data_2PPS
#
_model_server_result.job_id            Jjosu2oU8XAiRmBLm4-mkg 
_model_server_result.datetime_utc      '2024-11-23 10:00:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pps 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RC","auth_seq_id":3059}' 
#
_entry.id    2PPS 
#
_exptl.entry_id    2PPS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              893.489 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHLOROPHYLL A' 
_entity.pdbx_number_of_molecules    89 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2PPS 
_cell.length_a            286 
_cell.length_b            286 
_cell.length_c            167 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PPS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
? 7 S N N 
? 7 T N N 
? 7 U N N 
? 7 V N N 
? 7 W N N 
? 7 X N N 
? 7 Y N N 
? 7 Z N N 
? 7 AA N N 
? 7 BA N N 
? 7 CA N N 
? 7 DA N N 
? 7 EA N N 
? 7 FA N N 
? 7 GA N N 
? 7 HA N N 
? 7 IA N N 
? 7 JA N N 
? 7 KA N N 
? 7 LA N N 
? 7 MA N N 
? 7 NA N N 
? 7 OA N N 
? 7 PA N N 
? 7 QA N N 
? 7 RA N N 
? 7 SA N N 
? 7 TA N N 
? 7 UA N N 
? 7 VA N N 
? 7 WA N N 
? 7 XA N N 
? 7 AB N N 
? 7 BB N N 
? 7 CB N N 
? 7 DB N N 
? 7 EB N N 
? 7 FB N N 
? 7 GB N N 
? 7 HB N N 
? 7 IB N N 
? 7 JB N N 
? 7 KB N N 
? 7 LB N N 
? 7 MB N N 
? 7 NB N N 
? 7 OB N N 
? 7 PB N N 
? 7 QB N N 
? 7 RB N N 
? 7 SB N N 
? 7 TB N N 
? 7 UB N N 
? 7 VB N N 
? 7 WB N N 
? 7 XB N N 
? 7 YB N N 
? 7 ZB N N 
? 7 AC N N 
? 7 BC N N 
? 7 CC N N 
? 7 DC N N 
? 7 EC N N 
? 7 FC N N 
? 7 GC N N 
? 7 HC N N 
? 7 IC N N 
? 7 JC N N 
? 7 KC N N 
? 7 LC N N 
? 7 MC N N 
? 7 NC N N 
? 7 OC N N 
? 7 PC N N 
? 7 QC N N 
? 7 RC N N 
? 7 SC N N 
#
_chem_comp.formula           'C55 H72 Mg N4 O5' 
_chem_comp.formula_weight    893.489 
_chem_comp.id                CLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHLOROPHYLL A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MG NA CLA sing 1 n n 
MG NB CLA sing 2 n n 
MG NC CLA sing 3 n n 
MG ND CLA sing 4 n n 
CHA C1A CLA sing 5 n n 
CHA C4D CLA doub 6 n n 
CHA CBD CLA sing 7 n n 
CHB C4A CLA doub 8 n n 
CHB C1B CLA sing 9 n n 
CHB HHB CLA sing 10 n n 
CHC C4B CLA sing 11 n n 
CHC C1C CLA doub 12 n n 
CHC HHC CLA sing 13 n n 
CHD C4C CLA sing 14 n n 
CHD C1D CLA doub 15 n n 
CHD HHD CLA sing 16 n n 
NA C1A CLA doub 17 n n 
NA C4A CLA sing 18 n n 
C1A C2A CLA sing 19 n n 
C2A C3A CLA sing 20 n n 
C2A CAA CLA sing 21 n n 
C2A H2A CLA sing 22 n n 
C3A C4A CLA sing 23 n n 
C3A CMA CLA sing 24 n n 
C3A H3A CLA sing 25 n n 
CMA HMA1 CLA sing 26 n n 
CMA HMA2 CLA sing 27 n n 
CMA HMA3 CLA sing 28 n n 
CAA CBA CLA sing 29 n n 
CAA HAA1 CLA sing 30 n n 
CAA HAA2 CLA sing 31 n n 
CBA CGA CLA sing 32 n n 
CBA HBA1 CLA sing 33 n n 
CBA HBA2 CLA sing 34 n n 
CGA O1A CLA doub 35 n n 
CGA O2A CLA sing 36 n n 
O2A C1 CLA sing 37 n n 
NB C1B CLA sing 38 n y 
NB C4B CLA sing 39 n y 
C1B C2B CLA doub 40 n y 
C2B C3B CLA sing 41 n y 
C2B CMB CLA sing 42 n n 
C3B C4B CLA doub 43 n y 
C3B CAB CLA sing 44 n n 
CMB HMB1 CLA sing 45 n n 
CMB HMB2 CLA sing 46 n n 
CMB HMB3 CLA sing 47 n n 
CAB CBB CLA doub 48 n n 
CAB HAB CLA sing 49 n n 
CBB HBB1 CLA sing 50 n n 
CBB HBB2 CLA sing 51 n n 
NC C1C CLA sing 52 n n 
NC C4C CLA doub 53 n n 
C1C C2C CLA sing 54 n n 
C2C C3C CLA doub 55 n n 
C2C CMC CLA sing 56 n n 
C3C C4C CLA sing 57 n n 
C3C CAC CLA sing 58 n n 
CMC HMC1 CLA sing 59 n n 
CMC HMC2 CLA sing 60 n n 
CMC HMC3 CLA sing 61 n n 
CAC CBC CLA sing 62 n n 
CAC HAC1 CLA sing 63 n n 
CAC HAC2 CLA sing 64 n n 
CBC HBC1 CLA sing 65 n n 
CBC HBC2 CLA sing 66 n n 
CBC HBC3 CLA sing 67 n n 
ND C1D CLA sing 68 n n 
ND C4D CLA sing 69 n n 
C1D C2D CLA sing 70 n n 
C2D C3D CLA doub 71 n n 
C2D CMD CLA sing 72 n n 
C3D C4D CLA sing 73 n n 
C3D CAD CLA sing 74 n n 
CMD HMD1 CLA sing 75 n n 
CMD HMD2 CLA sing 76 n n 
CMD HMD3 CLA sing 77 n n 
CAD OBD CLA doub 78 n n 
CAD CBD CLA sing 79 n n 
CBD CGD CLA sing 80 n n 
CBD HBD CLA sing 81 n n 
CGD O1D CLA doub 82 n n 
CGD O2D CLA sing 83 n n 
O2D CED CLA sing 84 n n 
CED HED1 CLA sing 85 n n 
CED HED2 CLA sing 86 n n 
CED HED3 CLA sing 87 n n 
C1 C2 CLA sing 88 n n 
C1 H11 CLA sing 89 n n 
C1 H12 CLA sing 90 n n 
C2 C3 CLA doub 91 e n 
C2 H2 CLA sing 92 n n 
C3 C4 CLA sing 93 n n 
C3 C5 CLA sing 94 n n 
C4 H41 CLA sing 95 n n 
C4 H42 CLA sing 96 n n 
C4 H43 CLA sing 97 n n 
C5 C6 CLA sing 98 n n 
C5 H51 CLA sing 99 n n 
C5 H52 CLA sing 100 n n 
C6 C7 CLA sing 101 n n 
C6 H61 CLA sing 102 n n 
C6 H62 CLA sing 103 n n 
C7 C8 CLA sing 104 n n 
C7 H71 CLA sing 105 n n 
C7 H72 CLA sing 106 n n 
C8 C9 CLA sing 107 n n 
C8 C10 CLA sing 108 n n 
C8 H8 CLA sing 109 n n 
C9 H91 CLA sing 110 n n 
C9 H92 CLA sing 111 n n 
C9 H93 CLA sing 112 n n 
C10 C11 CLA sing 113 n n 
C10 H101 CLA sing 114 n n 
C10 H102 CLA sing 115 n n 
C11 C12 CLA sing 116 n n 
C11 H111 CLA sing 117 n n 
C11 H112 CLA sing 118 n n 
C12 C13 CLA sing 119 n n 
C12 H121 CLA sing 120 n n 
C12 H122 CLA sing 121 n n 
C13 C14 CLA sing 122 n n 
C13 C15 CLA sing 123 n n 
C13 H13 CLA sing 124 n n 
C14 H141 CLA sing 125 n n 
C14 H142 CLA sing 126 n n 
C14 H143 CLA sing 127 n n 
C15 C16 CLA sing 128 n n 
C15 H151 CLA sing 129 n n 
C15 H152 CLA sing 130 n n 
C16 C17 CLA sing 131 n n 
C16 H161 CLA sing 132 n n 
C16 H162 CLA sing 133 n n 
C17 C18 CLA sing 134 n n 
C17 H171 CLA sing 135 n n 
C17 H172 CLA sing 136 n n 
C18 C19 CLA sing 137 n n 
C18 C20 CLA sing 138 n n 
C18 H18 CLA sing 139 n n 
C19 H191 CLA sing 140 n n 
C19 H192 CLA sing 141 n n 
C19 H193 CLA sing 142 n n 
C20 H201 CLA sing 143 n n 
C20 H202 CLA sing 144 n n 
C20 H203 CLA sing 145 n n 
#
_atom_sites.entry_id                     2PPS 
_atom_sites.fract_transf_matrix[1][1]    0.003497 
_atom_sites.fract_transf_matrix[1][2]    0.002019 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004037 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 CLA A 1 2001 2001 CLA CLA . 
H 7 CLA A 1 2006 2006 CLA CLA . 
I 7 CLA A 1 2502 2502 CLA CLA . 
J 7 CLA A 1 3005 3005 CLA CLA . 
K 7 CLA A 1 3007 3007 CLA CLA . 
L 7 CLA A 1 3009 3009 CLA CLA . 
M 7 CLA A 1 3013 3013 CLA CLA . 
N 7 CLA A 1 3014 3014 CLA CLA . 
O 7 CLA A 1 3016 3016 CLA CLA . 
P 7 CLA A 1 3017 3017 CLA CLA . 
Q 7 CLA A 1 3018 3018 CLA CLA . 
R 7 CLA A 1 3021 3021 CLA CLA . 
S 7 CLA A 1 3024 3024 CLA CLA . 
T 7 CLA A 1 3026 3026 CLA CLA . 
U 7 CLA A 1 3027 3027 CLA CLA . 
V 7 CLA A 1 3029 3029 CLA CLA . 
W 7 CLA A 1 3030 3030 CLA CLA . 
X 7 CLA A 1 3032 3032 CLA CLA . 
Y 7 CLA A 1 3039 3039 CLA CLA . 
Z 7 CLA A 1 3040 3040 CLA CLA . 
AA 7 CLA A 1 3041 3041 CLA CLA . 
BA 7 CLA A 1 3043 3043 CLA CLA . 
CA 7 CLA A 1 3045 3045 CLA CLA . 
DA 7 CLA A 1 3047 3047 CLA CLA . 
EA 7 CLA A 1 3048 3048 CLA CLA . 
FA 7 CLA A 1 3052 3052 CLA CLA . 
GA 7 CLA A 1 3053 3053 CLA CLA . 
HA 7 CLA A 1 3056 3056 CLA CLA . 
IA 7 CLA A 1 3057 3057 CLA CLA . 
JA 7 CLA A 1 3058 3058 CLA CLA . 
KA 7 CLA A 1 3062 3062 CLA CLA . 
LA 7 CLA A 1 3065 3065 CLA CLA . 
MA 7 CLA A 1 3067 3067 CLA CLA . 
NA 7 CLA A 1 3068 3068 CLA CLA . 
OA 7 CLA A 1 3071 3071 CLA CLA . 
PA 7 CLA A 1 3072 3072 CLA CLA . 
QA 7 CLA A 1 3073 3073 CLA CLA . 
RA 7 CLA A 1 3077 3077 CLA CLA . 
SA 7 CLA A 1 3078 3078 CLA CLA . 
TA 7 CLA A 1 3079 3079 CLA CLA . 
UA 7 CLA B 1 2002 2002 CLA CLA . 
VA 7 CLA B 1 2003 2003 CLA CLA . 
WA 7 CLA B 1 2004 2004 CLA CLA . 
XA 7 CLA B 1 2005 2005 CLA CLA . 
YA 8 PQN B 1 2007 2007 PQN PQN . 
ZA 9 SF4 B 1 2008 2008 SF4 FS4 . 
AB 7 CLA B 1 2501 2501 CLA CLA . 
BB 7 CLA B 1 3001 3001 CLA CLA . 
CB 7 CLA B 1 3003 3003 CLA CLA . 
DB 7 CLA B 1 3006 3006 CLA CLA . 
EB 7 CLA B 1 3008 3008 CLA CLA . 
FB 7 CLA B 1 3010 3010 CLA CLA . 
GB 7 CLA B 1 3011 3011 CLA CLA . 
HB 7 CLA B 1 3015 3015 CLA CLA . 
IB 7 CLA B 1 3019 3019 CLA CLA . 
JB 7 CLA B 1 3020 3020 CLA CLA . 
KB 7 CLA B 1 3023 3023 CLA CLA . 
LB 7 CLA B 1 3025 3025 CLA CLA . 
MB 7 CLA B 1 3028 3028 CLA CLA . 
NB 7 CLA B 1 3034 3034 CLA CLA . 
OB 7 CLA B 1 3035 3035 CLA CLA . 
PB 7 CLA B 1 3037 3037 CLA CLA . 
QB 7 CLA B 1 3042 3042 CLA CLA . 
RB 7 CLA B 1 3044 3044 CLA CLA . 
SB 7 CLA B 1 3046 3046 CLA CLA . 
TB 7 CLA B 1 3055 3055 CLA CLA . 
UB 7 CLA B 1 3060 3060 CLA CLA . 
VB 7 CLA B 1 3063 3063 CLA CLA . 
WB 7 CLA B 1 3066 3066 CLA CLA . 
XB 7 CLA B 1 3069 3069 CLA CLA . 
YB 7 CLA B 1 3070 3070 CLA CLA . 
ZB 7 CLA B 1 3074 3074 CLA CLA . 
AC 7 CLA B 1 3075 3075 CLA CLA . 
BC 7 CLA B 1 3076 3076 CLA CLA . 
CC 7 CLA B 1 3080 3080 CLA CLA . 
DC 7 CLA B 1 3081 3081 CLA CLA . 
EC 7 CLA L 1 3036 3036 CLA CLA . 
FC 7 CLA L 1 3038 3038 CLA CLA . 
GC 7 CLA L 1 3049 3049 CLA CLA . 
HC 7 CLA L 1 3064 3064 CLA CLA . 
IC 7 CLA K 1 3050 3050 CLA CLA . 
JC 7 CLA K 1 3051 3051 CLA CLA . 
KC 7 CLA F 1 3002 3002 CLA CLA . 
LC 7 CLA F 1 3004 3004 CLA CLA . 
MC 7 CLA F 1 3012 3012 CLA CLA . 
NC 7 CLA F 1 3022 3022 CLA CLA . 
OC 7 CLA F 1 3031 3031 CLA CLA . 
PC 7 CLA F 1 3033 3033 CLA CLA . 
QC 7 CLA F 1 3054 3054 CLA CLA . 
RC 7 CLA F 1 3059 3059 CLA CLA . 
SC 7 CLA F 1 3061 3061 CLA CLA . 
TC 9 SF4 C 1 2009 2009 SF4 FS4 . 
UC 9 SF4 C 1 2010 2010 SF4 FS4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MG MG CLA . . . RC 7 86.997 157.582 61.397 1 20 ? MG CLA 3059 F 1 
HETATM 2 C CHA CLA . . . RC 7 85.937 158.788 58.406 1 20 ? CHA CLA 3059 F 1 
HETATM 3 C CHB CLA . . . RC 7 90.195 158.306 60.577 1 20 ? CHB CLA 3059 F 1 
HETATM 4 C CHC CLA . . . RC 7 88.127 155.835 64.15 1 20 ? CHC CLA 3059 F 1 
HETATM 5 C CHD CLA . . . RC 7 83.82 156.283 61.941 1 20 ? CHD CLA 3059 F 1 
HETATM 6 N NA CLA . . . RC 7 87.924 158.323 59.73 1 20 ? NA CLA 3059 F 1 
HETATM 7 C C1A CLA . . . RC 7 87.29 158.863 58.657 1 20 ? C1A CLA 3059 F 1 
HETATM 8 C C2A CLA . . . RC 7 88.279 159.546 57.81 1 20 ? C2A CLA 3059 F 1 
HETATM 9 C C3A CLA . . . RC 7 89.484 159.395 58.411 1 20 ? C3A CLA 3059 F 1 
HETATM 10 C C4A CLA . . . RC 7 89.26 158.661 59.647 1 20 ? C4A CLA 3059 F 1 
HETATM 11 N NB CLA . . . RC 7 88.929 157.051 62.257 1 20 ? NB CLA 3059 F 1 
HETATM 12 C C1B CLA . . . RC 7 90.067 157.631 61.795 1 20 ? C1B CLA 3059 F 1 
HETATM 13 C C2B CLA . . . RC 7 91.208 157.468 62.769 1 20 ? C2B CLA 3059 F 1 
HETATM 14 C C3B CLA . . . RC 7 90.583 156.613 63.895 1 20 ? C3B CLA 3059 F 1 
HETATM 15 C C4B CLA . . . RC 7 89.144 156.441 63.439 1 20 ? C4B CLA 3059 F 1 
HETATM 16 N NC CLA . . . RC 7 86.13 156.23 62.669 1 20 ? NC CLA 3059 F 1 
HETATM 17 C C1C CLA . . . RC 7 86.788 155.779 63.736 1 20 ? C1C CLA 3059 F 1 
HETATM 18 C C2C CLA . . . RC 7 85.932 155.107 64.625 1 20 ? C2C CLA 3059 F 1 
HETATM 19 C C3C CLA . . . RC 7 84.619 155.191 64.084 1 20 ? C3C CLA 3059 F 1 
HETATM 20 C C4C CLA . . . RC 7 84.791 155.92 62.847 1 20 ? C4C CLA 3059 F 1 
HETATM 21 N ND CLA . . . RC 7 85.191 157.508 60.332 1 20 ? ND CLA 3059 F 1 
HETATM 22 C C1D CLA . . . RC 7 84.002 157.012 60.781 1 20 ? C1D CLA 3059 F 1 
HETATM 23 C C2D CLA . . . RC 7 82.932 157.368 59.863 1 20 ? C2D CLA 3059 F 1 
HETATM 24 C C3D CLA . . . RC 7 83.524 158.095 58.853 1 20 ? C3D CLA 3059 F 1 
HETATM 25 C C4D CLA . . . RC 7 84.952 158.159 59.185 1 20 ? C4D CLA 3059 F 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#