data_2PL3
#
_model_server_result.job_id            cj_iaX3zphM-F7iMeTz2gA 
_model_server_result.datetime_utc      '2024-12-26 22:11:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pl3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    2PL3 
#
_exptl.entry_id    2PL3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2PL3 
_cell.length_a            63.5 
_cell.length_b            63.5 
_cell.length_c            304.01 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PL3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 179 A GLU 223 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc2 C O1B ADP . A ADP 300 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc3 B MG MG . A MG 301 1_555 H O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc4 B MG MG . A MG 301 1_555 H O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc5 B MG MG . A MG 301 1_555 H O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc6 B MG MG . A MG 301 1_555 H O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2PL3 
_atom_sites.fract_transf_matrix[1][1]    0.015748 
_atom_sites.fract_transf_matrix[1][2]    0.009092 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018184 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 301 MG MO4 . 
C 3 ADP A 1 300 300 ADP ADP . 
D 4 EOH A 1 400 400 EOH EOH . 
E 4 EOH A 1 401 401 EOH EOH . 
F 4 EOH A 1 402 402 EOH EOH . 
G 4 EOH A 1 403 403 EOH EOH . 
H 5 HOH A 1 404 301 HOH MO4 . 
H 5 HOH A 2 405 301 HOH MO4 . 
H 5 HOH A 3 406 301 HOH MO4 . 
H 5 HOH A 4 407 1 HOH HOH . 
H 5 HOH A 5 408 2 HOH HOH . 
H 5 HOH A 6 409 3 HOH HOH . 
H 5 HOH A 7 410 4 HOH HOH . 
H 5 HOH A 8 411 5 HOH HOH . 
H 5 HOH A 9 412 6 HOH HOH . 
H 5 HOH A 10 413 7 HOH HOH . 
H 5 HOH A 11 414 8 HOH HOH . 
H 5 HOH A 12 415 9 HOH HOH . 
H 5 HOH A 13 416 10 HOH HOH . 
H 5 HOH A 14 417 11 HOH HOH . 
H 5 HOH A 15 418 12 HOH HOH . 
H 5 HOH A 16 419 13 HOH HOH . 
H 5 HOH A 17 420 14 HOH HOH . 
H 5 HOH A 18 421 15 HOH HOH . 
H 5 HOH A 19 422 16 HOH HOH . 
H 5 HOH A 20 423 17 HOH HOH . 
H 5 HOH A 21 424 18 HOH HOH . 
H 5 HOH A 22 425 19 HOH HOH . 
H 5 HOH A 23 426 20 HOH HOH . 
H 5 HOH A 24 427 21 HOH HOH . 
H 5 HOH A 25 428 22 HOH HOH . 
H 5 HOH A 26 429 23 HOH HOH . 
H 5 HOH A 27 430 24 HOH HOH . 
H 5 HOH A 28 431 25 HOH HOH . 
H 5 HOH A 29 432 26 HOH HOH . 
H 5 HOH A 30 433 27 HOH HOH . 
H 5 HOH A 31 434 28 HOH HOH . 
H 5 HOH A 32 435 29 HOH HOH . 
H 5 HOH A 33 436 30 HOH HOH . 
H 5 HOH A 34 437 31 HOH HOH . 
H 5 HOH A 35 438 32 HOH HOH . 
H 5 HOH A 36 439 33 HOH HOH . 
H 5 HOH A 37 440 34 HOH HOH . 
H 5 HOH A 38 441 35 HOH HOH . 
H 5 HOH A 39 442 36 HOH HOH . 
H 5 HOH A 40 443 37 HOH HOH . 
H 5 HOH A 41 444 38 HOH HOH . 
H 5 HOH A 42 445 39 HOH HOH . 
H 5 HOH A 43 446 40 HOH HOH . 
H 5 HOH A 44 447 41 HOH HOH . 
H 5 HOH A 45 448 42 HOH HOH . 
H 5 HOH A 46 449 43 HOH HOH . 
H 5 HOH A 47 450 44 HOH HOH . 
H 5 HOH A 48 451 45 HOH HOH . 
H 5 HOH A 49 452 46 HOH HOH . 
H 5 HOH A 50 453 47 HOH HOH . 
H 5 HOH A 51 454 48 HOH HOH . 
H 5 HOH A 52 455 49 HOH HOH . 
H 5 HOH A 53 456 50 HOH HOH . 
H 5 HOH A 54 457 51 HOH HOH . 
H 5 HOH A 55 458 52 HOH HOH . 
H 5 HOH A 56 459 53 HOH HOH . 
H 5 HOH A 57 460 54 HOH HOH . 
H 5 HOH A 58 461 55 HOH HOH . 
H 5 HOH A 59 462 56 HOH HOH . 
H 5 HOH A 60 463 57 HOH HOH . 
H 5 HOH A 61 464 58 HOH HOH . 
H 5 HOH A 62 465 59 HOH HOH . 
H 5 HOH A 63 466 60 HOH HOH . 
H 5 HOH A 64 467 61 HOH HOH . 
H 5 HOH A 65 468 62 HOH HOH . 
H 5 HOH A 66 469 301 HOH MO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -21.09 -12.687 9.673 1 32.11 ? PB ADP 300 A 1 
HETATM 2 O O1B ADP . . . C 3 -19.819 -13.078 10.412 1 31.74 ? O1B ADP 300 A 1 
HETATM 3 O O2B ADP . . . C 3 -20.821 -11.954 8.373 1 31.51 ? O2B ADP 300 A 1 
HETATM 4 O O3B ADP . . . C 3 -22.011 -11.898 10.551 1 32.89 ? O3B ADP 300 A 1 
HETATM 5 P PA ADP . . . C 3 -21.757 -15.526 9.53 1 37.44 ? PA ADP 300 A 1 
HETATM 6 O O1A ADP . . . C 3 -20.479 -15.985 8.93 1 35.05 ? O1A ADP 300 A 1 
HETATM 7 O O2A ADP . . . C 3 -21.825 -15.688 11.002 1 35.52 ? O2A ADP 300 A 1 
HETATM 8 O O3A ADP . . . C 3 -21.98 -13.944 9.19 1 35.14 ? O3A ADP 300 A 1 
HETATM 9 O O5' ADP . . . C 3 -22.969 -16.137 8.708 1 38.3 ? O5' ADP 300 A 1 
HETATM 10 C C5' ADP . . . C 3 -24.28 -15.706 9.093 1 39.58 ? C5' ADP 300 A 1 
HETATM 11 C C4' ADP . . . C 3 -25.351 -16.786 8.959 1 40.32 ? C4' ADP 300 A 1 
HETATM 12 O O4' ADP . . . C 3 -25.512 -17.153 7.596 1 40.78 ? O4' ADP 300 A 1 
HETATM 13 C C3' ADP . . . C 3 -25.041 -18.08 9.679 1 41.22 ? C3' ADP 300 A 1 
HETATM 14 O O3' ADP . . . C 3 -26.278 -18.681 10.023 1 45.36 ? O3' ADP 300 A 1 
HETATM 15 C C2' ADP . . . C 3 -24.408 -18.941 8.622 1 43.36 ? C2' ADP 300 A 1 
HETATM 16 O O2' ADP . . . C 3 -24.553 -20.345 8.848 1 44.3 ? O2' ADP 300 A 1 
HETATM 17 C C1' ADP . . . C 3 -25.162 -18.518 7.376 1 40.65 ? C1' ADP 300 A 1 
HETATM 18 N N9 ADP . . . C 3 -24.347 -18.705 6.151 1 40.15 ? N9 ADP 300 A 1 
HETATM 19 C C8 ADP . . . C 3 -23.063 -18.334 5.938 1 39.96 ? C8 ADP 300 A 1 
HETATM 20 N N7 ADP . . . C 3 -22.66 -18.653 4.694 1 37.38 ? N7 ADP 300 A 1 
HETATM 21 C C5 ADP . . . C 3 -23.726 -19.241 4.103 1 37.26 ? C5 ADP 300 A 1 
HETATM 22 C C6 ADP . . . C 3 -24.017 -19.842 2.792 1 38.8 ? C6 ADP 300 A 1 
HETATM 23 N N6 ADP . . . C 3 -23.056 -19.86 1.864 1 40.85 ? N6 ADP 300 A 1 
HETATM 24 N N1 ADP . . . C 3 -25.246 -20.366 2.563 1 40.97 ? N1 ADP 300 A 1 
HETATM 25 C C2 ADP . . . C 3 -26.214 -20.367 3.497 1 39.6 ? C2 ADP 300 A 1 
HETATM 26 N N3 ADP . . . C 3 -26.032 -19.839 4.716 1 40.15 ? N3 ADP 300 A 1 
HETATM 27 C C4 ADP . . . C 3 -24.822 -19.295 5.066 1 40.11 ? C4 ADP 300 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#