data_2PPS
#
_model_server_result.job_id            EORFt8igItL9oCA8kGMWkA 
_model_server_result.datetime_utc      '2024-11-21 14:24:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pps 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"YA","auth_seq_id":2007}' 
#
_entry.id    2PPS 
#
_exptl.entry_id    2PPS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.696 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYLLOQUINONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2PPS 
_cell.length_a            286 
_cell.length_b            286 
_cell.length_c            167 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PPS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             YA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H46 O2' 
_chem_comp.formula_weight    450.696 
_chem_comp.id                PQN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYLLOQUINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN K1;2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PQN doub 146 n n 
C1 C2 PQN sing 147 n n 
C1 C10 PQN sing 148 n n 
C2 C2M PQN sing 149 n n 
C2 C3 PQN doub 150 n n 
C2M H2M1 PQN sing 151 n n 
C2M H2M2 PQN sing 152 n n 
C2M H2M3 PQN sing 153 n n 
C3 C4 PQN sing 154 n n 
C3 C11 PQN sing 155 n n 
C4 O4 PQN doub 156 n n 
C4 C5 PQN sing 157 n n 
C5 C6 PQN doub 158 n y 
C5 C10 PQN sing 159 n y 
C6 C7 PQN sing 160 n y 
C6 H6 PQN sing 161 n n 
C7 C8 PQN doub 162 n y 
C7 H7 PQN sing 163 n n 
C8 C9 PQN sing 164 n y 
C8 H8 PQN sing 165 n n 
C9 C10 PQN doub 166 n y 
C9 H9 PQN sing 167 n n 
C11 C12 PQN sing 168 n n 
C11 H111 PQN sing 169 n n 
C11 H112 PQN sing 170 n n 
C12 C13 PQN doub 171 e n 
C12 H12 PQN sing 172 n n 
C13 C14 PQN sing 173 n n 
C13 C15 PQN sing 174 n n 
C14 H141 PQN sing 175 n n 
C14 H142 PQN sing 176 n n 
C14 H143 PQN sing 177 n n 
C15 C16 PQN sing 178 n n 
C15 H151 PQN sing 179 n n 
C15 H152 PQN sing 180 n n 
C16 C17 PQN sing 181 n n 
C16 H161 PQN sing 182 n n 
C16 H162 PQN sing 183 n n 
C17 C18 PQN sing 184 n n 
C17 H171 PQN sing 185 n n 
C17 H172 PQN sing 186 n n 
C18 C19 PQN sing 187 n n 
C18 C20 PQN sing 188 n n 
C18 H18 PQN sing 189 n n 
C19 H191 PQN sing 190 n n 
C19 H192 PQN sing 191 n n 
C19 H193 PQN sing 192 n n 
C20 C21 PQN sing 193 n n 
C20 H201 PQN sing 194 n n 
C20 H202 PQN sing 195 n n 
C21 C22 PQN sing 196 n n 
C21 H211 PQN sing 197 n n 
C21 H212 PQN sing 198 n n 
C22 C23 PQN sing 199 n n 
C22 H221 PQN sing 200 n n 
C22 H222 PQN sing 201 n n 
C23 C24 PQN sing 202 n n 
C23 C25 PQN sing 203 n n 
C23 H23 PQN sing 204 n n 
C24 H241 PQN sing 205 n n 
C24 H242 PQN sing 206 n n 
C24 H243 PQN sing 207 n n 
C25 C26 PQN sing 208 n n 
C25 H251 PQN sing 209 n n 
C25 H252 PQN sing 210 n n 
C26 C27 PQN sing 211 n n 
C26 H261 PQN sing 212 n n 
C26 H262 PQN sing 213 n n 
C27 C28 PQN sing 214 n n 
C27 H271 PQN sing 215 n n 
C27 H272 PQN sing 216 n n 
C28 C29 PQN sing 217 n n 
C28 C30 PQN sing 218 n n 
C28 H28 PQN sing 219 n n 
C29 H291 PQN sing 220 n n 
C29 H292 PQN sing 221 n n 
C29 H293 PQN sing 222 n n 
C30 H301 PQN sing 223 n n 
C30 H302 PQN sing 224 n n 
C30 H303 PQN sing 225 n n 
#
_atom_sites.entry_id                     2PPS 
_atom_sites.fract_transf_matrix[1][1]    0.003497 
_atom_sites.fract_transf_matrix[1][2]    0.002019 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004037 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 CLA A 1 2001 2001 CLA CLA . 
H 7 CLA A 1 2006 2006 CLA CLA . 
I 7 CLA A 1 2502 2502 CLA CLA . 
J 7 CLA A 1 3005 3005 CLA CLA . 
K 7 CLA A 1 3007 3007 CLA CLA . 
L 7 CLA A 1 3009 3009 CLA CLA . 
M 7 CLA A 1 3013 3013 CLA CLA . 
N 7 CLA A 1 3014 3014 CLA CLA . 
O 7 CLA A 1 3016 3016 CLA CLA . 
P 7 CLA A 1 3017 3017 CLA CLA . 
Q 7 CLA A 1 3018 3018 CLA CLA . 
R 7 CLA A 1 3021 3021 CLA CLA . 
S 7 CLA A 1 3024 3024 CLA CLA . 
T 7 CLA A 1 3026 3026 CLA CLA . 
U 7 CLA A 1 3027 3027 CLA CLA . 
V 7 CLA A 1 3029 3029 CLA CLA . 
W 7 CLA A 1 3030 3030 CLA CLA . 
X 7 CLA A 1 3032 3032 CLA CLA . 
Y 7 CLA A 1 3039 3039 CLA CLA . 
Z 7 CLA A 1 3040 3040 CLA CLA . 
AA 7 CLA A 1 3041 3041 CLA CLA . 
BA 7 CLA A 1 3043 3043 CLA CLA . 
CA 7 CLA A 1 3045 3045 CLA CLA . 
DA 7 CLA A 1 3047 3047 CLA CLA . 
EA 7 CLA A 1 3048 3048 CLA CLA . 
FA 7 CLA A 1 3052 3052 CLA CLA . 
GA 7 CLA A 1 3053 3053 CLA CLA . 
HA 7 CLA A 1 3056 3056 CLA CLA . 
IA 7 CLA A 1 3057 3057 CLA CLA . 
JA 7 CLA A 1 3058 3058 CLA CLA . 
KA 7 CLA A 1 3062 3062 CLA CLA . 
LA 7 CLA A 1 3065 3065 CLA CLA . 
MA 7 CLA A 1 3067 3067 CLA CLA . 
NA 7 CLA A 1 3068 3068 CLA CLA . 
OA 7 CLA A 1 3071 3071 CLA CLA . 
PA 7 CLA A 1 3072 3072 CLA CLA . 
QA 7 CLA A 1 3073 3073 CLA CLA . 
RA 7 CLA A 1 3077 3077 CLA CLA . 
SA 7 CLA A 1 3078 3078 CLA CLA . 
TA 7 CLA A 1 3079 3079 CLA CLA . 
UA 7 CLA B 1 2002 2002 CLA CLA . 
VA 7 CLA B 1 2003 2003 CLA CLA . 
WA 7 CLA B 1 2004 2004 CLA CLA . 
XA 7 CLA B 1 2005 2005 CLA CLA . 
YA 8 PQN B 1 2007 2007 PQN PQN . 
ZA 9 SF4 B 1 2008 2008 SF4 FS4 . 
AB 7 CLA B 1 2501 2501 CLA CLA . 
BB 7 CLA B 1 3001 3001 CLA CLA . 
CB 7 CLA B 1 3003 3003 CLA CLA . 
DB 7 CLA B 1 3006 3006 CLA CLA . 
EB 7 CLA B 1 3008 3008 CLA CLA . 
FB 7 CLA B 1 3010 3010 CLA CLA . 
GB 7 CLA B 1 3011 3011 CLA CLA . 
HB 7 CLA B 1 3015 3015 CLA CLA . 
IB 7 CLA B 1 3019 3019 CLA CLA . 
JB 7 CLA B 1 3020 3020 CLA CLA . 
KB 7 CLA B 1 3023 3023 CLA CLA . 
LB 7 CLA B 1 3025 3025 CLA CLA . 
MB 7 CLA B 1 3028 3028 CLA CLA . 
NB 7 CLA B 1 3034 3034 CLA CLA . 
OB 7 CLA B 1 3035 3035 CLA CLA . 
PB 7 CLA B 1 3037 3037 CLA CLA . 
QB 7 CLA B 1 3042 3042 CLA CLA . 
RB 7 CLA B 1 3044 3044 CLA CLA . 
SB 7 CLA B 1 3046 3046 CLA CLA . 
TB 7 CLA B 1 3055 3055 CLA CLA . 
UB 7 CLA B 1 3060 3060 CLA CLA . 
VB 7 CLA B 1 3063 3063 CLA CLA . 
WB 7 CLA B 1 3066 3066 CLA CLA . 
XB 7 CLA B 1 3069 3069 CLA CLA . 
YB 7 CLA B 1 3070 3070 CLA CLA . 
ZB 7 CLA B 1 3074 3074 CLA CLA . 
AC 7 CLA B 1 3075 3075 CLA CLA . 
BC 7 CLA B 1 3076 3076 CLA CLA . 
CC 7 CLA B 1 3080 3080 CLA CLA . 
DC 7 CLA B 1 3081 3081 CLA CLA . 
EC 7 CLA L 1 3036 3036 CLA CLA . 
FC 7 CLA L 1 3038 3038 CLA CLA . 
GC 7 CLA L 1 3049 3049 CLA CLA . 
HC 7 CLA L 1 3064 3064 CLA CLA . 
IC 7 CLA K 1 3050 3050 CLA CLA . 
JC 7 CLA K 1 3051 3051 CLA CLA . 
KC 7 CLA F 1 3002 3002 CLA CLA . 
LC 7 CLA F 1 3004 3004 CLA CLA . 
MC 7 CLA F 1 3012 3012 CLA CLA . 
NC 7 CLA F 1 3022 3022 CLA CLA . 
OC 7 CLA F 1 3031 3031 CLA CLA . 
PC 7 CLA F 1 3033 3033 CLA CLA . 
QC 7 CLA F 1 3054 3054 CLA CLA . 
RC 7 CLA F 1 3059 3059 CLA CLA . 
SC 7 CLA F 1 3061 3061 CLA CLA . 
TC 9 SF4 C 1 2009 2009 SF4 FS4 . 
UC 9 SF4 C 1 2010 2010 SF4 FS4 . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           C 
_atom_site.label_atom_id         C10 
_atom_site.label_comp_id         PQN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         YA 
_atom_site.label_entity_id       8 
_atom_site.Cartn_x               112.235 
_atom_site.Cartn_y               116.148 
_atom_site.Cartn_z               66.316 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          C10 
_atom_site.auth_comp_id          PQN 
_atom_site.auth_seq_id           2007 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           4 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#