data_2PL7
#
_model_server_result.job_id            kzH4_WO2xxGLj-NfLXPiRQ 
_model_server_result.datetime_utc      '2024-11-29 19:37:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pl7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    2PL7 
#
_exptl.entry_id    2PL7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              294.408 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PL7 
_cell.length_a            25.3 
_cell.length_b            57.1 
_cell.length_c            72.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PL7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 13 A CYS 13 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 A SG CYS 14 A CYS 14 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 A SG CYS 53 A CYS 53 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf5 B SG CYS 3 B CYS 3 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 B SG CYS 13 B CYS 13 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf7 B SG CYS 14 B CYS 14 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf8 B SG CYS 53 B CYS 53 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C13 H26 O5 S' 
_chem_comp.formula_weight    294.408 
_chem_comp.id                HTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'heptyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL 1-THIOHEXOPYRANOSIDE;heptyl 1-thio-beta-D-glucoside;heptyl 1-thio-D-glucoside;heptyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 HTG sing 108 n n 
C1 C2 HTG sing 109 n n 
C1 O5 HTG sing 110 n n 
C1 H1 HTG sing 111 n n 
S1 C1' HTG sing 112 n n 
C2 O2 HTG sing 113 n n 
C2 C3 HTG sing 114 n n 
C2 H2 HTG sing 115 n n 
O2 HO2 HTG sing 116 n n 
C3 O3 HTG sing 117 n n 
C3 C4 HTG sing 118 n n 
C3 H3 HTG sing 119 n n 
O3 HO3 HTG sing 120 n n 
C4 O4 HTG sing 121 n n 
C4 C5 HTG sing 122 n n 
C4 H4 HTG sing 123 n n 
O4 HO4 HTG sing 124 n n 
C5 O5 HTG sing 125 n n 
C5 C6 HTG sing 126 n n 
C5 H5 HTG sing 127 n n 
C6 O6 HTG sing 128 n n 
C6 H61 HTG sing 129 n n 
C6 H62 HTG sing 130 n n 
O6 HO6 HTG sing 131 n n 
C1' C2' HTG sing 132 n n 
C1' "H1'1" HTG sing 133 n n 
C1' "H1'2" HTG sing 134 n n 
C2' C3' HTG sing 135 n n 
C2' "H2'1" HTG sing 136 n n 
C2' "H2'2" HTG sing 137 n n 
C3' C4' HTG sing 138 n n 
C3' "H3'1" HTG sing 139 n n 
C3' "H3'2" HTG sing 140 n n 
C4' C5' HTG sing 141 n n 
C4' "H4'1" HTG sing 142 n n 
C4' "H4'2" HTG sing 143 n n 
C5' C6' HTG sing 144 n n 
C5' "H5'1" HTG sing 145 n n 
C5' "H5'2" HTG sing 146 n n 
C6' C7' HTG sing 147 n n 
C6' "H6'1" HTG sing 148 n n 
C6' "H6'2" HTG sing 149 n n 
C7' "H7'1" HTG sing 150 n n 
C7' "H7'2" HTG sing 151 n n 
C7' "H7'3" HTG sing 152 n n 
#
_atom_sites.entry_id                     2PL7 
_atom_sites.fract_transf_matrix[1][1]    0.039526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017513 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 B 1 150 150 SO4 SO4 . 
D 3 HTG B 1 1001 1001 HTG HTG . 
E 4 HOH A 1 72 2 HOH HOH . 
E 4 HOH A 2 73 3 HOH HOH . 
E 4 HOH A 3 74 4 HOH HOH . 
E 4 HOH A 4 75 6 HOH HOH . 
E 4 HOH A 5 76 9 HOH HOH . 
E 4 HOH A 6 77 10 HOH HOH . 
E 4 HOH A 7 78 14 HOH HOH . 
E 4 HOH A 8 79 16 HOH HOH . 
E 4 HOH A 9 80 19 HOH HOH . 
E 4 HOH A 10 81 21 HOH HOH . 
E 4 HOH A 11 82 22 HOH HOH . 
E 4 HOH A 12 83 23 HOH HOH . 
E 4 HOH A 13 84 26 HOH HOH . 
E 4 HOH A 14 85 31 HOH HOH . 
E 4 HOH A 15 86 34 HOH HOH . 
E 4 HOH A 16 87 40 HOH HOH . 
E 4 HOH A 17 88 41 HOH HOH . 
E 4 HOH A 18 89 42 HOH HOH . 
E 4 HOH A 19 90 44 HOH HOH . 
E 4 HOH A 20 91 45 HOH HOH . 
E 4 HOH A 21 92 46 HOH HOH . 
E 4 HOH A 22 93 48 HOH HOH . 
E 4 HOH A 23 94 49 HOH HOH . 
E 4 HOH A 24 95 50 HOH HOH . 
E 4 HOH A 25 96 52 HOH HOH . 
E 4 HOH A 26 97 57 HOH HOH . 
E 4 HOH A 27 98 58 HOH HOH . 
E 4 HOH A 28 99 59 HOH HOH . 
E 4 HOH A 29 100 60 HOH HOH . 
E 4 HOH A 30 101 61 HOH HOH . 
E 4 HOH A 31 102 66 HOH HOH . 
E 4 HOH A 32 103 67 HOH HOH . 
E 4 HOH A 33 104 68 HOH HOH . 
E 4 HOH A 34 105 69 HOH HOH . 
E 4 HOH A 35 106 70 HOH HOH . 
E 4 HOH A 36 107 72 HOH HOH . 
E 4 HOH A 37 108 73 HOH HOH . 
E 4 HOH A 38 109 74 HOH HOH . 
E 4 HOH A 39 110 80 HOH HOH . 
E 4 HOH A 40 111 81 HOH HOH . 
E 4 HOH A 41 112 82 HOH HOH . 
E 4 HOH A 42 113 83 HOH HOH . 
E 4 HOH A 43 114 85 HOH HOH . 
E 4 HOH A 44 115 87 HOH HOH . 
E 4 HOH A 45 116 88 HOH HOH . 
E 4 HOH A 46 117 90 HOH HOH . 
E 4 HOH A 47 118 92 HOH HOH . 
E 4 HOH A 48 119 94 HOH HOH . 
E 4 HOH A 49 120 95 HOH HOH . 
E 4 HOH A 50 121 97 HOH HOH . 
E 4 HOH A 51 122 100 HOH HOH . 
E 4 HOH A 52 123 104 HOH HOH . 
E 4 HOH A 53 124 105 HOH HOH . 
E 4 HOH A 54 125 108 HOH HOH . 
E 4 HOH A 55 126 109 HOH HOH . 
E 4 HOH A 56 127 110 HOH HOH . 
E 4 HOH A 57 128 111 HOH HOH . 
E 4 HOH A 58 129 112 HOH HOH . 
E 4 HOH A 59 130 113 HOH HOH . 
E 4 HOH A 60 131 117 HOH HOH . 
E 4 HOH A 61 132 122 HOH HOH . 
E 4 HOH A 62 133 124 HOH HOH . 
E 4 HOH A 63 134 125 HOH HOH . 
E 4 HOH A 64 135 126 HOH HOH . 
E 4 HOH A 65 136 127 HOH HOH . 
E 4 HOH A 66 137 130 HOH HOH . 
E 4 HOH A 67 138 131 HOH HOH . 
E 4 HOH A 68 139 132 HOH HOH . 
E 4 HOH A 69 140 133 HOH HOH . 
E 4 HOH A 70 141 134 HOH HOH . 
E 4 HOH A 71 142 135 HOH HOH . 
F 4 HOH B 1 1002 1 HOH HOH . 
F 4 HOH B 2 1003 5 HOH HOH . 
F 4 HOH B 3 1004 7 HOH HOH . 
F 4 HOH B 4 1005 8 HOH HOH . 
F 4 HOH B 5 1006 11 HOH HOH . 
F 4 HOH B 6 1007 12 HOH HOH . 
F 4 HOH B 7 1008 13 HOH HOH . 
F 4 HOH B 8 1009 15 HOH HOH . 
F 4 HOH B 9 1010 17 HOH HOH . 
F 4 HOH B 10 1011 18 HOH HOH . 
F 4 HOH B 11 1012 20 HOH HOH . 
F 4 HOH B 12 1013 24 HOH HOH . 
F 4 HOH B 13 1014 25 HOH HOH . 
F 4 HOH B 14 1015 27 HOH HOH . 
F 4 HOH B 15 1016 28 HOH HOH . 
F 4 HOH B 16 1017 29 HOH HOH . 
F 4 HOH B 17 1018 30 HOH HOH . 
F 4 HOH B 18 1019 32 HOH HOH . 
F 4 HOH B 19 1020 33 HOH HOH . 
F 4 HOH B 20 1021 35 HOH HOH . 
F 4 HOH B 21 1022 36 HOH HOH . 
F 4 HOH B 22 1023 37 HOH HOH . 
F 4 HOH B 23 1024 38 HOH HOH . 
F 4 HOH B 24 1025 39 HOH HOH . 
F 4 HOH B 25 1026 43 HOH HOH . 
F 4 HOH B 26 1027 47 HOH HOH . 
F 4 HOH B 27 1028 51 HOH HOH . 
F 4 HOH B 28 1029 53 HOH HOH . 
F 4 HOH B 29 1030 54 HOH HOH . 
F 4 HOH B 30 1031 55 HOH HOH . 
F 4 HOH B 31 1032 56 HOH HOH . 
F 4 HOH B 32 1033 62 HOH HOH . 
F 4 HOH B 33 1034 63 HOH HOH . 
F 4 HOH B 34 1035 64 HOH HOH . 
F 4 HOH B 35 1036 65 HOH HOH . 
F 4 HOH B 36 1037 71 HOH HOH . 
F 4 HOH B 37 1038 75 HOH HOH . 
F 4 HOH B 38 1039 76 HOH HOH . 
F 4 HOH B 39 1040 77 HOH HOH . 
F 4 HOH B 40 1041 78 HOH HOH . 
F 4 HOH B 41 1042 79 HOH HOH . 
F 4 HOH B 42 1043 84 HOH HOH . 
F 4 HOH B 43 1044 86 HOH HOH . 
F 4 HOH B 44 1045 89 HOH HOH . 
F 4 HOH B 45 1046 91 HOH HOH . 
F 4 HOH B 46 1047 93 HOH HOH . 
F 4 HOH B 47 1048 96 HOH HOH . 
F 4 HOH B 48 1049 98 HOH HOH . 
F 4 HOH B 49 1050 99 HOH HOH . 
F 4 HOH B 50 1051 101 HOH HOH . 
F 4 HOH B 51 1052 102 HOH HOH . 
F 4 HOH B 52 1053 103 HOH HOH . 
F 4 HOH B 53 1054 106 HOH HOH . 
F 4 HOH B 54 1055 107 HOH HOH . 
F 4 HOH B 55 1056 114 HOH HOH . 
F 4 HOH B 56 1057 115 HOH HOH . 
F 4 HOH B 57 1058 116 HOH HOH . 
F 4 HOH B 58 1059 118 HOH HOH . 
F 4 HOH B 59 1060 119 HOH HOH . 
F 4 HOH B 60 1061 120 HOH HOH . 
F 4 HOH B 61 1062 121 HOH HOH . 
F 4 HOH B 62 1063 123 HOH HOH . 
F 4 HOH B 63 1064 128 HOH HOH . 
F 4 HOH B 64 1065 129 HOH HOH . 
F 4 HOH B 65 1066 136 HOH HOH . 
F 4 HOH B 66 1067 137 HOH HOH . 
F 4 HOH B 67 1068 138 HOH HOH . 
F 4 HOH B 68 1069 139 HOH HOH . 
F 4 HOH B 69 1070 140 HOH HOH . 
F 4 HOH B 70 1071 141 HOH HOH . 
F 4 HOH B 71 1072 142 HOH HOH . 
F 4 HOH B 72 1073 143 HOH HOH . 
F 4 HOH B 73 1074 144 HOH HOH . 
F 4 HOH B 74 1075 145 HOH HOH . 
F 4 HOH B 75 1076 146 HOH HOH . 
F 4 HOH B 76 1077 147 HOH HOH . 
F 4 HOH B 77 1078 148 HOH HOH . 
F 4 HOH B 78 1079 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HTG . . . D 3 8.508 3.92 -9.877 0.5 11.11 ? C1 HTG 1001 B 1 
HETATM 2 S S1 HTG . . . D 3 8.246 3.417 -8.1 0.5 11.44 ? S1 HTG 1001 B 1 
HETATM 3 C C2 HTG . . . D 3 7.158 3.649 -10.667 0.5 12.35 ? C2 HTG 1001 B 1 
HETATM 4 O O2 HTG . . . D 3 6.913 2.25 -10.758 0.5 14.52 ? O2 HTG 1001 B 1 
HETATM 5 C C3 HTG . . . D 3 7.276 4.199 -12.165 0.5 14.54 ? C3 HTG 1001 B 1 
HETATM 6 O O3 HTG . . . D 3 5.97 4.058 -12.795 0.5 18.9 ? O3 HTG 1001 B 1 
HETATM 7 C C4 HTG . . . D 3 7.618 5.779 -12.089 0.5 13.88 ? C4 HTG 1001 B 1 
HETATM 8 O O4 HTG . . . D 3 7.874 6.162 -13.453 0.5 20.46 ? O4 HTG 1001 B 1 
HETATM 9 C C5 HTG . . . D 3 8.965 5.994 -11.246 0.5 10.79 ? C5 HTG 1001 B 1 
HETATM 10 O O5 HTG . . . D 3 8.638 5.495 -9.84 0.5 12.26 ? O5 HTG 1001 B 1 
HETATM 11 C C6 HTG . . . D 3 9.351 7.509 -11.122 0.5 17.11 ? C6 HTG 1001 B 1 
HETATM 12 O O6 HTG . . . D 3 10.657 7.555 -10.523 0.5 16.28 ? O6 HTG 1001 B 1 
HETATM 13 C C1' HTG . . . D 3 6.952 4.553 -7.251 0.5 12.6 ? C1' HTG 1001 B 1 
HETATM 14 C C2' HTG . . . D 3 7.676 5.791 -6.727 0.5 12.42 ? C2' HTG 1001 B 1 
HETATM 15 C C3' HTG . . . D 3 6.679 6.835 -6.206 0.5 13.09 ? C3' HTG 1001 B 1 
HETATM 16 C C4' HTG . . . D 3 7.343 7.997 -5.501 0.5 14.61 ? C4' HTG 1001 B 1 
HETATM 17 C C5' HTG . . . D 3 6.404 9.099 -5.097 0.5 17.63 ? C5' HTG 1001 B 1 
HETATM 18 C C6' HTG . . . D 3 7.083 10.446 -5.256 0.5 20.01 ? C6' HTG 1001 B 1 
HETATM 19 C C7' HTG . . . D 3 6.316 11.516 -4.516 0.5 16.99 ? C7' HTG 1001 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           19 
#