data_2PN5 # _model_server_result.job_id rTlWkoOhFD7fbvcQKz6p6A _model_server_result.datetime_utc '2024-11-09 02:11:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1328}' # _entry.id 2PN5 # _exptl.entry_id 2PN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PN5 _cell.length_a 150.515 _cell.length_b 150.515 _cell.length_c 226.315 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 4 NAG 2 n B NAG 2 B 2 NAG C 5 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1196 A CYS 1196 1_555 A SG CYS 1262 A CYS 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 1305 A CYS 1305 1_555 A SG CYS 1317 A CYS 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 1308 A CYS 1308 1_555 A SG CYS 1313 A CYS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 178 A ASN 178 1_555 C C1 NAG . A NAG 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 221 A ASN 221 1_555 D C1 NAG . A NAG 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 291 A ASN 291 1_555 E C1 NAG . A NAG 1328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 616 A ASN 616 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A SG CYS 838 A CYS 838 1_555 A CD GLN 841 A GLN 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2PN5 _atom_sites.fract_transf_matrix[1][1] 0.006644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1326 1 NAG NAG . D 3 NAG A 1 1327 2 NAG NAG . E 3 NAG A 1 1328 3 NAG NAG . F 4 NA A 1 1331 1001 NA NA . G 4 NA A 1 1332 1002 NA NA . H 4 NA A 1 1333 1003 NA NA . I 5 HOH A 1 1334 1 HOH HOH . I 5 HOH A 2 1335 2 HOH HOH . I 5 HOH A 3 1336 3 HOH HOH . I 5 HOH A 4 1337 4 HOH HOH . I 5 HOH A 5 1338 5 HOH HOH . I 5 HOH A 6 1339 6 HOH HOH . I 5 HOH A 7 1340 7 HOH HOH . I 5 HOH A 8 1341 8 HOH HOH . I 5 HOH A 9 1342 9 HOH HOH . I 5 HOH A 10 1343 10 HOH HOH . I 5 HOH A 11 1344 11 HOH HOH . I 5 HOH A 12 1345 12 HOH HOH . I 5 HOH A 13 1346 13 HOH HOH . I 5 HOH A 14 1347 14 HOH HOH . I 5 HOH A 15 1348 15 HOH HOH . I 5 HOH A 16 1349 16 HOH HOH . I 5 HOH A 17 1350 17 HOH HOH . I 5 HOH A 18 1351 18 HOH HOH . I 5 HOH A 19 1352 19 HOH HOH . I 5 HOH A 20 1353 20 HOH HOH . I 5 HOH A 21 1354 21 HOH HOH . I 5 HOH A 22 1355 22 HOH HOH . I 5 HOH A 23 1356 23 HOH HOH . I 5 HOH A 24 1357 24 HOH HOH . I 5 HOH A 25 1358 25 HOH HOH . I 5 HOH A 26 1359 26 HOH HOH . I 5 HOH A 27 1360 27 HOH HOH . I 5 HOH A 28 1361 28 HOH HOH . I 5 HOH A 29 1362 29 HOH HOH . I 5 HOH A 30 1363 30 HOH HOH . I 5 HOH A 31 1364 31 HOH HOH . I 5 HOH A 32 1365 32 HOH HOH . I 5 HOH A 33 1366 33 HOH HOH . I 5 HOH A 34 1367 34 HOH HOH . I 5 HOH A 35 1368 35 HOH HOH . I 5 HOH A 36 1369 36 HOH HOH . I 5 HOH A 37 1370 37 HOH HOH . I 5 HOH A 38 1371 38 HOH HOH . I 5 HOH A 39 1372 39 HOH HOH . I 5 HOH A 40 1373 40 HOH HOH . I 5 HOH A 41 1374 41 HOH HOH . I 5 HOH A 42 1375 42 HOH HOH . I 5 HOH A 43 1376 43 HOH HOH . I 5 HOH A 44 1377 44 HOH HOH . I 5 HOH A 45 1378 45 HOH HOH . I 5 HOH A 46 1379 46 HOH HOH . I 5 HOH A 47 1380 47 HOH HOH . I 5 HOH A 48 1381 48 HOH HOH . I 5 HOH A 49 1382 49 HOH HOH . I 5 HOH A 50 1383 50 HOH HOH . I 5 HOH A 51 1384 51 HOH HOH . I 5 HOH A 52 1385 52 HOH HOH . I 5 HOH A 53 1386 53 HOH HOH . I 5 HOH A 54 1387 54 HOH HOH . I 5 HOH A 55 1388 55 HOH HOH . I 5 HOH A 56 1389 56 HOH HOH . I 5 HOH A 57 1390 57 HOH HOH . I 5 HOH A 58 1391 58 HOH HOH . I 5 HOH A 59 1392 59 HOH HOH . I 5 HOH A 60 1393 60 HOH HOH . I 5 HOH A 61 1394 61 HOH HOH . I 5 HOH A 62 1395 62 HOH HOH . I 5 HOH A 63 1396 63 HOH HOH . I 5 HOH A 64 1397 64 HOH HOH . I 5 HOH A 65 1398 65 HOH HOH . I 5 HOH A 66 1399 66 HOH HOH . I 5 HOH A 67 1400 67 HOH HOH . I 5 HOH A 68 1401 68 HOH HOH . I 5 HOH A 69 1402 69 HOH HOH . I 5 HOH A 70 1403 70 HOH HOH . I 5 HOH A 71 1404 71 HOH HOH . I 5 HOH A 72 1405 72 HOH HOH . I 5 HOH A 73 1406 73 HOH HOH . I 5 HOH A 74 1407 74 HOH HOH . I 5 HOH A 75 1408 75 HOH HOH . I 5 HOH A 76 1409 76 HOH HOH . I 5 HOH A 77 1410 77 HOH HOH . I 5 HOH A 78 1411 78 HOH HOH . I 5 HOH A 79 1412 79 HOH HOH . I 5 HOH A 80 1413 80 HOH HOH . I 5 HOH A 81 1414 81 HOH HOH . I 5 HOH A 82 1415 82 HOH HOH . I 5 HOH A 83 1416 83 HOH HOH . I 5 HOH A 84 1417 84 HOH HOH . I 5 HOH A 85 1418 85 HOH HOH . I 5 HOH A 86 1419 86 HOH HOH . I 5 HOH A 87 1420 87 HOH HOH . I 5 HOH A 88 1421 88 HOH HOH . I 5 HOH A 89 1422 89 HOH HOH . I 5 HOH A 90 1423 90 HOH HOH . I 5 HOH A 91 1424 91 HOH HOH . I 5 HOH A 92 1425 92 HOH HOH . I 5 HOH A 93 1426 93 HOH HOH . I 5 HOH A 94 1427 94 HOH HOH . I 5 HOH A 95 1428 95 HOH HOH . I 5 HOH A 96 1429 96 HOH HOH . I 5 HOH A 97 1430 97 HOH HOH . I 5 HOH A 98 1431 98 HOH HOH . I 5 HOH A 99 1432 99 HOH HOH . I 5 HOH A 100 1433 100 HOH HOH . I 5 HOH A 101 1434 101 HOH HOH . I 5 HOH A 102 1435 102 HOH HOH . I 5 HOH A 103 1436 103 HOH HOH . I 5 HOH A 104 1437 104 HOH HOH . I 5 HOH A 105 1438 105 HOH HOH . I 5 HOH A 106 1439 106 HOH HOH . I 5 HOH A 107 1440 107 HOH HOH . I 5 HOH A 108 1441 108 HOH HOH . I 5 HOH A 109 1442 109 HOH HOH . I 5 HOH A 110 1443 110 HOH HOH . I 5 HOH A 111 1444 111 HOH HOH . I 5 HOH A 112 1445 112 HOH HOH . I 5 HOH A 113 1446 113 HOH HOH . I 5 HOH A 114 1447 114 HOH HOH . I 5 HOH A 115 1448 115 HOH HOH . I 5 HOH A 116 1449 116 HOH HOH . I 5 HOH A 117 1450 117 HOH HOH . I 5 HOH A 118 1451 118 HOH HOH . I 5 HOH A 119 1452 119 HOH HOH . I 5 HOH A 120 1453 120 HOH HOH . I 5 HOH A 121 1454 121 HOH HOH . I 5 HOH A 122 1455 122 HOH HOH . I 5 HOH A 123 1456 123 HOH HOH . I 5 HOH A 124 1457 124 HOH HOH . I 5 HOH A 125 1458 125 HOH HOH . I 5 HOH A 126 1459 126 HOH HOH . I 5 HOH A 127 1460 127 HOH HOH . I 5 HOH A 128 1461 128 HOH HOH . I 5 HOH A 129 1462 129 HOH HOH . I 5 HOH A 130 1463 130 HOH HOH . I 5 HOH A 131 1464 131 HOH HOH . I 5 HOH A 132 1465 132 HOH HOH . I 5 HOH A 133 1466 133 HOH HOH . I 5 HOH A 134 1467 134 HOH HOH . I 5 HOH A 135 1468 135 HOH HOH . I 5 HOH A 136 1469 136 HOH HOH . I 5 HOH A 137 1470 137 HOH HOH . I 5 HOH A 138 1471 138 HOH HOH . I 5 HOH A 139 1472 139 HOH HOH . I 5 HOH A 140 1473 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 110.618 106.351 124.058 1 58.48 ? C1 NAG 1328 A 1 HETATM 2 C C2 NAG . . . E 3 111.561 106.134 122.866 1 60.52 ? C2 NAG 1328 A 1 HETATM 3 C C3 NAG . . . E 3 113.014 106.538 123.152 1 61.28 ? C3 NAG 1328 A 1 HETATM 4 C C4 NAG . . . E 3 113.135 107.844 123.957 1 62.31 ? C4 NAG 1328 A 1 HETATM 5 C C5 NAG . . . E 3 112.109 107.855 125.099 1 62.81 ? C5 NAG 1328 A 1 HETATM 6 C C6 NAG . . . E 3 112.124 109.16 125.889 1 63.9 ? C6 NAG 1328 A 1 HETATM 7 C C7 NAG . . . E 3 110.951 104.4 121.262 1 59.28 ? C7 NAG 1328 A 1 HETATM 8 C C8 NAG . . . E 3 110.777 102.929 121.033 1 58.46 ? C8 NAG 1328 A 1 HETATM 9 N N2 NAG . . . E 3 111.521 104.749 122.419 1 59.84 ? N2 NAG 1328 A 1 HETATM 10 O O3 NAG . . . E 3 113.658 106.68 121.907 1 60.86 ? O3 NAG 1328 A 1 HETATM 11 O O4 NAG . . . E 3 114.451 108.031 124.455 1 61.56 ? O4 NAG 1328 A 1 HETATM 12 O O5 NAG . . . E 3 110.811 107.662 124.555 1 61.31 ? O5 NAG 1328 A 1 HETATM 13 O O6 NAG . . . E 3 111.49 110.153 125.112 1 65.57 ? O6 NAG 1328 A 1 HETATM 14 O O7 NAG . . . E 3 110.573 105.212 120.411 1 58.64 ? O7 NAG 1328 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #