data_2PLW # _model_server_result.job_id NG5HuI3JUSdzcS0TXbl02A _model_server_result.datetime_utc '2025-03-04 15:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2plw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":203}' # _entry.id 2PLW # _exptl.entry_id 2PLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PLW _cell.length_a 42.595 _cell.length_b 59.798 _cell.length_c 71.295 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 2PLW _atom_sites.fract_transf_matrix[1][1] 0.023477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 202 2 SO4 SO4 . C 3 SAM A 1 203 1 SAM SAM . D 4 HOH A 1 204 3 HOH HOH . D 4 HOH A 2 205 7 HOH HOH . D 4 HOH A 3 206 9 HOH HOH . D 4 HOH A 4 207 10 HOH HOH . D 4 HOH A 5 208 11 HOH HOH . D 4 HOH A 6 209 13 HOH HOH . D 4 HOH A 7 210 15 HOH HOH . D 4 HOH A 8 211 16 HOH HOH . D 4 HOH A 9 212 17 HOH HOH . D 4 HOH A 10 213 18 HOH HOH . D 4 HOH A 11 214 22 HOH HOH . D 4 HOH A 12 215 24 HOH HOH . D 4 HOH A 13 216 26 HOH HOH . D 4 HOH A 14 217 30 HOH HOH . D 4 HOH A 15 218 31 HOH HOH . D 4 HOH A 16 219 33 HOH HOH . D 4 HOH A 17 220 35 HOH HOH . D 4 HOH A 18 221 36 HOH HOH . D 4 HOH A 19 222 38 HOH HOH . D 4 HOH A 20 223 39 HOH HOH . D 4 HOH A 21 224 40 HOH HOH . D 4 HOH A 22 225 41 HOH HOH . D 4 HOH A 23 226 44 HOH HOH . D 4 HOH A 24 227 45 HOH HOH . D 4 HOH A 25 228 46 HOH HOH . D 4 HOH A 26 229 48 HOH HOH . D 4 HOH A 27 230 49 HOH HOH . D 4 HOH A 28 231 51 HOH HOH . D 4 HOH A 29 232 52 HOH HOH . D 4 HOH A 30 233 53 HOH HOH . D 4 HOH A 31 234 54 HOH HOH . D 4 HOH A 32 235 55 HOH HOH . D 4 HOH A 33 236 56 HOH HOH . D 4 HOH A 34 237 57 HOH HOH . D 4 HOH A 35 238 58 HOH HOH . D 4 HOH A 36 239 60 HOH HOH . D 4 HOH A 37 240 61 HOH HOH . D 4 HOH A 38 241 64 HOH HOH . D 4 HOH A 39 242 65 HOH HOH . D 4 HOH A 40 243 66 HOH HOH . D 4 HOH A 41 244 67 HOH HOH . D 4 HOH A 42 245 69 HOH HOH . D 4 HOH A 43 246 71 HOH HOH . D 4 HOH A 44 247 72 HOH HOH . D 4 HOH A 45 248 73 HOH HOH . D 4 HOH A 46 249 75 HOH HOH . D 4 HOH A 47 250 76 HOH HOH . D 4 HOH A 48 251 77 HOH HOH . D 4 HOH A 49 252 78 HOH HOH . D 4 HOH A 50 253 80 HOH HOH . D 4 HOH A 51 254 82 HOH HOH . D 4 HOH A 52 255 84 HOH HOH . D 4 HOH A 53 256 86 HOH HOH . D 4 HOH A 54 257 87 HOH HOH . D 4 HOH A 55 258 88 HOH HOH . D 4 HOH A 56 259 89 HOH HOH . D 4 HOH A 57 260 90 HOH HOH . D 4 HOH A 58 261 92 HOH HOH . D 4 HOH A 59 262 93 HOH HOH . D 4 HOH A 60 263 94 HOH HOH . D 4 HOH A 61 264 95 HOH HOH . D 4 HOH A 62 265 96 HOH HOH . D 4 HOH A 63 266 97 HOH HOH . D 4 HOH A 64 267 98 HOH HOH . D 4 HOH A 65 268 100 HOH HOH . D 4 HOH A 66 269 102 HOH HOH . D 4 HOH A 67 270 105 HOH HOH . D 4 HOH A 68 271 107 HOH HOH . D 4 HOH A 69 272 108 HOH HOH . D 4 HOH A 70 273 109 HOH HOH . D 4 HOH A 71 274 110 HOH HOH . D 4 HOH A 72 275 111 HOH HOH . D 4 HOH A 73 276 112 HOH HOH . D 4 HOH A 74 277 113 HOH HOH . D 4 HOH A 75 278 114 HOH HOH . D 4 HOH A 76 279 115 HOH HOH . D 4 HOH A 77 280 116 HOH HOH . D 4 HOH A 78 281 117 HOH HOH . D 4 HOH A 79 282 118 HOH HOH . D 4 HOH A 80 283 119 HOH HOH . D 4 HOH A 81 284 121 HOH HOH . D 4 HOH A 82 285 123 HOH HOH . D 4 HOH A 83 286 124 HOH HOH . D 4 HOH A 84 287 126 HOH HOH . D 4 HOH A 85 288 127 HOH HOH . D 4 HOH A 86 289 128 HOH HOH . D 4 HOH A 87 290 130 HOH HOH . D 4 HOH A 88 291 133 HOH HOH . D 4 HOH A 89 292 134 HOH HOH . D 4 HOH A 90 293 135 HOH HOH . D 4 HOH A 91 294 136 HOH HOH . D 4 HOH A 92 295 138 HOH HOH . D 4 HOH A 93 296 139 HOH HOH . D 4 HOH A 94 297 140 HOH HOH . D 4 HOH A 95 298 142 HOH HOH . D 4 HOH A 96 299 143 HOH HOH . D 4 HOH A 97 300 144 HOH HOH . D 4 HOH A 98 301 145 HOH HOH . D 4 HOH A 99 302 146 HOH HOH . D 4 HOH A 100 303 148 HOH HOH . D 4 HOH A 101 304 151 HOH HOH . D 4 HOH A 102 305 152 HOH HOH . D 4 HOH A 103 306 153 HOH HOH . D 4 HOH A 104 307 155 HOH HOH . D 4 HOH A 105 308 156 HOH HOH . D 4 HOH A 106 309 157 HOH HOH . D 4 HOH A 107 310 158 HOH HOH . D 4 HOH A 108 311 160 HOH HOH . D 4 HOH A 109 312 161 HOH HOH . D 4 HOH A 110 313 163 HOH HOH . D 4 HOH A 111 314 164 HOH HOH . D 4 HOH A 112 315 166 HOH HOH . D 4 HOH A 113 316 167 HOH HOH . D 4 HOH A 114 317 168 HOH HOH . D 4 HOH A 115 318 169 HOH HOH . D 4 HOH A 116 319 170 HOH HOH . D 4 HOH A 117 320 173 HOH HOH . D 4 HOH A 118 321 175 HOH HOH . D 4 HOH A 119 322 176 HOH HOH . D 4 HOH A 120 323 177 HOH HOH . D 4 HOH A 121 324 178 HOH HOH . D 4 HOH A 122 325 179 HOH HOH . D 4 HOH A 123 326 182 HOH HOH . D 4 HOH A 124 327 183 HOH HOH . D 4 HOH A 125 328 184 HOH HOH . D 4 HOH A 126 329 185 HOH HOH . D 4 HOH A 127 330 187 HOH HOH . D 4 HOH A 128 331 188 HOH HOH . D 4 HOH A 129 332 189 HOH HOH . D 4 HOH A 130 333 190 HOH HOH . D 4 HOH A 131 334 191 HOH HOH . D 4 HOH A 132 335 193 HOH HOH . D 4 HOH A 133 336 194 HOH HOH . D 4 HOH A 134 337 195 HOH HOH . D 4 HOH A 135 338 196 HOH HOH . D 4 HOH A 136 339 197 HOH HOH . D 4 HOH A 137 340 198 HOH HOH . D 4 HOH A 138 341 199 HOH HOH . D 4 HOH A 139 342 200 HOH HOH . D 4 HOH A 140 343 201 HOH HOH . D 4 HOH A 141 344 202 HOH HOH . D 4 HOH A 142 345 203 HOH HOH . D 4 HOH A 143 346 208 HOH HOH . D 4 HOH A 144 347 211 HOH HOH . D 4 HOH A 145 348 213 HOH HOH . D 4 HOH A 146 349 214 HOH HOH . D 4 HOH A 147 350 215 HOH HOH . D 4 HOH A 148 351 216 HOH HOH . D 4 HOH A 149 352 221 HOH HOH . D 4 HOH A 150 353 222 HOH HOH . D 4 HOH A 151 354 224 HOH HOH . D 4 HOH A 152 355 225 HOH HOH . D 4 HOH A 153 356 226 HOH HOH . D 4 HOH A 154 357 227 HOH HOH . D 4 HOH A 155 358 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 3.723 35.735 8.699 1 21.44 ? N SAM 203 A 1 HETATM 2 C CA SAM . . . C 3 4.517 36.634 9.603 1 21.54 ? CA SAM 203 A 1 HETATM 3 C C SAM . . . C 3 3.74 36.987 10.872 1 21.26 ? C SAM 203 A 1 HETATM 4 O O SAM . . . C 3 2.524 36.792 10.899 1 21.25 ? O SAM 203 A 1 HETATM 5 O OXT SAM . . . C 3 4.285 37.436 11.888 1 20.36 ? OXT SAM 203 A 1 HETATM 6 C CB SAM . . . C 3 4.917 37.901 8.836 1 21.36 ? CB SAM 203 A 1 HETATM 7 C CG SAM . . . C 3 5.97 37.522 7.796 1 23.28 ? CG SAM 203 A 1 HETATM 8 S SD SAM . . . C 3 6.87 38.908 7.074 1 28.18 ? SD SAM 203 A 1 HETATM 9 C CE SAM . . . C 3 5.536 39.599 6.083 1 27.41 ? CE SAM 203 A 1 HETATM 10 C C5' SAM . . . C 3 7.893 38.097 5.817 1 22.22 ? C5' SAM 203 A 1 HETATM 11 C C4' SAM . . . C 3 9.128 37.455 6.45 1 17.87 ? C4' SAM 203 A 1 HETATM 12 O O4' SAM . . . C 3 9.756 36.635 5.461 1 18.07 ? O4' SAM 203 A 1 HETATM 13 C C3' SAM . . . C 3 10.21 38.441 6.956 1 18.91 ? C3' SAM 203 A 1 HETATM 14 O O3' SAM . . . C 3 10.313 38.406 8.363 1 18.51 ? O3' SAM 203 A 1 HETATM 15 C C2' SAM . . . C 3 11.504 37.955 6.286 1 17.51 ? C2' SAM 203 A 1 HETATM 16 O O2' SAM . . . C 3 12.678 37.969 7.091 1 17.29 ? O2' SAM 203 A 1 HETATM 17 C C1' SAM . . . C 3 11.125 36.547 5.864 1 15.81 ? C1' SAM 203 A 1 HETATM 18 N N9 SAM . . . C 3 11.918 35.966 4.779 1 18.72 ? N9 SAM 203 A 1 HETATM 19 C C8 SAM . . . C 3 12.156 36.468 3.516 1 18.33 ? C8 SAM 203 A 1 HETATM 20 N N7 SAM . . . C 3 12.906 35.577 2.834 1 16.83 ? N7 SAM 203 A 1 HETATM 21 C C5 SAM . . . C 3 13.139 34.516 3.65 1 17.67 ? C5 SAM 203 A 1 HETATM 22 C C6 SAM . . . C 3 13.833 33.316 3.486 1 17.2 ? C6 SAM 203 A 1 HETATM 23 N N6 SAM . . . C 3 14.444 33.025 2.346 1 16.52 ? N6 SAM 203 A 1 HETATM 24 N N1 SAM . . . C 3 13.889 32.408 4.513 1 18.26 ? N1 SAM 203 A 1 HETATM 25 C C2 SAM . . . C 3 13.264 32.655 5.722 1 18.01 ? C2 SAM 203 A 1 HETATM 26 N N3 SAM . . . C 3 12.563 33.835 5.886 1 16.31 ? N3 SAM 203 A 1 HETATM 27 C C4 SAM . . . C 3 12.521 34.748 4.873 1 17.56 ? C4 SAM 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #