 27 233 27 HOH HOH . H 7 HOH A 28 234 28 HOH HOH . H 7 HOH A 29 235 29 HOH HOH . H 7 HOH A 30 236 30 HOH HOH . H 7 HOH A 31 237 31 HOH HOH . H 7 HOH A 32 238 32 HOH HOH . H 7 HOH A 33 239 33 HOH HOH . H 7 HOH A 34 240 34 HOH HOH . H 7 HOH A 35 241 35 HOH HOH . H 7 HOH A 36 242 36 HOH HOH . H 7 HOH A 37 243 37 HOH HOH . H 7 HOH A 38 244 38 HOH HOH . H 7 HOH A 39 245 39 HOH HOH . H 7 HOH A 40 246 40 HOH HOH . H 7 HOH A 41 247 41 HOH HOH . H 7 HOH A 42 248 42 HOH HOH . H 7 HOH A 43 249 43 HOH HOH . H 7 HOH A 44 250 44 HOH HOH . H 7 HOH A 45 251 45 HOH HOH . H 7 HOH A 46 252 46 HOH HOH . H 7 HOH A 47 253 47 HOH HOH . H 7 HOH A 48 254 48 HOH HOH . H 7 HOH A 49 255 49 HOH HOH . H 7 HOH A 50 256 50 HOH HOH . H 7 HOH A 51 257 51 HOH HOH . H 7 HOH A 52 258 52 HOH HOH . H 7 HOH A 53 259 53 HOH HOH . H 7 HOH A 54 260 54 HOH HOH . H 7 HOH A 55 261 55 HOH HOH . H 7 HOH A 56 262 56 HOH HOH . H 7 HOH A 57 263 57 HOH HOH . H 7 HOH A 58 264 58 HOH HOH . H 7 HOH A 59 265 59 HOH HOH . H 7 HOH A 60 266 60 HOH HOH . H 7 HOH A 61 267 61 HOH HOH . H 7 HOH A 62 268 62 HOH HOH . H 7 HOH A 63 269 63 HOH HOH . H 7 HOH A 64 270 64 HOH HOH . H 7 HOH A 65 271 65 HOH HOH . H 7 HOH A 66 272 66 HOH HOH . H 7 HOH A 67 273 67 HOH HOH . H 7 HOH A 68 274 68 HOH HOH . H 7 HOH A 69 275 69 HOH HOH . H 7 HOH A 70 276 70 HOH HOH . H 7 HOH A 71 277 71 HOH HOH . H 7 HOH A 72 278 72 HOH HOH . H 7 HOH A 73 279 73 HOH HOH . H 7 HOH A 74 280 74 HOH HOH . H 7 HOH A 75 281 75 HOH HOH . H 7 HOH A 76 282 76 HOH HOH . H 7 HOH A 77 283 77 HOH HOH . H 7 HOH A 78 284 78 HOH HOH . H 7 HOH A 79 285 79 HOH HOH . H 7 HOH A 80 286 80 HOH HOH . H 7 HOH A 81 287 81 HOH HOH . H 7 HOH A 82 288 82 HOH HOH . H 7 HOH A 83 289 83 HOH HOH . H 7 HOH A 84 290 84 HOH HOH . H 7 HOH A 85 291 85 HOH HOH . H 7 HOH A 86 292 86 HOH HOH . H 7 HOH A 87 293 87 HOH HOH . H 7 HOH A 88 294 88 HOH HOH . H 7 HOH A 89 295 89 HOH HOH . H 7 HOH A 90 296 90 HOH HOH . H 7 HOH A 91 297 91 HOH HOH . H 7 HOH A 92 298 92 HOH HOH . H 7 HOH A 93 299 93 HOH HOH . H 7 HOH A 94 300 94 HOH HOH . H 7 HOH A 95 301 95 HOH HOH . H 7 HOH A 96 302 96 HOH HOH . H 7 HOH A 97 303 97 HOH HOH . H 7 HOH A 98 304 98 HOH HOH . H 7 HOH A 99 305 99 HOH HOH . H 7 HOH A 100 306 100 HOH HOH . H 7 HOH A 101 307 101 HOH HOH . H 7 HOH A 102 308 102 HOH HOH . H 7 HOH A 103 309 103 HOH HOH . H 7 HOH A 104 310 104 HOH HOH . H 7 HOH A 105 311 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.053 _atom_site.Cartn_y -33.55 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 10.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #