data_2PO2 # _model_server_result.job_id 6p3inJVBRNXbbXVmGHvffQ _model_server_result.datetime_utc '2024-11-07 02:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2po2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":281}' # _entry.id 2PO2 # _exptl.entry_id 2PO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PO2 _cell.length_a 93.498 _cell.length_b 93.498 _cell.length_c 125.714 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -46.749 80.971643 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -93.498 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 278 n n C1 H11 MPD sing 279 n n C1 H12 MPD sing 280 n n C1 H13 MPD sing 281 n n C2 O2 MPD sing 282 n n C2 CM MPD sing 283 n n C2 C3 MPD sing 284 n n O2 HO2 MPD sing 285 n n CM HM1 MPD sing 286 n n CM HM2 MPD sing 287 n n CM HM3 MPD sing 288 n n C3 C4 MPD sing 289 n n C3 H31 MPD sing 290 n n C3 H32 MPD sing 291 n n C4 O4 MPD sing 292 n n C4 C5 MPD sing 293 n n C4 H4 MPD sing 294 n n O4 HO4 MPD sing 295 n n C5 H51 MPD sing 296 n n C5 H52 MPD sing 297 n n C5 H53 MPD sing 298 n n # _atom_sites.entry_id 2PO2 _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0.006175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CDP A 1 250 249 CDP CDP . D 4 MPD A 1 251 250 MPD MPD . E 4 MPD A 1 283 283 MPD MPD . F 4 MPD B 1 280 280 MPD MPD . G 4 MPD B 1 281 281 MPD MPD . H 4 MPD B 1 282 282 MPD MPD . I 5 HOH A 1 284 5 HOH HOH . I 5 HOH A 2 285 7 HOH HOH . I 5 HOH A 3 286 8 HOH HOH . I 5 HOH A 4 287 9 HOH HOH . I 5 HOH A 5 288 10 HOH HOH . I 5 HOH A 6 289 11 HOH HOH . I 5 HOH A 7 290 14 HOH HOH . I 5 HOH A 8 291 17 HOH HOH . I 5 HOH A 9 292 19 HOH HOH . I 5 HOH A 10 293 20 HOH HOH . I 5 HOH A 11 294 22 HOH HOH . I 5 HOH A 12 295 25 HOH HOH . I 5 HOH A 13 296 27 HOH HOH . I 5 HOH A 14 297 29 HOH HOH . I 5 HOH A 15 298 31 HOH HOH . I 5 HOH A 16 299 32 HOH HOH . I 5 HOH A 17 300 33 HOH HOH . I 5 HOH A 18 301 34 HOH HOH . I 5 HOH A 19 302 39 HOH HOH . I 5 HOH A 20 303 40 HOH HOH . I 5 HOH A 21 304 41 HOH HOH . I 5 HOH A 22 305 43 HOH HOH . I 5 HOH A 23 306 45 HOH HOH . I 5 HOH A 24 307 46 HOH HOH . I 5 HOH A 25 308 47 HOH HOH . I 5 HOH A 26 309 51 HOH HOH . I 5 HOH A 27 310 53 HOH HOH . I 5 HOH A 28 311 54 HOH HOH . I 5 HOH A 29 312 58 HOH HOH . I 5 HOH A 30 313 64 HOH HOH . I 5 HOH A 31 314 65 HOH HOH . I 5 HOH A 32 315 67 HOH HOH . I 5 HOH A 33 316 68 HOH HOH . I 5 HOH A 34 317 71 HOH HOH . I 5 HOH A 35 318 72 HOH HOH . I 5 HOH A 36 319 74 HOH HOH . I 5 HOH A 37 320 77 HOH HOH . I 5 HOH A 38 321 78 HOH HOH . I 5 HOH A 39 322 80 HOH HOH . I 5 HOH A 40 323 81 HOH HOH . I 5 HOH A 41 324 82 HOH HOH . I 5 HOH A 42 325 83 HOH HOH . I 5 HOH A 43 326 85 HOH HOH . I 5 HOH A 44 327 88 HOH HOH . I 5 HOH A 45 328 92 HOH HOH . I 5 HOH A 46 329 93 HOH HOH . I 5 HOH A 47 330 95 HOH HOH . I 5 HOH A 48 331 98 HOH HOH . I 5 HOH A 49 332 99 HOH HOH . I 5 HOH A 50 333 103 HOH HOH . I 5 HOH A 51 334 118 HOH HOH . I 5 HOH A 52 335 119 HOH HOH . I 5 HOH A 53 336 120 HOH HOH . I 5 HOH A 54 337 122 HOH HOH . I 5 HOH A 55 338 125 HOH HOH . I 5 HOH A 56 339 126 HOH HOH . I 5 HOH A 57 340 127 HOH HOH . I 5 HOH A 58 341 133 HOH HOH . I 5 HOH A 59 342 137 HOH HOH . I 5 HOH A 60 343 138 HOH HOH . I 5 HOH A 61 344 141 HOH HOH . I 5 HOH A 62 345 144 HOH HOH . I 5 HOH A 63 346 145 HOH HOH . I 5 HOH A 64 347 147 HOH HOH . I 5 HOH A 65 348 148 HOH HOH . I 5 HOH A 66 349 150 HOH HOH . I 5 HOH A 67 350 152 HOH HOH . I 5 HOH A 68 351 155 HOH HOH . I 5 HOH A 69 352 156 HOH HOH . I 5 HOH A 70 353 164 HOH HOH . I 5 HOH A 71 354 165 HOH HOH . I 5 HOH A 72 355 166 HOH HOH . I 5 HOH A 73 356 167 HOH HOH . I 5 HOH A 74 357 171 HOH HOH . I 5 HOH A 75 358 174 HOH HOH . I 5 HOH A 76 359 176 HOH HOH . J 5 HOH B 1 283 1 HOH HOH . J 5 HOH B 2 284 2 HOH HOH . J 5 HOH B 3 285 3 HOH HOH . J 5 HOH B 4 286 4 HOH HOH . J 5 HOH B 5 287 6 HOH HOH . J 5 HOH B 6 288 12 HOH HOH . J 5 HOH B 7 289 13 HOH HOH . J 5 HOH B 8 290 15 HOH HOH . J 5 HOH B 9 291 16 HOH HOH . J 5 HOH B 10 292 18 HOH HOH . J 5 HOH B 11 293 21 HOH HOH . J 5 HOH B 12 294 23 HOH HOH . J 5 HOH B 13 295 24 HOH HOH . J 5 HOH B 14 296 26 HOH HOH . J 5 HOH B 15 297 28 HOH HOH . J 5 HOH B 16 298 30 HOH HOH . J 5 HOH B 17 299 35 HOH HOH . J 5 HOH B 18 300 36 HOH HOH . J 5 HOH B 19 301 37 HOH HOH . J 5 HOH B 20 302 38 HOH HOH . J 5 HOH B 21 303 42 HOH HOH . J 5 HOH B 22 304 44 HOH HOH . J 5 HOH B 23 305 48 HOH HOH . J 5 HOH B 24 306 49 HOH HOH . J 5 HOH B 25 307 50 HOH HOH . J 5 HOH B 26 308 52 HOH HOH . J 5 HOH B 27 309 55 HOH HOH . J 5 HOH B 28 310 56 HOH HOH . J 5 HOH B 29 311 57 HOH HOH . J 5 HOH B 30 312 59 HOH HOH . J 5 HOH B 31 313 60 HOH HOH . J 5 HOH B 32 314 61 HOH HOH . J 5 HOH B 33 315 62 HOH HOH . J 5 HOH B 34 316 63 HOH HOH . J 5 HOH B 35 317 66 HOH HOH . J 5 HOH B 36 318 69 HOH HOH . J 5 HOH B 37 319 70 HOH HOH . J 5 HOH B 38 320 73 HOH HOH . J 5 HOH B 39 321 75 HOH HOH . J 5 HOH B 40 322 76 HOH HOH . J 5 HOH B 41 323 79 HOH HOH . J 5 HOH B 42 324 84 HOH HOH . J 5 HOH B 43 325 86 HOH HOH . J 5 HOH B 44 326 87 HOH HOH . J 5 HOH B 45 327 89 HOH HOH . J 5 HOH B 46 328 90 HOH HOH . J 5 HOH B 47 329 91 HOH HOH . J 5 HOH B 48 330 94 HOH HOH . J 5 HOH B 49 331 96 HOH HOH . J 5 HOH B 50 332 97 HOH HOH . J 5 HOH B 51 333 100 HOH HOH . J 5 HOH B 52 334 101 HOH HOH . J 5 HOH B 53 335 102 HOH HOH . J 5 HOH B 54 336 104 HOH HOH . J 5 HOH B 55 337 105 HOH HOH . J 5 HOH B 56 338 106 HOH HOH . J 5 HOH B 57 339 107 HOH HOH . J 5 HOH B 58 340 108 HOH HOH . J 5 HOH B 59 341 109 HOH HOH . J 5 HOH B 60 342 110 HOH HOH . J 5 HOH B 61 343 111 HOH HOH . J 5 HOH B 62 344 112 HOH HOH . J 5 HOH B 63 345 113 HOH HOH . J 5 HOH B 64 346 114 HOH HOH . J 5 HOH B 65 347 115 HOH HOH . J 5 HOH B 66 348 116 HOH HOH . J 5 HOH B 67 349 117 HOH HOH . J 5 HOH B 68 350 121 HOH HOH . J 5 HOH B 69 351 123 HOH HOH . J 5 HOH B 70 352 124 HOH HOH . J 5 HOH B 71 353 128 HOH HOH . J 5 HOH B 72 354 129 HOH HOH . J 5 HOH B 73 355 130 HOH HOH . J 5 HOH B 74 356 131 HOH HOH . J 5 HOH B 75 357 132 HOH HOH . J 5 HOH B 76 358 134 HOH HOH . J 5 HOH B 77 359 135 HOH HOH . J 5 HOH B 78 360 136 HOH HOH . J 5 HOH B 79 361 139 HOH HOH . J 5 HOH B 80 362 140 HOH HOH . J 5 HOH B 81 363 142 HOH HOH . J 5 HOH B 82 364 143 HOH HOH . J 5 HOH B 83 365 146 HOH HOH . J 5 HOH B 84 366 149 HOH HOH . J 5 HOH B 85 367 151 HOH HOH . J 5 HOH B 86 368 153 HOH HOH . J 5 HOH B 87 369 154 HOH HOH . J 5 HOH B 88 370 157 HOH HOH . J 5 HOH B 89 371 158 HOH HOH . J 5 HOH B 90 372 159 HOH HOH . J 5 HOH B 91 373 160 HOH HOH . J 5 HOH B 92 374 161 HOH HOH . J 5 HOH B 93 375 162 HOH HOH . J 5 HOH B 94 376 163 HOH HOH . J 5 HOH B 95 377 168 HOH HOH . J 5 HOH B 96 378 169 HOH HOH . J 5 HOH B 97 379 170 HOH HOH . J 5 HOH B 98 380 172 HOH HOH . J 5 HOH B 99 381 173 HOH HOH . J 5 HOH B 100 382 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 4 -76.869 -8.943 -31.525 1 58.88 ? C1 MPD 281 B 1 HETATM 2 C C2 MPD . . . G 4 -77.678 -10.075 -32.177 1 65.01 ? C2 MPD 281 B 1 HETATM 3 O O2 MPD . . . G 4 -78.914 -10.376 -31.457 1 64.47 ? O2 MPD 281 B 1 HETATM 4 C CM MPD . . . G 4 -78.12 -9.682 -33.601 1 64.73 ? CM MPD 281 B 1 HETATM 5 C C3 MPD . . . G 4 -76.778 -11.317 -32.127 1 66.27 ? C3 MPD 281 B 1 HETATM 6 C C4 MPD . . . G 4 -77.244 -12.434 -33.05 1 68.14 ? C4 MPD 281 B 1 HETATM 7 O O4 MPD . . . G 4 -76.819 -12.089 -34.357 1 66.6 ? O4 MPD 281 B 1 HETATM 8 C C5 MPD . . . G 4 -76.65 -13.769 -32.604 1 68.73 ? C5 MPD 281 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #