data_2PLA # _model_server_result.job_id gxSZajHVKoNmOvO5sTa7lg _model_server_result.datetime_utc '2025-03-04 15:02:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 2PLA # _exptl.entry_id 2PLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PLA _cell.length_a 139.1 _cell.length_b 139.1 _cell.length_c 109.62 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 2PLA _atom_sites.fract_transf_matrix[1][1] 0.007189 _atom_sites.fract_transf_matrix[1][2] 0.004151 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 501 501 PO4 PO4 . D 2 PO4 A 1 503 503 PO4 PO4 . E 3 NAD A 1 401 401 NAD NAD . F 2 PO4 B 1 502 502 PO4 PO4 . G 4 CL B 1 601 601 CL CL . H 3 NAD B 1 401 401 NAD NAD . I 5 HOH A 1 504 2 HOH HOH . I 5 HOH A 2 505 4 HOH HOH . I 5 HOH A 3 506 5 HOH HOH . I 5 HOH A 4 507 7 HOH HOH . I 5 HOH A 5 508 8 HOH HOH . I 5 HOH A 6 509 9 HOH HOH . I 5 HOH A 7 510 11 HOH HOH . I 5 HOH A 8 511 12 HOH HOH . I 5 HOH A 9 512 14 HOH HOH . I 5 HOH A 10 513 15 HOH HOH . I 5 HOH A 11 514 16 HOH HOH . I 5 HOH A 12 515 17 HOH HOH . I 5 HOH A 13 516 18 HOH HOH . I 5 HOH A 14 517 20 HOH HOH . I 5 HOH A 15 518 22 HOH HOH . I 5 HOH A 16 519 23 HOH HOH . I 5 HOH A 17 520 24 HOH HOH . I 5 HOH A 18 521 25 HOH HOH . I 5 HOH A 19 522 27 HOH HOH . I 5 HOH A 20 523 31 HOH HOH . I 5 HOH A 21 524 32 HOH HOH . I 5 HOH A 22 525 33 HOH HOH . I 5 HOH A 23 526 36 HOH HOH . I 5 HOH A 24 527 37 HOH HOH . I 5 HOH A 25 528 38 HOH HOH . I 5 HOH A 26 529 39 HOH HOH . I 5 HOH A 27 530 40 HOH HOH . I 5 HOH A 28 531 41 HOH HOH . I 5 HOH A 29 532 43 HOH HOH . I 5 HOH A 30 533 45 HOH HOH . I 5 HOH A 31 534 47 HOH HOH . I 5 HOH A 32 535 48 HOH HOH . I 5 HOH A 33 536 50 HOH HOH . I 5 HOH A 34 537 51 HOH HOH . I 5 HOH A 35 538 52 HOH HOH . I 5 HOH A 36 539 53 HOH HOH . I 5 HOH A 37 540 55 HOH HOH . I 5 HOH A 38 541 56 HOH HOH . I 5 HOH A 39 542 60 HOH HOH . I 5 HOH A 40 543 61 HOH HOH . I 5 HOH A 41 544 62 HOH HOH . I 5 HOH A 42 545 64 HOH HOH . I 5 HOH A 43 546 67 HOH HOH . I 5 HOH A 44 547 69 HOH HOH . I 5 HOH A 45 548 70 HOH HOH . I 5 HOH A 46 549 71 HOH HOH . I 5 HOH A 47 550 72 HOH HOH . I 5 HOH A 48 551 74 HOH HOH . I 5 HOH A 49 552 75 HOH HOH . I 5 HOH A 50 553 76 HOH HOH . I 5 HOH A 51 554 79 HOH HOH . I 5 HOH A 52 555 80 HOH HOH . I 5 HOH A 53 556 82 HOH HOH . I 5 HOH A 54 557 83 HOH HOH . I 5 HOH A 55 558 84 HOH HOH . I 5 HOH A 56 559 85 HOH HOH . I 5 HOH A 57 560 87 HOH HOH . I 5 HOH A 58 561 90 HOH HOH . I 5 HOH A 59 562 97 HOH HOH . I 5 HOH A 60 563 98 HOH HOH . I 5 HOH A 61 564 99 HOH HOH . I 5 HOH A 62 565 100 HOH HOH . I 5 HOH A 63 566 101 HOH HOH . I 5 HOH A 64 567 102 HOH HOH . I 5 HOH A 65 568 103 HOH HOH . I 5 HOH A 66 569 104 HOH HOH . I 5 HOH A 67 570 105 HOH HOH . I 5 HOH A 68 571 106 HOH HOH . I 5 HOH A 69 572 107 HOH HOH . I 5 HOH A 70 573 110 HOH HOH . I 5 HOH A 71 574 111 HOH HOH . I 5 HOH A 72 575 124 HOH HOH . I 5 HOH A 73 576 125 HOH HOH . I 5 HOH A 74 577 126 HOH HOH . I 5 HOH A 75 578 127 HOH HOH . I 5 HOH A 76 579 128 HOH HOH . I 5 HOH A 77 580 129 HOH HOH . I 5 HOH A 78 581 130 HOH HOH . I 5 HOH A 79 582 131 HOH HOH . I 5 HOH A 80 583 132 HOH HOH . I 5 HOH A 81 584 133 HOH HOH . I 5 HOH A 82 585 134 HOH HOH . I 5 HOH A 83 586 135 HOH HOH . I 5 HOH A 84 587 136 HOH HOH . I 5 HOH A 85 588 137 HOH HOH . I 5 HOH A 86 589 138 HOH HOH . I 5 HOH A 87 590 139 HOH HOH . I 5 HOH A 88 591 141 HOH HOH . J 5 HOH B 1 602 1 HOH HOH . J 5 HOH B 2 603 3 HOH HOH . J 5 HOH B 3 604 6 HOH HOH . J 5 HOH B 4 605 10 HOH HOH . J 5 HOH B 5 606 13 HOH HOH . J 5 HOH B 6 607 19 HOH HOH . J 5 HOH B 7 608 21 HOH HOH . J 5 HOH B 8 609 26 HOH HOH . J 5 HOH B 9 610 28 HOH HOH . J 5 HOH B 10 611 29 HOH HOH . J 5 HOH B 11 612 30 HOH HOH . J 5 HOH B 12 613 34 HOH HOH . J 5 HOH B 13 614 35 HOH HOH . J 5 HOH B 14 615 42 HOH HOH . J 5 HOH B 15 616 44 HOH HOH . J 5 HOH B 16 617 46 HOH HOH . J 5 HOH B 17 618 49 HOH HOH . J 5 HOH B 18 619 54 HOH HOH . J 5 HOH B 19 620 57 HOH HOH . J 5 HOH B 20 621 58 HOH HOH . J 5 HOH B 21 622 59 HOH HOH . J 5 HOH B 22 623 63 HOH HOH . J 5 HOH B 23 624 65 HOH HOH . J 5 HOH B 24 625 66 HOH HOH . J 5 HOH B 25 626 68 HOH HOH . J 5 HOH B 26 627 73 HOH HOH . J 5 HOH B 27 628 77 HOH HOH . J 5 HOH B 28 629 78 HOH HOH . J 5 HOH B 29 630 81 HOH HOH . J 5 HOH B 30 631 86 HOH HOH . J 5 HOH B 31 632 88 HOH HOH . J 5 HOH B 32 633 89 HOH HOH . J 5 HOH B 33 634 91 HOH HOH . J 5 HOH B 34 635 92 HOH HOH . J 5 HOH B 35 636 93 HOH HOH . J 5 HOH B 36 637 94 HOH HOH . J 5 HOH B 37 638 95 HOH HOH . J 5 HOH B 38 639 96 HOH HOH . J 5 HOH B 39 640 108 HOH HOH . J 5 HOH B 40 641 109 HOH HOH . J 5 HOH B 41 642 112 HOH HOH . J 5 HOH B 42 643 113 HOH HOH . J 5 HOH B 43 644 114 HOH HOH . J 5 HOH B 44 645 115 HOH HOH . J 5 HOH B 45 646 116 HOH HOH . J 5 HOH B 46 647 117 HOH HOH . J 5 HOH B 47 648 118 HOH HOH . J 5 HOH B 48 649 119 HOH HOH . J 5 HOH B 49 650 120 HOH HOH . J 5 HOH B 50 651 121 HOH HOH . J 5 HOH B 51 652 122 HOH HOH . J 5 HOH B 52 653 123 HOH HOH . J 5 HOH B 53 654 140 HOH HOH . J 5 HOH B 54 655 142 HOH HOH . J 5 HOH B 55 656 143 HOH HOH . J 5 HOH B 56 657 144 HOH HOH . J 5 HOH B 57 658 145 HOH HOH . J 5 HOH B 58 659 146 HOH HOH . J 5 HOH B 59 660 147 HOH HOH . J 5 HOH B 60 661 148 HOH HOH . J 5 HOH B 61 662 149 HOH HOH . J 5 HOH B 62 663 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 59.524 -33.4 17.986 1 59.54 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . E 3 60.81 -33.99 18.373 1 56.98 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . E 3 59.148 -33.76 16.603 1 62.54 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . E 3 59.54 -31.801 17.904 1 61.76 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . E 3 60.033 -30.866 18.809 1 64.3 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . E 3 58.889 -30.041 19.411 1 65.15 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . E 3 59.45 -29.457 20.556 1 67.42 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . E 3 58.318 -28.863 18.626 1 65.15 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . E 3 57.032 -29.147 18.132 1 64.08 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . E 3 58.255 -27.694 19.613 1 66.97 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . E 3 56.966 -27.168 19.862 1 64.8 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . E 3 58.736 -28.311 20.899 1 69.57 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . E 3 59.634 -27.432 21.642 1 71.53 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . E 3 60.897 -27.044 21.29 1 71.79 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . E 3 61.357 -26.248 22.274 1 72.02 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . E 3 60.414 -26.149 23.248 1 72.94 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . E 3 60.372 -25.471 24.468 1 72.19 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . E 3 61.467 -24.892 24.943 1 72.17 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . E 3 59.253 -25.576 25.263 1 71.87 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . E 3 58.171 -26.335 24.836 1 72.44 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . E 3 58.21 -27.008 23.628 1 72.18 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . E 3 59.322 -26.907 22.859 1 72.28 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . E 3 58.276 -33.831 18.91 1 58.06 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . E 3 57.387 -35.147 18.651 1 56.04 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . E 3 57.889 -35.997 17.542 1 58 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . E 3 55.967 -34.754 18.625 1 54.26 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . E 3 57.776 -35.989 19.974 1 56.77 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . E 3 56.895 -36.109 21.071 1 55.12 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . E 3 57.074 -37.447 21.755 1 54.03 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . E 3 56.577 -38.46 20.91 1 54.27 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . E 3 58.511 -37.814 22.041 1 53.83 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . E 3 58.575 -38.395 23.323 1 54.02 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . E 3 58.849 -38.829 20.972 1 53.25 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . E 3 59.814 -39.761 21.367 1 53.38 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . E 3 57.516 -39.51 20.778 1 53.52 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . E 3 57.294 -40.197 19.482 1 54.3 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . E 3 57.768 -39.678 18.293 1 53.78 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . E 3 57.51 -40.348 17.094 1 53.55 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . E 3 57.934 -39.761 15.78 1 52.04 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . E 3 58.211 -40.629 14.725 1 54.64 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . E 3 58.057 -38.453 15.604 1 52.7 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . E 3 56.773 -41.535 17.102 1 53.4 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . E 3 56.284 -42.032 18.311 1 53.61 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . E 3 56.557 -41.361 19.496 1 53.75 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #