data_2PMF # _model_server_result.job_id fOu4RdjtFIgpSF0eWx27eA _model_server_result.datetime_utc '2025-03-01 19:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 2PMF # _exptl.entry_id 2PMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PMF _cell.length_a 91.412 _cell.length_b 91.412 _cell.length_c 246.814 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2PMF _atom_sites.fract_transf_matrix[1][1] 0.010939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 901 901 CL CL . C 3 GOL A 1 801 801 GOL GOL . D 4 HOH A 1 902 1 HOH HOH . D 4 HOH A 2 903 2 HOH HOH . D 4 HOH A 3 904 3 HOH HOH . D 4 HOH A 4 905 4 HOH HOH . D 4 HOH A 5 906 5 HOH HOH . D 4 HOH A 6 907 6 HOH HOH . D 4 HOH A 7 908 7 HOH HOH . D 4 HOH A 8 909 8 HOH HOH . D 4 HOH A 9 910 9 HOH HOH . D 4 HOH A 10 911 10 HOH HOH . D 4 HOH A 11 912 11 HOH HOH . D 4 HOH A 12 913 12 HOH HOH . D 4 HOH A 13 914 13 HOH HOH . D 4 HOH A 14 915 14 HOH HOH . D 4 HOH A 15 916 15 HOH HOH . D 4 HOH A 16 917 16 HOH HOH . D 4 HOH A 17 918 17 HOH HOH . D 4 HOH A 18 919 18 HOH HOH . D 4 HOH A 19 920 19 HOH HOH . D 4 HOH A 20 921 20 HOH HOH . D 4 HOH A 21 922 21 HOH HOH . D 4 HOH A 22 923 22 HOH HOH . D 4 HOH A 23 924 23 HOH HOH . D 4 HOH A 24 925 24 HOH HOH . D 4 HOH A 25 926 25 HOH HOH . D 4 HOH A 26 927 26 HOH HOH . D 4 HOH A 27 928 27 HOH HOH . D 4 HOH A 28 929 28 HOH HOH . D 4 HOH A 29 930 29 HOH HOH . D 4 HOH A 30 931 30 HOH HOH . D 4 HOH A 31 932 31 HOH HOH . D 4 HOH A 32 933 32 HOH HOH . D 4 HOH A 33 934 33 HOH HOH . D 4 HOH A 34 935 34 HOH HOH . D 4 HOH A 35 936 35 HOH HOH . D 4 HOH A 36 937 36 HOH HOH . D 4 HOH A 37 938 37 HOH HOH . D 4 HOH A 38 939 38 HOH HOH . D 4 HOH A 39 940 39 HOH HOH . D 4 HOH A 40 941 40 HOH HOH . D 4 HOH A 41 942 41 HOH HOH . D 4 HOH A 42 943 42 HOH HOH . D 4 HOH A 43 944 43 HOH HOH . D 4 HOH A 44 945 44 HOH HOH . D 4 HOH A 45 946 45 HOH HOH . D 4 HOH A 46 947 46 HOH HOH . D 4 HOH A 47 948 47 HOH HOH . D 4 HOH A 48 949 48 HOH HOH . D 4 HOH A 49 950 49 HOH HOH . D 4 HOH A 50 951 50 HOH HOH . D 4 HOH A 51 952 51 HOH HOH . D 4 HOH A 52 953 52 HOH HOH . D 4 HOH A 53 954 53 HOH HOH . D 4 HOH A 54 955 54 HOH HOH . D 4 HOH A 55 956 55 HOH HOH . D 4 HOH A 56 957 56 HOH HOH . D 4 HOH A 57 958 57 HOH HOH . D 4 HOH A 58 959 58 HOH HOH . D 4 HOH A 59 960 59 HOH HOH . D 4 HOH A 60 961 60 HOH HOH . D 4 HOH A 61 962 61 HOH HOH . D 4 HOH A 62 963 62 HOH HOH . D 4 HOH A 63 964 63 HOH HOH . D 4 HOH A 64 965 64 HOH HOH . D 4 HOH A 65 966 65 HOH HOH . D 4 HOH A 66 967 66 HOH HOH . D 4 HOH A 67 968 67 HOH HOH . D 4 HOH A 68 969 68 HOH HOH . D 4 HOH A 69 970 69 HOH HOH . D 4 HOH A 70 971 70 HOH HOH . D 4 HOH A 71 972 71 HOH HOH . D 4 HOH A 72 973 72 HOH HOH . D 4 HOH A 73 974 73 HOH HOH . D 4 HOH A 74 975 74 HOH HOH . D 4 HOH A 75 976 75 HOH HOH . D 4 HOH A 76 977 76 HOH HOH . D 4 HOH A 77 978 77 HOH HOH . D 4 HOH A 78 979 78 HOH HOH . D 4 HOH A 79 980 79 HOH HOH . D 4 HOH A 80 981 80 HOH HOH . D 4 HOH A 81 982 81 HOH HOH . D 4 HOH A 82 983 82 HOH HOH . D 4 HOH A 83 984 83 HOH HOH . D 4 HOH A 84 985 84 HOH HOH . D 4 HOH A 85 986 85 HOH HOH . D 4 HOH A 86 987 86 HOH HOH . D 4 HOH A 87 988 87 HOH HOH . D 4 HOH A 88 989 88 HOH HOH . D 4 HOH A 89 990 89 HOH HOH . D 4 HOH A 90 991 90 HOH HOH . D 4 HOH A 91 992 91 HOH HOH . D 4 HOH A 92 993 92 HOH HOH . D 4 HOH A 93 994 93 HOH HOH . D 4 HOH A 94 995 94 HOH HOH . D 4 HOH A 95 996 95 HOH HOH . D 4 HOH A 96 997 96 HOH HOH . D 4 HOH A 97 998 97 HOH HOH . D 4 HOH A 98 999 98 HOH HOH . D 4 HOH A 99 1000 99 HOH HOH . D 4 HOH A 100 1001 100 HOH HOH . D 4 HOH A 101 1002 101 HOH HOH . D 4 HOH A 102 1003 102 HOH HOH . D 4 HOH A 103 1004 103 HOH HOH . D 4 HOH A 104 1005 104 HOH HOH . D 4 HOH A 105 1006 105 HOH HOH . D 4 HOH A 106 1007 106 HOH HOH . D 4 HOH A 107 1008 107 HOH HOH . D 4 HOH A 108 1009 108 HOH HOH . D 4 HOH A 109 1010 109 HOH HOH . D 4 HOH A 110 1011 110 HOH HOH . D 4 HOH A 111 1012 111 HOH HOH . D 4 HOH A 112 1013 112 HOH HOH . D 4 HOH A 113 1014 113 HOH HOH . D 4 HOH A 114 1015 114 HOH HOH . D 4 HOH A 115 1016 115 HOH HOH . D 4 HOH A 116 1017 116 HOH HOH . D 4 HOH A 117 1018 117 HOH HOH . D 4 HOH A 118 1019 118 HOH HOH . D 4 HOH A 119 1020 119 HOH HOH . D 4 HOH A 120 1021 120 HOH HOH . D 4 HOH A 121 1022 121 HOH HOH . D 4 HOH A 122 1023 122 HOH HOH . D 4 HOH A 123 1024 123 HOH HOH . D 4 HOH A 124 1025 124 HOH HOH . D 4 HOH A 125 1026 125 HOH HOH . D 4 HOH A 126 1027 126 HOH HOH . D 4 HOH A 127 1028 127 HOH HOH . D 4 HOH A 128 1029 128 HOH HOH . D 4 HOH A 129 1030 129 HOH HOH . D 4 HOH A 130 1031 130 HOH HOH . D 4 HOH A 131 1032 131 HOH HOH . D 4 HOH A 132 1033 132 HOH HOH . D 4 HOH A 133 1034 133 HOH HOH . D 4 HOH A 134 1035 134 HOH HOH . D 4 HOH A 135 1036 135 HOH HOH . D 4 HOH A 136 1037 136 HOH HOH . D 4 HOH A 137 1038 137 HOH HOH . D 4 HOH A 138 1039 138 HOH HOH . D 4 HOH A 139 1040 139 HOH HOH . D 4 HOH A 140 1041 140 HOH HOH . D 4 HOH A 141 1042 141 HOH HOH . D 4 HOH A 142 1043 142 HOH HOH . D 4 HOH A 143 1044 143 HOH HOH . D 4 HOH A 144 1045 144 HOH HOH . D 4 HOH A 145 1046 145 HOH HOH . D 4 HOH A 146 1047 146 HOH HOH . D 4 HOH A 147 1048 147 HOH HOH . D 4 HOH A 148 1049 148 HOH HOH . D 4 HOH A 149 1050 149 HOH HOH . D 4 HOH A 150 1051 150 HOH HOH . D 4 HOH A 151 1052 151 HOH HOH . D 4 HOH A 152 1053 152 HOH HOH . D 4 HOH A 153 1054 153 HOH HOH . D 4 HOH A 154 1055 154 HOH HOH . D 4 HOH A 155 1056 155 HOH HOH . D 4 HOH A 156 1057 156 HOH HOH . D 4 HOH A 157 1058 157 HOH HOH . D 4 HOH A 158 1059 158 HOH HOH . D 4 HOH A 159 1060 159 HOH HOH . D 4 HOH A 160 1061 160 HOH HOH . D 4 HOH A 161 1062 161 HOH HOH . D 4 HOH A 162 1063 162 HOH HOH . D 4 HOH A 163 1064 163 HOH HOH . D 4 HOH A 164 1065 164 HOH HOH . D 4 HOH A 165 1066 165 HOH HOH . D 4 HOH A 166 1067 166 HOH HOH . D 4 HOH A 167 1068 167 HOH HOH . D 4 HOH A 168 1069 168 HOH HOH . D 4 HOH A 169 1070 169 HOH HOH . D 4 HOH A 170 1071 170 HOH HOH . D 4 HOH A 171 1072 171 HOH HOH . D 4 HOH A 172 1073 172 HOH HOH . D 4 HOH A 173 1074 173 HOH HOH . D 4 HOH A 174 1075 174 HOH HOH . D 4 HOH A 175 1076 175 HOH HOH . D 4 HOH A 176 1077 176 HOH HOH . D 4 HOH A 177 1078 177 HOH HOH . D 4 HOH A 178 1079 178 HOH HOH . D 4 HOH A 179 1080 179 HOH HOH . D 4 HOH A 180 1081 180 HOH HOH . D 4 HOH A 181 1082 181 HOH HOH . D 4 HOH A 182 1083 182 HOH HOH . D 4 HOH A 183 1084 183 HOH HOH . D 4 HOH A 184 1085 184 HOH HOH . D 4 HOH A 185 1086 185 HOH HOH . D 4 HOH A 186 1087 186 HOH HOH . D 4 HOH A 187 1088 187 HOH HOH . D 4 HOH A 188 1089 188 HOH HOH . D 4 HOH A 189 1090 189 HOH HOH . D 4 HOH A 190 1091 190 HOH HOH . D 4 HOH A 191 1092 191 HOH HOH . D 4 HOH A 192 1093 192 HOH HOH . D 4 HOH A 193 1094 193 HOH HOH . D 4 HOH A 194 1095 194 HOH HOH . D 4 HOH A 195 1096 195 HOH HOH . D 4 HOH A 196 1097 196 HOH HOH . D 4 HOH A 197 1098 197 HOH HOH . D 4 HOH A 198 1099 198 HOH HOH . D 4 HOH A 199 1100 199 HOH HOH . D 4 HOH A 200 1101 200 HOH HOH . D 4 HOH A 201 1102 201 HOH HOH . D 4 HOH A 202 1103 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 17.401 38.468 -22.42 1 74.58 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . C 3 16.732 39.679 -22.686 1 76.79 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . C 3 18.406 38.661 -21.293 1 75.47 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . C 3 18.574 40.034 -21.021 1 70.68 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . C 3 19.741 38.043 -21.692 1 75.73 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . C 3 19.693 36.645 -21.514 1 71.17 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #