data_2PMY # _model_server_result.job_id voPupeyqkNWVMY-ZzNvxYA _model_server_result.datetime_utc '2024-11-22 17:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 2PMY # _exptl.entry_id 2PMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PMY _cell.length_a 61.259 _cell.length_b 61.259 _cell.length_c 101.598 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,C,D,E,F,G,L 2 1,2 B,H,I,J,K,M 2 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 50.799 3 'crystal symmetry operation' 3_544 -y+1/2,x-1/2,z-1/4 0 -1 0 1 0 0 0 0 1 30.6295 -30.6295 -25.3995 4 'crystal symmetry operation' 5_545 -x+1/2,y-1/2,-z+3/4 -1 0 0 0 1 0 0 0 -1 30.6295 -30.6295 76.1985 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 37 A ASP 21 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc2 A OD1 ASN 39 A ASN 23 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 A OG SER 41 A SER 25 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A O ARG 43 A ARG 27 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 A OE1 GLU 45 A GLU 29 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 A OE1 GLU 48 A GLU 32 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 A OE2 GLU 48 A GLU 32 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.346 ? metalc ? metalc8 A OD1 ASP 71 A ASP 55 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 A OD1 ASP 73 A ASP 57 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc10 A OD1 ASP 75 A ASP 59 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc11 A O ALA 77 A ALA 61 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc12 A OE1 GLU 82 A GLU 66 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc13 A OE2 GLU 82 A GLU 66 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc14 B OD1 ASP 37 B ASP 21 1_555 H CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc15 B OD1 ASN 39 B ASN 23 1_555 H CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc16 B OG SER 41 B SER 25 1_555 H CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc17 B O ARG 43 B ARG 27 1_555 H CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc18 B OE2 GLU 45 B GLU 29 1_555 H CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc19 B OE1 GLU 45 B GLU 29 1_555 H CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.248 ? metalc ? metalc20 B OE2 GLU 48 B GLU 32 1_555 H CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc21 B OD1 ASP 71 B ASP 55 1_555 I CA CA . B CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc22 B OD2 ASP 73 B ASP 57 1_555 I CA CA . B CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc23 B OD1 ASP 75 B ASP 59 1_555 I CA CA . B CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc24 B O ALA 77 B ALA 61 1_555 I CA CA . B CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc25 B OE1 GLU 82 B GLU 66 1_555 I CA CA . B CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc26 B OE2 GLU 82 B GLU 66 1_555 I CA CA . B CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc27 I CA CA . B CA 104 1_555 M O HOH . B HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PMY _atom_sites.fract_transf_matrix[1][1] 0.01632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 102 102 CA CA . D 2 CA A 1 103 103 CA CA . E 3 SO4 A 1 105 105 SO4 SO4 . F 4 UNX A 1 201 201 UNX UNX . G 4 UNX A 1 202 202 UNX UNX . H 2 CA B 1 101 101 CA CA . I 2 CA B 1 104 104 CA CA . J 4 UNX B 1 203 203 UNX UNX . K 4 UNX B 1 204 204 UNX UNX . L 5 HOH A 1 203 1 HOH HOH . L 5 HOH A 2 204 2 HOH HOH . L 5 HOH A 3 205 4 HOH HOH . L 5 HOH A 4 206 6 HOH HOH . L 5 HOH A 5 207 10 HOH HOH . L 5 HOH A 6 208 11 HOH HOH . L 5 HOH A 7 209 12 HOH HOH . L 5 HOH A 8 210 14 HOH HOH . L 5 HOH A 9 211 15 HOH HOH . M 5 HOH B 1 205 3 HOH HOH . M 5 HOH B 2 206 5 HOH HOH . M 5 HOH B 3 207 7 HOH HOH . M 5 HOH B 4 208 8 HOH HOH . M 5 HOH B 5 209 9 HOH HOH . M 5 HOH B 6 210 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.852 _atom_site.Cartn_y 4.919 _atom_site.Cartn_z 40.712 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #