data_2PL0 # _model_server_result.job_id eWF-78KrPvv7_Z296-xk6w _model_server_result.datetime_utc '2025-03-28 00:36:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2PL0 # _exptl.entry_id 2PL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PL0 _cell.length_a 75.21 _cell.length_b 103.17 _cell.length_c 52.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 290 n y C1 C2 STI sing 291 n y C1 H11 STI sing 292 n n C6 C5 STI sing 293 n y C6 H61 STI sing 294 n n C5 C4 STI doub 295 n y C5 C7 STI sing 296 n y C4 N3 STI sing 297 n y C4 H41 STI sing 298 n n N3 C2 STI doub 299 n y C2 H21 STI sing 300 n n C7 C12 STI doub 301 n y C7 N8 STI sing 302 n y C12 C11 STI sing 303 n y C12 H121 STI sing 304 n n C11 N10 STI doub 305 n y C11 H111 STI sing 306 n n N10 C9 STI sing 307 n y C9 N8 STI doub 308 n y C9 N13 STI sing 309 n n N13 C14 STI sing 310 n n N13 H131 STI sing 311 n n C14 C19 STI doub 312 n y C14 C15 STI sing 313 n y C19 C18 STI sing 314 n y C19 C20 STI sing 315 n n C18 C17 STI doub 316 n y C18 H181 STI sing 317 n n C17 C16 STI sing 318 n y C17 H171 STI sing 319 n n C16 C15 STI doub 320 n y C16 N21 STI sing 321 n n C15 H151 STI sing 322 n n N21 C22 STI sing 323 n n N21 H211 STI sing 324 n n C22 C23 STI sing 325 n n C22 O29 STI doub 326 n n C23 C25 STI doub 327 n y C23 C29 STI sing 328 n y C25 C26 STI sing 329 n y C25 H251 STI sing 330 n n C26 C27 STI doub 331 n y C26 H261 STI sing 332 n n C27 C28 STI sing 333 n y C27 C46 STI sing 334 n n C28 C29 STI doub 335 n y C28 H281 STI sing 336 n n C29 H291 STI sing 337 n n C46 N48 STI sing 338 n n C46 H461 STI sing 339 n n C46 H462 STI sing 340 n n N48 C53 STI sing 341 n n N48 C49 STI sing 342 n n C53 C52 STI sing 343 n n C53 H531 STI sing 344 n n C53 H532 STI sing 345 n n C52 N51 STI sing 346 n n C52 H521 STI sing 347 n n C52 H522 STI sing 348 n n N51 C54 STI sing 349 n n N51 C50 STI sing 350 n n C54 H541 STI sing 351 n n C54 H542 STI sing 352 n n C54 H543 STI sing 353 n n C50 C49 STI sing 354 n n C50 H501 STI sing 355 n n C50 H502 STI sing 356 n n C49 H491 STI sing 357 n n C49 H492 STI sing 358 n n C20 H201 STI sing 359 n n C20 H202 STI sing 360 n n C20 H203 STI sing 361 n n # _atom_sites.entry_id 2PL0 _atom_sites.fract_transf_matrix[1][1] 0.013296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STI A 1 200 200 STI STI . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 24 24 HOH HOH . C 3 HOH A 23 25 25 HOH HOH . C 3 HOH A 24 26 26 HOH HOH . C 3 HOH A 25 27 27 HOH HOH . C 3 HOH A 26 28 28 HOH HOH . C 3 HOH A 27 29 29 HOH HOH . C 3 HOH A 28 30 30 HOH HOH . C 3 HOH A 29 32 32 HOH HOH . C 3 HOH A 30 33 33 HOH HOH . C 3 HOH A 31 34 34 HOH HOH . C 3 HOH A 32 35 35 HOH HOH . C 3 HOH A 33 36 36 HOH HOH . C 3 HOH A 34 37 37 HOH HOH . C 3 HOH A 35 38 38 HOH HOH . C 3 HOH A 36 39 39 HOH HOH . C 3 HOH A 37 40 40 HOH HOH . C 3 HOH A 38 41 41 HOH HOH . C 3 HOH A 39 42 42 HOH HOH . C 3 HOH A 40 43 43 HOH HOH . C 3 HOH A 41 44 44 HOH HOH . C 3 HOH A 42 45 45 HOH HOH . C 3 HOH A 43 46 46 HOH HOH . C 3 HOH A 44 47 47 HOH HOH . C 3 HOH A 45 48 48 HOH HOH . C 3 HOH A 46 49 49 HOH HOH . C 3 HOH A 47 50 50 HOH HOH . C 3 HOH A 48 51 51 HOH HOH . C 3 HOH A 49 53 53 HOH HOH . C 3 HOH A 50 54 54 HOH HOH . C 3 HOH A 51 55 55 HOH HOH . C 3 HOH A 52 56 56 HOH HOH . C 3 HOH A 53 58 58 HOH HOH . C 3 HOH A 54 60 60 HOH HOH . C 3 HOH A 55 61 61 HOH HOH . C 3 HOH A 56 62 62 HOH HOH . C 3 HOH A 57 63 63 HOH HOH . C 3 HOH A 58 65 65 HOH HOH . C 3 HOH A 59 66 66 HOH HOH . C 3 HOH A 60 67 67 HOH HOH . C 3 HOH A 61 68 68 HOH HOH . C 3 HOH A 62 69 69 HOH HOH . C 3 HOH A 63 71 71 HOH HOH . C 3 HOH A 64 72 72 HOH HOH . C 3 HOH A 65 73 73 HOH HOH . C 3 HOH A 66 74 74 HOH HOH . C 3 HOH A 67 75 75 HOH HOH . C 3 HOH A 68 77 77 HOH HOH . C 3 HOH A 69 78 78 HOH HOH . C 3 HOH A 70 79 79 HOH HOH . C 3 HOH A 71 80 80 HOH HOH . C 3 HOH A 72 81 81 HOH HOH . C 3 HOH A 73 82 82 HOH HOH . C 3 HOH A 74 84 84 HOH HOH . C 3 HOH A 75 85 85 HOH HOH . C 3 HOH A 76 86 86 HOH HOH . C 3 HOH A 77 87 87 HOH HOH . C 3 HOH A 78 88 88 HOH HOH . C 3 HOH A 79 89 89 HOH HOH . C 3 HOH A 80 90 90 HOH HOH . C 3 HOH A 81 91 91 HOH HOH . C 3 HOH A 82 93 93 HOH HOH . C 3 HOH A 83 94 94 HOH HOH . C 3 HOH A 84 95 95 HOH HOH . C 3 HOH A 85 99 99 HOH HOH . C 3 HOH A 86 100 100 HOH HOH . C 3 HOH A 87 102 102 HOH HOH . C 3 HOH A 88 103 103 HOH HOH . C 3 HOH A 89 104 104 HOH HOH . C 3 HOH A 90 105 105 HOH HOH . C 3 HOH A 91 106 106 HOH HOH . C 3 HOH A 92 107 107 HOH HOH . C 3 HOH A 93 108 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . B 2 29.553 18.318 4.059 1 39.54 ? C1 STI 200 A 1 HETATM 2 C C6 STI . . . B 2 28.67 17.77 5.005 1 38.55 ? C6 STI 200 A 1 HETATM 3 C C5 STI . . . B 2 29.087 16.642 5.78 1 41.65 ? C5 STI 200 A 1 HETATM 4 C C4 STI . . . B 2 30.395 16.12 5.555 1 42.52 ? C4 STI 200 A 1 HETATM 5 N N3 STI . . . B 2 31.199 16.685 4.636 1 41.88 ? N3 STI 200 A 1 HETATM 6 C C2 STI . . . B 2 30.825 17.746 3.898 1 41.68 ? C2 STI 200 A 1 HETATM 7 C C7 STI . . . B 2 28.159 16.047 6.796 1 39.49 ? C7 STI 200 A 1 HETATM 8 C C12 STI . . . B 2 28.395 14.767 7.377 1 39.3 ? C12 STI 200 A 1 HETATM 9 C C11 STI . . . B 2 27.462 14.3 8.322 1 39.92 ? C11 STI 200 A 1 HETATM 10 N N10 STI . . . B 2 26.397 15.063 8.644 1 39.54 ? N10 STI 200 A 1 HETATM 11 C C9 STI . . . B 2 26.206 16.269 8.072 1 38.05 ? C9 STI 200 A 1 HETATM 12 N N8 STI . . . B 2 27.067 16.745 7.175 1 39.71 ? N8 STI 200 A 1 HETATM 13 N N13 STI . . . B 2 25.103 17.05 8.397 1 34.55 ? N13 STI 200 A 1 HETATM 14 C C14 STI . . . B 2 24.13 16.666 9.336 1 35.34 ? C14 STI 200 A 1 HETATM 15 C C19 STI . . . B 2 23.111 15.705 9.018 1 34.81 ? C19 STI 200 A 1 HETATM 16 C C18 STI . . . B 2 22.155 15.359 9.992 1 35.98 ? C18 STI 200 A 1 HETATM 17 C C17 STI . . . B 2 22.193 15.95 11.273 1 38.19 ? C17 STI 200 A 1 HETATM 18 C C16 STI . . . B 2 23.195 16.904 11.602 1 37.61 ? C16 STI 200 A 1 HETATM 19 C C15 STI . . . B 2 24.162 17.254 10.62 1 36.09 ? C15 STI 200 A 1 HETATM 20 N N21 STI . . . B 2 23.175 17.489 12.91 1 38.8 ? N21 STI 200 A 1 HETATM 21 C C22 STI . . . B 2 24.168 18.231 13.51 1 37.44 ? C22 STI 200 A 1 HETATM 22 C C23 STI . . . B 2 23.936 18.771 14.879 1 38.17 ? C23 STI 200 A 1 HETATM 23 C C25 STI . . . B 2 23.074 18.089 15.79 1 39.45 ? C25 STI 200 A 1 HETATM 24 C C26 STI . . . B 2 22.858 18.609 17.085 1 40.72 ? C26 STI 200 A 1 HETATM 25 C C27 STI . . . B 2 23.498 19.808 17.486 1 42.23 ? C27 STI 200 A 1 HETATM 26 C C28 STI . . . B 2 24.353 20.49 16.585 1 41.57 ? C28 STI 200 A 1 HETATM 27 C C29 STI . . . B 2 24.575 19.981 15.293 1 39.77 ? C29 STI 200 A 1 HETATM 28 C C46 STI . . . B 2 23.276 20.377 18.88 1 41.69 ? C46 STI 200 A 1 HETATM 29 N N48 STI . . . B 2 23.491 19.356 19.929 1 42.82 ? N48 STI 200 A 1 HETATM 30 C C53 STI . . . B 2 24.935 19.094 20.182 1 43.57 ? C53 STI 200 A 1 HETATM 31 C C52 STI . . . B 2 25.066 17.933 21.192 1 42.97 ? C52 STI 200 A 1 HETATM 32 N N51 STI . . . B 2 24.333 18.269 22.441 1 42.15 ? N51 STI 200 A 1 HETATM 33 C C54 STI . . . B 2 24.467 17.193 23.434 1 41.96 ? C54 STI 200 A 1 HETATM 34 C C50 STI . . . B 2 22.9 18.59 22.203 1 43.35 ? C50 STI 200 A 1 HETATM 35 C C49 STI . . . B 2 22.787 19.74 21.178 1 44.36 ? C49 STI 200 A 1 HETATM 36 O O29 STI . . . B 2 25.228 18.467 12.947 1 36.93 ? O29 STI 200 A 1 HETATM 37 C C20 STI . . . B 2 23.036 15.057 7.652 1 34.71 ? C20 STI 200 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #