data_2POT # _model_server_result.job_id '_mE8Ae0ktvdtL-G7U3JT4A' _model_server_result.datetime_utc '2024-10-18 15:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 2POT # _exptl.entry_id 2POT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.126 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.87 _cell.angle_gamma 90 _cell.entry_id 2POT _cell.length_a 89.144 _cell.length_b 63.692 _cell.length_c 71.101 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2POT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'C5 H5 N5 O' _chem_comp.formula_weight 151.126 _chem_comp.id GUN _chem_comp.mon_nstd_flag . _chem_comp.name GUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 GUN sing 142 n y N9 C4 GUN sing 143 n y N9 HN9 GUN sing 144 n n C8 N7 GUN doub 145 n y C8 H8 GUN sing 146 n n N7 C5 GUN sing 147 n y C5 C6 GUN sing 148 n n C5 C4 GUN doub 149 n y C6 O6 GUN doub 150 n n C6 N1 GUN sing 151 n n N1 C2 GUN sing 152 n n N1 HN1 GUN sing 153 n n C2 N2 GUN sing 154 n n C2 N3 GUN doub 155 n n N2 HN21 GUN sing 156 n n N2 HN22 GUN sing 157 n n N3 C4 GUN sing 158 n n # _atom_sites.entry_id 2POT _atom_sites.fract_transf_matrix[1][1] 0.011218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000562 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 500 500 ZN ZN . C 3 GUN A 1 600 600 GUN GUN . D 4 GOL A 1 702 702 GOL GOL . E 4 GOL A 1 703 703 GOL GOL . F 4 GOL A 1 700 700 GOL GOL . G 4 GOL A 1 701 701 GOL GOL . H 4 GOL A 1 705 705 GOL GOL . I 4 GOL A 1 706 706 GOL GOL . J 4 GOL A 1 717 717 GOL GOL . K 5 HOH A 1 718 1001 HOH HOH . K 5 HOH A 2 719 1002 HOH HOH . K 5 HOH A 3 720 1003 HOH HOH . K 5 HOH A 4 721 1004 HOH HOH . K 5 HOH A 5 722 1005 HOH HOH . K 5 HOH A 6 723 1006 HOH HOH . K 5 HOH A 7 724 1007 HOH HOH . K 5 HOH A 8 725 1008 HOH HOH . K 5 HOH A 9 726 1009 HOH HOH . K 5 HOH A 10 727 1010 HOH HOH . K 5 HOH A 11 728 1011 HOH HOH . K 5 HOH A 12 729 1012 HOH HOH . K 5 HOH A 13 730 1013 HOH HOH . K 5 HOH A 14 731 1014 HOH HOH . K 5 HOH A 15 732 1015 HOH HOH . K 5 HOH A 16 733 1016 HOH HOH . K 5 HOH A 17 734 1017 HOH HOH . K 5 HOH A 18 735 1018 HOH HOH . K 5 HOH A 19 736 1019 HOH HOH . K 5 HOH A 20 737 1020 HOH HOH . K 5 HOH A 21 738 1021 HOH HOH . K 5 HOH A 22 739 1022 HOH HOH . K 5 HOH A 23 740 1023 HOH HOH . K 5 HOH A 24 741 1024 HOH HOH . K 5 HOH A 25 742 1025 HOH HOH . K 5 HOH A 26 743 1026 HOH HOH . K 5 HOH A 27 744 1027 HOH HOH . K 5 HOH A 28 745 1028 HOH HOH . K 5 HOH A 29 746 1029 HOH HOH . K 5 HOH A 30 747 1030 HOH HOH . K 5 HOH A 31 748 1031 HOH HOH . K 5 HOH A 32 749 1032 HOH HOH . K 5 HOH A 33 750 1033 HOH HOH . K 5 HOH A 34 751 1034 HOH HOH . K 5 HOH A 35 752 1035 HOH HOH . K 5 HOH A 36 753 1036 HOH HOH . K 5 HOH A 37 754 1037 HOH HOH . K 5 HOH A 38 755 1038 HOH HOH . K 5 HOH A 39 756 1039 HOH HOH . K 5 HOH A 40 757 1040 HOH HOH . K 5 HOH A 41 758 1041 HOH HOH . K 5 HOH A 42 759 1042 HOH HOH . K 5 HOH A 43 760 1043 HOH HOH . K 5 HOH A 44 761 1044 HOH HOH . K 5 HOH A 45 762 1045 HOH HOH . K 5 HOH A 46 763 1046 HOH HOH . K 5 HOH A 47 764 1047 HOH HOH . K 5 HOH A 48 765 1048 HOH HOH . K 5 HOH A 49 766 1049 HOH HOH . K 5 HOH A 50 767 1050 HOH HOH . K 5 HOH A 51 768 1051 HOH HOH . K 5 HOH A 52 769 1052 HOH HOH . K 5 HOH A 53 770 1053 HOH HOH . K 5 HOH A 54 771 1054 HOH HOH . K 5 HOH A 55 772 1055 HOH HOH . K 5 HOH A 56 773 1056 HOH HOH . K 5 HOH A 57 774 1057 HOH HOH . K 5 HOH A 58 775 1058 HOH HOH . K 5 HOH A 59 776 1059 HOH HOH . K 5 HOH A 60 777 1060 HOH HOH . K 5 HOH A 61 778 1061 HOH HOH . K 5 HOH A 62 779 1062 HOH HOH . K 5 HOH A 63 780 1063 HOH HOH . K 5 HOH A 64 781 1064 HOH HOH . K 5 HOH A 65 782 1065 HOH HOH . K 5 HOH A 66 783 1066 HOH HOH . K 5 HOH A 67 784 1067 HOH HOH . K 5 HOH A 68 785 1068 HOH HOH . K 5 HOH A 69 786 1069 HOH HOH . K 5 HOH A 70 787 1070 HOH HOH . K 5 HOH A 71 788 1071 HOH HOH . K 5 HOH A 72 789 1072 HOH HOH . K 5 HOH A 73 790 1073 HOH HOH . K 5 HOH A 74 791 1074 HOH HOH . K 5 HOH A 75 792 1075 HOH HOH . K 5 HOH A 76 793 1076 HOH HOH . K 5 HOH A 77 794 1077 HOH HOH . K 5 HOH A 78 795 1078 HOH HOH . K 5 HOH A 79 796 1079 HOH HOH . K 5 HOH A 80 797 1080 HOH HOH . K 5 HOH A 81 798 1081 HOH HOH . K 5 HOH A 82 799 1082 HOH HOH . K 5 HOH A 83 800 1083 HOH HOH . K 5 HOH A 84 801 1084 HOH HOH . K 5 HOH A 85 802 1085 HOH HOH . K 5 HOH A 86 803 1086 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 GUN . . . C 3 15.943 16.955 19.974 0.85 54.62 ? N9 GUN 600 A 1 HETATM 2 C C8 GUN . . . C 3 17.124 17.312 19.548 0.85 56.09 ? C8 GUN 600 A 1 HETATM 3 N N7 GUN . . . C 3 17.863 17.639 20.519 0.85 49.12 ? N7 GUN 600 A 1 HETATM 4 C C5 GUN . . . C 3 17.12 17.494 21.741 0.85 52.33 ? C5 GUN 600 A 1 HETATM 5 C C6 GUN . . . C 3 17.289 17.672 23.181 0.85 51.54 ? C6 GUN 600 A 1 HETATM 6 O O6 GUN . . . C 3 18.364 18.06 23.599 0.85 44.59 ? O6 GUN 600 A 1 HETATM 7 N N1 GUN . . . C 3 16.267 17.399 23.961 0.85 53.18 ? N1 GUN 600 A 1 HETATM 8 C C2 GUN . . . C 3 15.105 16.977 23.491 0.85 56.85 ? C2 GUN 600 A 1 HETATM 9 N N2 GUN . . . C 3 14.134 16.727 24.332 0.85 54.01 ? N2 GUN 600 A 1 HETATM 10 N N3 GUN . . . C 3 14.912 16.808 22.238 0.85 59.4 ? N3 GUN 600 A 1 HETATM 11 C C4 GUN . . . C 3 15.95 17.07 21.279 0.85 56.29 ? C4 GUN 600 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #