data_2PPS # _model_server_result.job_id zChpybWjYNsOtvQZzNZ7jg _model_server_result.datetime_utc '2024-11-21 14:10:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ZA","auth_seq_id":2008}' # _entry.id 2PPS # _exptl.entry_id 2PPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PPS _cell.length_a 286 _cell.length_b 286 _cell.length_c 167 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 ZA N N ? 9 TC N N ? 9 UC N N # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 226 n n FE1 S3 SF4 sing 227 n n FE1 S4 SF4 sing 228 n n FE2 S1 SF4 sing 229 n n FE2 S3 SF4 sing 230 n n FE2 S4 SF4 sing 231 n n FE3 S1 SF4 sing 232 n n FE3 S2 SF4 sing 233 n n FE3 S4 SF4 sing 234 n n FE4 S1 SF4 sing 235 n n FE4 S2 SF4 sing 236 n n FE4 S3 SF4 sing 237 n n # _atom_sites.entry_id 2PPS _atom_sites.fract_transf_matrix[1][1] 0.003497 _atom_sites.fract_transf_matrix[1][2] 0.002019 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 CLA A 1 2001 2001 CLA CLA . H 7 CLA A 1 2006 2006 CLA CLA . I 7 CLA A 1 2502 2502 CLA CLA . J 7 CLA A 1 3005 3005 CLA CLA . K 7 CLA A 1 3007 3007 CLA CLA . L 7 CLA A 1 3009 3009 CLA CLA . M 7 CLA A 1 3013 3013 CLA CLA . N 7 CLA A 1 3014 3014 CLA CLA . O 7 CLA A 1 3016 3016 CLA CLA . P 7 CLA A 1 3017 3017 CLA CLA . Q 7 CLA A 1 3018 3018 CLA CLA . R 7 CLA A 1 3021 3021 CLA CLA . S 7 CLA A 1 3024 3024 CLA CLA . T 7 CLA A 1 3026 3026 CLA CLA . U 7 CLA A 1 3027 3027 CLA CLA . V 7 CLA A 1 3029 3029 CLA CLA . W 7 CLA A 1 3030 3030 CLA CLA . X 7 CLA A 1 3032 3032 CLA CLA . Y 7 CLA A 1 3039 3039 CLA CLA . Z 7 CLA A 1 3040 3040 CLA CLA . AA 7 CLA A 1 3041 3041 CLA CLA . BA 7 CLA A 1 3043 3043 CLA CLA . CA 7 CLA A 1 3045 3045 CLA CLA . DA 7 CLA A 1 3047 3047 CLA CLA . EA 7 CLA A 1 3048 3048 CLA CLA . FA 7 CLA A 1 3052 3052 CLA CLA . GA 7 CLA A 1 3053 3053 CLA CLA . HA 7 CLA A 1 3056 3056 CLA CLA . IA 7 CLA A 1 3057 3057 CLA CLA . JA 7 CLA A 1 3058 3058 CLA CLA . KA 7 CLA A 1 3062 3062 CLA CLA . LA 7 CLA A 1 3065 3065 CLA CLA . MA 7 CLA A 1 3067 3067 CLA CLA . NA 7 CLA A 1 3068 3068 CLA CLA . OA 7 CLA A 1 3071 3071 CLA CLA . PA 7 CLA A 1 3072 3072 CLA CLA . QA 7 CLA A 1 3073 3073 CLA CLA . RA 7 CLA A 1 3077 3077 CLA CLA . SA 7 CLA A 1 3078 3078 CLA CLA . TA 7 CLA A 1 3079 3079 CLA CLA . UA 7 CLA B 1 2002 2002 CLA CLA . VA 7 CLA B 1 2003 2003 CLA CLA . WA 7 CLA B 1 2004 2004 CLA CLA . XA 7 CLA B 1 2005 2005 CLA CLA . YA 8 PQN B 1 2007 2007 PQN PQN . ZA 9 SF4 B 1 2008 2008 SF4 FS4 . AB 7 CLA B 1 2501 2501 CLA CLA . BB 7 CLA B 1 3001 3001 CLA CLA . CB 7 CLA B 1 3003 3003 CLA CLA . DB 7 CLA B 1 3006 3006 CLA CLA . EB 7 CLA B 1 3008 3008 CLA CLA . FB 7 CLA B 1 3010 3010 CLA CLA . GB 7 CLA B 1 3011 3011 CLA CLA . HB 7 CLA B 1 3015 3015 CLA CLA . IB 7 CLA B 1 3019 3019 CLA CLA . JB 7 CLA B 1 3020 3020 CLA CLA . KB 7 CLA B 1 3023 3023 CLA CLA . LB 7 CLA B 1 3025 3025 CLA CLA . MB 7 CLA B 1 3028 3028 CLA CLA . NB 7 CLA B 1 3034 3034 CLA CLA . OB 7 CLA B 1 3035 3035 CLA CLA . PB 7 CLA B 1 3037 3037 CLA CLA . QB 7 CLA B 1 3042 3042 CLA CLA . RB 7 CLA B 1 3044 3044 CLA CLA . SB 7 CLA B 1 3046 3046 CLA CLA . TB 7 CLA B 1 3055 3055 CLA CLA . UB 7 CLA B 1 3060 3060 CLA CLA . VB 7 CLA B 1 3063 3063 CLA CLA . WB 7 CLA B 1 3066 3066 CLA CLA . XB 7 CLA B 1 3069 3069 CLA CLA . YB 7 CLA B 1 3070 3070 CLA CLA . ZB 7 CLA B 1 3074 3074 CLA CLA . AC 7 CLA B 1 3075 3075 CLA CLA . BC 7 CLA B 1 3076 3076 CLA CLA . CC 7 CLA B 1 3080 3080 CLA CLA . DC 7 CLA B 1 3081 3081 CLA CLA . EC 7 CLA L 1 3036 3036 CLA CLA . FC 7 CLA L 1 3038 3038 CLA CLA . GC 7 CLA L 1 3049 3049 CLA CLA . HC 7 CLA L 1 3064 3064 CLA CLA . IC 7 CLA K 1 3050 3050 CLA CLA . JC 7 CLA K 1 3051 3051 CLA CLA . KC 7 CLA F 1 3002 3002 CLA CLA . LC 7 CLA F 1 3004 3004 CLA CLA . MC 7 CLA F 1 3012 3012 CLA CLA . NC 7 CLA F 1 3022 3022 CLA CLA . OC 7 CLA F 1 3031 3031 CLA CLA . PC 7 CLA F 1 3033 3033 CLA CLA . QC 7 CLA F 1 3054 3054 CLA CLA . RC 7 CLA F 1 3059 3059 CLA CLA . SC 7 CLA F 1 3061 3061 CLA CLA . TC 9 SF4 C 1 2009 2009 SF4 FS4 . UC 9 SF4 C 1 2010 2010 SF4 FS4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . ZA 9 103.696 119.204 56.287 1 20 ? FE1 SF4 2008 B 1 HETATM 2 FE FE2 SF4 . . . ZA 9 102.87 121.126 58.192 1 20 ? FE2 SF4 2008 B 1 HETATM 3 FE FE3 SF4 . . . ZA 9 101.207 120.278 56.26 1 20 ? FE3 SF4 2008 B 1 HETATM 4 FE FE4 SF4 . . . ZA 9 102.04 118.542 58.256 1 20 ? FE4 SF4 2008 B 1 HETATM 5 S S1 SF4 . . . ZA 9 100.782 120.41 58.593 1 20 ? S1 SF4 2008 B 1 HETATM 6 S S2 SF4 . . . ZA 9 101.733 118.256 56.127 1 20 ? S2 SF4 2008 B 1 HETATM 7 S S3 SF4 . . . ZA 9 104.057 119.122 58.546 1 20 ? S3 SF4 2008 B 1 HETATM 8 S S4 SF4 . . . ZA 9 103.062 121.505 56.04 1 20 ? S4 SF4 2008 B 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #