data_2PMN # _model_server_result.job_id D6aM2zDXXe7NrziHezP-NA _model_server_result.datetime_utc '2025-07-30 16:12:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":344}' # _entry.id 2PMN # _exptl.entry_id 2PMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.376 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(6-{[(1S)-1-(HYDROXYMETHYL)-2-METHYLPROPYL]AMINO}IMIDAZO[1,2-B]PYRIDAZIN-3-YL)BENZONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PMN _cell.length_a 73.406 _cell.length_b 82.084 _cell.length_c 138.962 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 N5 O' _chem_comp.formula_weight 321.376 _chem_comp.id K51 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(6-{[(1S)-1-(HYDROXYMETHYL)-2-METHYLPROPYL]AMINO}IMIDAZO[1,2-B]PYRIDAZIN-3-YL)BENZONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C13 K51 trip 173 n n C13 C10 K51 sing 174 n n C10 C9 K51 sing 175 n y C10 C11 K51 doub 176 n y C11 C12 K51 sing 177 n y C11 H11 K51 sing 178 n n C12 C7 K51 doub 179 n y C12 H12 K51 sing 180 n n C7 C8 K51 sing 181 n y C7 C5 K51 sing 182 n y C8 C9 K51 doub 183 n y C8 H8 K51 sing 184 n n C9 H9 K51 sing 185 n n C5 N2 K51 sing 186 n y C5 C6 K51 doub 187 n y C6 N3 K51 sing 188 n y C6 H6 K51 sing 189 n n N3 C1 K51 doub 190 n y C1 C2 K51 sing 191 n y C1 N2 K51 sing 192 n y C2 C3 K51 doub 193 n y C2 H2 K51 sing 194 n n C3 C4 K51 sing 195 n y C3 H3 K51 sing 196 n n C4 N5 K51 sing 197 n n C4 N1 K51 doub 198 n y N1 N2 K51 sing 199 n y N5 C14 K51 sing 200 n n N5 HN5 K51 sing 201 n n C14 C16 K51 sing 202 n n C14 C15 K51 sing 203 n n C14 H14 K51 sing 204 n n C15 O1 K51 sing 205 n n C15 H151 K51 sing 206 n n C15 H152 K51 sing 207 n n O1 HO1 K51 sing 208 n n C16 C18 K51 sing 209 n n C16 C17 K51 sing 210 n n C16 H16 K51 sing 211 n n C17 H171 K51 sing 212 n n C17 H172 K51 sing 213 n n C17 H173 K51 sing 214 n n C18 H181 K51 sing 215 n n C18 H182 K51 sing 216 n n C18 H183 K51 sing 217 n n # _atom_sites.entry_id 2PMN _atom_sites.fract_transf_matrix[1][1] 0.013623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K51 X 1 344 1 K51 K51 . C 3 HOH X 1 345 1 HOH HOH . C 3 HOH X 2 346 2 HOH HOH . C 3 HOH X 3 347 3 HOH HOH . C 3 HOH X 4 348 4 HOH HOH . C 3 HOH X 5 349 5 HOH HOH . C 3 HOH X 6 350 6 HOH HOH . C 3 HOH X 7 351 7 HOH HOH . C 3 HOH X 8 352 8 HOH HOH . C 3 HOH X 9 353 9 HOH HOH . C 3 HOH X 10 354 10 HOH HOH . C 3 HOH X 11 355 12 HOH HOH . C 3 HOH X 12 356 13 HOH HOH . C 3 HOH X 13 357 14 HOH HOH . C 3 HOH X 14 358 15 HOH HOH . C 3 HOH X 15 359 17 HOH HOH . C 3 HOH X 16 360 18 HOH HOH . C 3 HOH X 17 361 19 HOH HOH . C 3 HOH X 18 362 20 HOH HOH . C 3 HOH X 19 363 21 HOH HOH . C 3 HOH X 20 364 22 HOH HOH . C 3 HOH X 21 365 24 HOH HOH . C 3 HOH X 22 366 25 HOH HOH . C 3 HOH X 23 367 26 HOH HOH . C 3 HOH X 24 368 28 HOH HOH . C 3 HOH X 25 369 29 HOH HOH . C 3 HOH X 26 370 30 HOH HOH . C 3 HOH X 27 371 31 HOH HOH . C 3 HOH X 28 372 32 HOH HOH . C 3 HOH X 29 373 33 HOH HOH . C 3 HOH X 30 374 35 HOH HOH . C 3 HOH X 31 375 36 HOH HOH . C 3 HOH X 32 376 37 HOH HOH . C 3 HOH X 33 377 38 HOH HOH . C 3 HOH X 34 378 39 HOH HOH . C 3 HOH X 35 379 40 HOH HOH . C 3 HOH X 36 380 41 HOH HOH . C 3 HOH X 37 381 42 HOH HOH . C 3 HOH X 38 382 43 HOH HOH . C 3 HOH X 39 383 44 HOH HOH . C 3 HOH X 40 384 45 HOH HOH . C 3 HOH X 41 385 46 HOH HOH . C 3 HOH X 42 386 47 HOH HOH . C 3 HOH X 43 387 48 HOH HOH . C 3 HOH X 44 388 49 HOH HOH . C 3 HOH X 45 389 50 HOH HOH . C 3 HOH X 46 390 51 HOH HOH . C 3 HOH X 47 391 52 HOH HOH . C 3 HOH X 48 392 54 HOH HOH . C 3 HOH X 49 393 55 HOH HOH . C 3 HOH X 50 394 56 HOH HOH . C 3 HOH X 51 395 57 HOH HOH . C 3 HOH X 52 396 58 HOH HOH . C 3 HOH X 53 397 59 HOH HOH . C 3 HOH X 54 398 60 HOH HOH . C 3 HOH X 55 399 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 K51 . . . B 2 -7.01 -30.476 -16.116 1 37.28 ? N4 K51 344 X 1 HETATM 2 C C13 K51 . . . B 2 -7.923 -31.173 -16.292 1 37.12 ? C13 K51 344 X 1 HETATM 3 C C10 K51 . . . B 2 -8.979 -31.849 -16.567 1 37.34 ? C10 K51 344 X 1 HETATM 4 C C11 K51 . . . B 2 -9.411 -32.821 -15.675 1 37.16 ? C11 K51 344 X 1 HETATM 5 C C12 K51 . . . B 2 -10.555 -33.562 -15.957 1 37.74 ? C12 K51 344 X 1 HETATM 6 C C7 K51 . . . B 2 -11.267 -33.357 -17.134 1 37.45 ? C7 K51 344 X 1 HETATM 7 C C8 K51 . . . B 2 -10.838 -32.36 -18.018 1 38.59 ? C8 K51 344 X 1 HETATM 8 C C9 K51 . . . B 2 -9.687 -31.616 -17.747 1 37.96 ? C9 K51 344 X 1 HETATM 9 C C5 K51 . . . B 2 -12.524 -34.14 -17.349 1 37.38 ? C5 K51 344 X 1 HETATM 10 C C6 K51 . . . B 2 -13.378 -34.689 -16.417 1 37.69 ? C6 K51 344 X 1 HETATM 11 N N3 K51 . . . B 2 -14.4 -35.228 -17.124 1 38.05 ? N3 K51 344 X 1 HETATM 12 C C1 K51 . . . B 2 -14.199 -35 -18.439 1 36.96 ? C1 K51 344 X 1 HETATM 13 C C2 K51 . . . B 2 -14.934 -35.333 -19.564 1 36.65 ? C2 K51 344 X 1 HETATM 14 C C3 K51 . . . B 2 -14.463 -34.953 -20.806 1 37.06 ? C3 K51 344 X 1 HETATM 15 C C4 K51 . . . B 2 -13.269 -34.242 -20.915 1 37.83 ? C4 K51 344 X 1 HETATM 16 N N1 K51 . . . B 2 -12.566 -33.925 -19.805 1 38.4 ? N1 K51 344 X 1 HETATM 17 N N2 K51 . . . B 2 -13.06 -34.325 -18.562 1 37.2 ? N2 K51 344 X 1 HETATM 18 N N5 K51 . . . B 2 -12.82 -33.865 -22.13 1 37.62 ? N5 K51 344 X 1 HETATM 19 C C14 K51 . . . B 2 -11.432 -33.516 -22.346 1 38.1 ? C14 K51 344 X 1 HETATM 20 C C15 K51 . . . B 2 -11.248 -31.996 -22.259 1 37.36 ? C15 K51 344 X 1 HETATM 21 O O1 K51 . . . B 2 -12.163 -31.295 -23.108 1 37.44 ? O1 K51 344 X 1 HETATM 22 C C16 K51 . . . B 2 -10.996 -34.17 -23.661 1 38.95 ? C16 K51 344 X 1 HETATM 23 C C17 K51 . . . B 2 -10.404 -35.535 -23.342 1 39.46 ? C17 K51 344 X 1 HETATM 24 C C18 K51 . . . B 2 -10.029 -33.352 -24.518 1 39.4 ? C18 K51 344 X 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 24 #