data_2PNX # _model_server_result.job_id PJHGlEpJQ-DiDL5AAzBD1g _model_server_result.datetime_utc '2024-11-04 23:43:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 2PNX # _exptl.entry_id 2PNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PNX _cell.length_a 68.16 _cell.length_b 68.16 _cell.length_c 27.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ND1 HIS 32 C HIS 223 1_555 G ZN ZN . C ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A SG CYS 8 A CYS 199 1_555 E ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 A SG CYS 10 A CYS 201 1_555 E ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 A SG CYS 21 A CYS 212 1_555 F ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 A SG CYS 26 A CYS 217 1_555 F ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 A SG CYS 35 A CYS 226 1_555 E ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc7 A SG CYS 48 A CYS 239 1_555 F ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc8 A SG CYS 51 A CYS 242 1_555 F ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 C SG CYS 8 C CYS 199 1_555 G ZN ZN . C ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 C SG CYS 10 C CYS 201 1_555 G ZN ZN . C ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 C SG CYS 21 C CYS 212 1_555 H ZN ZN . C ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 C SG CYS 26 C CYS 217 1_555 H ZN ZN . C ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc13 C SG CYS 35 C CYS 226 1_555 G ZN ZN . C ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc14 C SG CYS 48 C CYS 239 1_555 H ZN ZN . C ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc15 C SG CYS 51 C CYS 242 1_555 H ZN ZN . C ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 D C THR 3 D THR 3 1_555 D N M3L 4 D M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 D C M3L 4 D M3L 4 1_555 D N GLN 5 D GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PNX _atom_sites.fract_transf_matrix[1][1] 0.014671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 300 300 ZN ZN2 . F 3 ZN A 1 400 400 ZN ZN2 . G 3 ZN C 1 300 300 ZN ZN2 . H 3 ZN C 1 400 400 ZN ZN2 . I 4 HOH A 1 401 1 HOH HOH . I 4 HOH A 2 402 2 HOH HOH . I 4 HOH A 3 403 3 HOH HOH . I 4 HOH A 4 404 4 HOH HOH . I 4 HOH A 5 405 5 HOH HOH . I 4 HOH A 6 406 7 HOH HOH . I 4 HOH A 7 407 9 HOH HOH . I 4 HOH A 8 408 10 HOH HOH . I 4 HOH A 9 409 11 HOH HOH . I 4 HOH A 10 410 12 HOH HOH . I 4 HOH A 11 411 13 HOH HOH . I 4 HOH A 12 412 15 HOH HOH . I 4 HOH A 13 413 19 HOH HOH . I 4 HOH A 14 414 20 HOH HOH . I 4 HOH A 15 415 21 HOH HOH . I 4 HOH A 16 416 23 HOH HOH . I 4 HOH A 17 417 24 HOH HOH . I 4 HOH A 18 418 26 HOH HOH . I 4 HOH A 19 419 28 HOH HOH . I 4 HOH A 20 420 30 HOH HOH . I 4 HOH A 21 421 31 HOH HOH . I 4 HOH A 22 422 32 HOH HOH . I 4 HOH A 23 423 34 HOH HOH . I 4 HOH A 24 424 36 HOH HOH . I 4 HOH A 25 425 37 HOH HOH . I 4 HOH A 26 426 40 HOH HOH . I 4 HOH A 27 427 44 HOH HOH . I 4 HOH A 28 428 45 HOH HOH . I 4 HOH A 29 429 47 HOH HOH . I 4 HOH A 30 430 50 HOH HOH . I 4 HOH A 31 431 53 HOH HOH . I 4 HOH A 32 432 55 HOH HOH . I 4 HOH A 33 433 56 HOH HOH . I 4 HOH A 34 434 58 HOH HOH . I 4 HOH A 35 435 60 HOH HOH . I 4 HOH A 36 436 61 HOH HOH . I 4 HOH A 37 437 62 HOH HOH . I 4 HOH A 38 438 65 HOH HOH . I 4 HOH A 39 439 66 HOH HOH . I 4 HOH A 40 440 68 HOH HOH . I 4 HOH A 41 441 69 HOH HOH . I 4 HOH A 42 442 71 HOH HOH . I 4 HOH A 43 443 73 HOH HOH . I 4 HOH A 44 444 75 HOH HOH . I 4 HOH A 45 445 76 HOH HOH . I 4 HOH A 46 446 81 HOH HOH . I 4 HOH A 47 447 83 HOH HOH . I 4 HOH A 48 448 84 HOH HOH . I 4 HOH A 49 449 85 HOH HOH . I 4 HOH A 50 450 87 HOH HOH . I 4 HOH A 51 451 88 HOH HOH . I 4 HOH A 52 452 89 HOH HOH . I 4 HOH A 53 453 90 HOH HOH . I 4 HOH A 54 454 91 HOH HOH . I 4 HOH A 55 455 92 HOH HOH . I 4 HOH A 56 456 94 HOH HOH . I 4 HOH A 57 457 95 HOH HOH . I 4 HOH A 58 458 96 HOH HOH . I 4 HOH A 59 459 97 HOH HOH . I 4 HOH A 60 460 98 HOH HOH . I 4 HOH A 61 461 102 HOH HOH . I 4 HOH A 62 462 105 HOH HOH . I 4 HOH A 63 463 106 HOH HOH . I 4 HOH A 64 464 107 HOH HOH . I 4 HOH A 65 465 109 HOH HOH . I 4 HOH A 66 466 110 HOH HOH . I 4 HOH A 67 467 111 HOH HOH . I 4 HOH A 68 468 114 HOH HOH . I 4 HOH A 69 469 115 HOH HOH . I 4 HOH A 70 470 118 HOH HOH . I 4 HOH A 71 471 119 HOH HOH . I 4 HOH A 72 472 123 HOH HOH . I 4 HOH A 73 473 124 HOH HOH . I 4 HOH A 74 474 128 HOH HOH . I 4 HOH A 75 475 129 HOH HOH . I 4 HOH A 76 476 131 HOH HOH . J 4 HOH B 1 13 35 HOH HOH . J 4 HOH B 2 14 79 HOH HOH . J 4 HOH B 3 15 112 HOH HOH . J 4 HOH B 4 16 127 HOH HOH . K 4 HOH C 1 401 16 HOH HOH . K 4 HOH C 2 402 17 HOH HOH . K 4 HOH C 3 403 18 HOH HOH . K 4 HOH C 4 404 22 HOH HOH . K 4 HOH C 5 405 25 HOH HOH . K 4 HOH C 6 406 27 HOH HOH . K 4 HOH C 7 407 29 HOH HOH . K 4 HOH C 8 408 33 HOH HOH . K 4 HOH C 9 409 39 HOH HOH . K 4 HOH C 10 410 41 HOH HOH . K 4 HOH C 11 411 42 HOH HOH . K 4 HOH C 12 412 43 HOH HOH . K 4 HOH C 13 413 46 HOH HOH . K 4 HOH C 14 414 48 HOH HOH . K 4 HOH C 15 415 51 HOH HOH . K 4 HOH C 16 416 52 HOH HOH . K 4 HOH C 17 417 54 HOH HOH . K 4 HOH C 18 418 57 HOH HOH . K 4 HOH C 19 419 59 HOH HOH . K 4 HOH C 20 420 64 HOH HOH . K 4 HOH C 21 421 67 HOH HOH . K 4 HOH C 22 422 70 HOH HOH . K 4 HOH C 23 423 72 HOH HOH . K 4 HOH C 24 424 74 HOH HOH . K 4 HOH C 25 425 77 HOH HOH . K 4 HOH C 26 426 80 HOH HOH . K 4 HOH C 27 427 99 HOH HOH . K 4 HOH C 28 428 100 HOH HOH . K 4 HOH C 29 429 101 HOH HOH . K 4 HOH C 30 430 103 HOH HOH . K 4 HOH C 31 431 104 HOH HOH . K 4 HOH C 32 432 108 HOH HOH . K 4 HOH C 33 433 113 HOH HOH . K 4 HOH C 34 434 116 HOH HOH . K 4 HOH C 35 435 117 HOH HOH . K 4 HOH C 36 436 120 HOH HOH . K 4 HOH C 37 437 122 HOH HOH . K 4 HOH C 38 438 130 HOH HOH . L 4 HOH D 1 13 6 HOH HOH . L 4 HOH D 2 14 8 HOH HOH . L 4 HOH D 3 15 14 HOH HOH . L 4 HOH D 4 16 38 HOH HOH . L 4 HOH D 5 17 49 HOH HOH . L 4 HOH D 6 18 78 HOH HOH . L 4 HOH D 7 19 82 HOH HOH . L 4 HOH D 8 20 86 HOH HOH . L 4 HOH D 9 21 93 HOH HOH . L 4 HOH D 10 22 121 HOH HOH . L 4 HOH D 11 23 125 HOH HOH . L 4 HOH D 12 24 126 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 47.326 _atom_site.Cartn_y 43.634 _atom_site.Cartn_z 13.917 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #