data_2PMZ # _model_server_result.job_id oMgi-IBVbReEY53UWos9Fw _model_server_result.datetime_utc '2025-02-05 06:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":1001}' # _entry.id 2PMZ # _exptl.entry_id 2PMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.92 _cell.angle_gamma 90 _cell.entry_id 2PMZ _cell.length_a 125.82 _cell.length_b 201.235 _cell.length_c 196.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? undecameric 11 author_defined_assembly 1 ? undecameric 11 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,W,X,Y,Z,AA,BA 1 1 L,M,N,O,P,Q,R,S,T,U,V,CA,DA,EA,FA,GA,HA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Z N N ? 14 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 D SG CYS 82 D CYS 82 1_555 D SG CYS 92 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 D SG CYS 85 D CYS 85 1_555 D SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 176 D CYS 176 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 J SG CYS 10 N CYS 10 1_555 J SG CYS 45 N CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 L SG CYS 58 Q CYS 58 1_555 L SG CYS 68 Q CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 O SG CYS 82 S CYS 82 1_555 O SG CYS 92 S CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 O SG CYS 85 S CYS 85 1_555 O SG CYS 89 S CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 O SG CYS 176 S CYS 176 1_555 O SG CYS 213 S CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 U SG CYS 10 Y CYS 10 1_555 U SG CYS 45 Y CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A SG CYS 58 A CYS 58 1_555 W ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc2 A OD1 ASN 63 A ASN 63 1_555 W ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 A SG CYS 68 A CYS 68 1_555 W ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc4 C SG CYS 1061 B CYS 1061 1_555 Y ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc5 C SG CYS 1064 B CYS 1064 1_555 Y ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc6 C SG CYS 1079 B CYS 1079 1_555 Y ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc7 D SG CYS 203 D CYS 203 1_555 Z FE3 F3S . D F3S 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 D SG CYS 209 D CYS 209 1_555 Z FE1 F3S . D F3S 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc9 J SG CYS 44 N CYS 44 1_555 AA ZN ZN . N ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc10 J SG CYS 45 N CYS 45 1_555 AA ZN ZN . N ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc11 K SG CYS 9 P CYS 9 1_555 BA ZN ZN . P ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc12 K SG CYS 26 P CYS 26 1_555 BA ZN ZN . P ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc13 K SG CYS 29 P CYS 29 1_555 BA ZN ZN . P ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc14 L OD1 ASN 63 Q ASN 63 1_555 CA ZN ZN . Q ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc15 L SG CYS 68 Q CYS 68 1_555 CA ZN ZN . Q ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc16 L OD1 ASP 456 Q ASP 456 1_555 DA MG MG . Q MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc17 L OD1 ASP 458 Q ASP 458 1_555 DA MG MG . Q MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc18 N SG CYS 1061 R CYS 1061 1_555 EA ZN ZN . R ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc19 N SG CYS 1064 R CYS 1064 1_555 EA ZN ZN . R ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc20 O SG CYS 203 S CYS 203 1_555 FA FE3 F3S . S F3S 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc21 O SG CYS 209 S CYS 209 1_555 FA FE1 F3S . S F3S 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc22 U SG CYS 7 Y CYS 7 1_555 GA ZN ZN . Y ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc23 U SG CYS 44 Y CYS 44 1_555 GA ZN ZN . Y ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc24 U SG CYS 45 Y CYS 45 1_555 GA ZN ZN . Y ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc25 V SG CYS 9 Z CYS 9 1_555 HA ZN ZN . Z ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc26 V SG CYS 26 Z CYS 26 1_555 HA ZN ZN . Z ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc27 V SG CYS 29 Z CYS 29 1_555 HA ZN ZN . Z ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 83 n n FE1 S2 F3S sing 84 n n FE1 S3 F3S sing 85 n n FE3 S1 F3S sing 86 n n FE3 S3 F3S sing 87 n n FE3 S4 F3S sing 88 n n FE4 S2 F3S sing 89 n n FE4 S3 F3S sing 90 n n FE4 S4 F3S sing 91 n n # _atom_sites.entry_id 2PMZ _atom_sites.fract_transf_matrix[1][1] 0.007948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001533 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 ZN A 1 1002 1002 ZN ZN . X 13 MG A 1 1003 1003 MG MG . Y 12 ZN B 1 2001 2001 ZN ZN . Z 14 F3S D 1 1001 1001 F3S F3S . AA 12 ZN N 1 1001 1001 ZN ZN . BA 12 ZN P 1 1001 1001 ZN ZN . CA 12 ZN Q 1 1002 1002 ZN ZN . DA 13 MG Q 1 1003 1003 MG MG . EA 12 ZN R 1 2001 2001 ZN ZN . FA 14 F3S S 1 1001 1001 F3S F3S . GA 12 ZN Y 1 1001 1001 ZN ZN . HA 12 ZN Z 1 1001 1001 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . FA 14 -27.937 69.965 51.012 1 111.96 ? FE1 F3S 1001 S 1 HETATM 2 FE FE3 F3S . . . FA 14 -29.355 68.064 52.269 1 111.61 ? FE3 F3S 1001 S 1 HETATM 3 FE FE4 F3S . . . FA 14 -27.574 67.322 50.351 1 113.03 ? FE4 F3S 1001 S 1 HETATM 4 S S1 F3S . . . FA 14 -30.12 70.073 51.592 1 111.93 ? S1 F3S 1001 S 1 HETATM 5 S S2 F3S . . . FA 14 -27.689 69.121 48.997 1 112.24 ? S2 F3S 1001 S 1 HETATM 6 S S3 F3S . . . FA 14 -27.039 68.175 52.181 1 112.3 ? S3 F3S 1001 S 1 HETATM 7 S S4 F3S . . . FA 14 -29.637 66.445 50.763 1 111.36 ? S4 F3S 1001 S 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #