data_2PQK # _model_server_result.job_id komfJxzNgdc0n7BgYXA-RQ _model_server_result.datetime_utc '2024-11-04 20:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 2PQK # _exptl.entry_id 2PQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PQK _cell.length_a 53.087 _cell.length_b 71.846 _cell.length_c 118.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3,4 A,C,D,E,G 3 1,2,3,4 B,F,H 3 5,6,7,8 A,B,C,D,E,F,G,H 4 1,2 A,C,D,E,G 5 1,2 B,F,H 5 7,8 A,C,D,E,G 6 1 B,F,H 6 8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 71.846 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 118.145 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 71.846 118.145 5 'crystal symmetry operation' 5_455 x-1/2,y+1/2,z+1/2 1 0 0 0 1 0 0 0 1 -26.5435 35.923 59.0725 6 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 26.5435 35.923 59.0725 7 'crystal symmetry operation' 7_555 -x+1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 26.5435 35.923 59.0725 8 'crystal symmetry operation' 8_455 x-1/2,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 -26.5435 35.923 59.0725 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 117 A CYS 286 1_555 A SG CYS 117 A CYS 286 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc1 A OE2 GLU 71 A GLU 240 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc2 A OD1 ASP 72 A ASP 241 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A OD2 ASP 72 A ASP 241 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 A OD1 ASP 135 A ASP 304 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc5 A OD1 ASP 144 A ASP 313 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc6 A OE2 GLU 148 A GLU 317 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc7 B OE1 GLU 13 B GLU 9 1_555 F ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 C ZN ZN . A ZN 401 1_555 G O HOH . A HOH 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc9 C ZN ZN . A ZN 401 1_555 G O HOH . A HOH 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc10 F ZN ZN . B ZN 403 1_555 H O HOH . B HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 F ZN ZN . B ZN 403 1_555 H O HOH . B HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? metalc ? metalc12 C ZN ZN . A ZN 401 1_555 A NE2 HIS 83 A HIS 252 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc13 D ZN ZN . A ZN 402 1_555 A NE2 HIS 55 A HIS 224 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc14 D ZN ZN . A ZN 402 1_555 B OE1 GLU 20 B GLU 16 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc15 D ZN ZN . A ZN 402 1_555 B OE2 GLU 20 B GLU 16 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc16 E NA NA . A NA 404 1_555 A OE2 GLU 123 A GLU 292 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc17 F ZN ZN . B ZN 403 1_555 A NE2 HIS 151 A HIS 320 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PQK _atom_sites.fract_transf_matrix[1][1] 0.018837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 3 ZN A 1 402 402 ZN ZN . E 4 NA A 1 404 404 NA NA . F 3 ZN B 1 403 403 ZN ZN . G 5 HOH A 1 1 1 HOH HOH . G 5 HOH A 2 2 2 HOH HOH . G 5 HOH A 3 3 3 HOH HOH . G 5 HOH A 4 4 4 HOH HOH . G 5 HOH A 5 5 5 HOH HOH . G 5 HOH A 6 6 6 HOH HOH . G 5 HOH A 7 7 7 HOH HOH . G 5 HOH A 8 8 8 HOH HOH . G 5 HOH A 9 9 9 HOH HOH . G 5 HOH A 10 10 10 HOH HOH . G 5 HOH A 11 11 11 HOH HOH . G 5 HOH A 12 12 12 HOH HOH . G 5 HOH A 13 13 13 HOH HOH . G 5 HOH A 14 14 14 HOH HOH . G 5 HOH A 15 15 15 HOH HOH . G 5 HOH A 16 16 16 HOH HOH . G 5 HOH A 17 21 21 HOH HOH . G 5 HOH A 18 22 22 HOH HOH . G 5 HOH A 19 23 23 HOH HOH . G 5 HOH A 20 24 24 HOH HOH . G 5 HOH A 21 25 25 HOH HOH . G 5 HOH A 22 26 26 HOH HOH . G 5 HOH A 23 29 29 HOH HOH . G 5 HOH A 24 30 30 HOH HOH . G 5 HOH A 25 31 31 HOH HOH . G 5 HOH A 26 32 32 HOH HOH . G 5 HOH A 27 33 33 HOH HOH . G 5 HOH A 28 35 35 HOH HOH . G 5 HOH A 29 36 36 HOH HOH . G 5 HOH A 30 38 38 HOH HOH . G 5 HOH A 31 39 39 HOH HOH . G 5 HOH A 32 40 40 HOH HOH . G 5 HOH A 33 42 42 HOH HOH . G 5 HOH A 34 43 43 HOH HOH . G 5 HOH A 35 45 45 HOH HOH . G 5 HOH A 36 46 46 HOH HOH . G 5 HOH A 37 48 48 HOH HOH . G 5 HOH A 38 49 49 HOH HOH . G 5 HOH A 39 52 52 HOH HOH . G 5 HOH A 40 53 53 HOH HOH . G 5 HOH A 41 54 54 HOH HOH . G 5 HOH A 42 55 55 HOH HOH . G 5 HOH A 43 56 56 HOH HOH . G 5 HOH A 44 57 57 HOH HOH . G 5 HOH A 45 58 58 HOH HOH . G 5 HOH A 46 59 59 HOH HOH . G 5 HOH A 47 60 60 HOH HOH . G 5 HOH A 48 62 62 HOH HOH . G 5 HOH A 49 64 64 HOH HOH . G 5 HOH A 50 65 65 HOH HOH . G 5 HOH A 51 67 67 HOH HOH . G 5 HOH A 52 68 68 HOH HOH . G 5 HOH A 53 69 69 HOH HOH . G 5 HOH A 54 70 70 HOH HOH . G 5 HOH A 55 71 71 HOH HOH . G 5 HOH A 56 72 72 HOH HOH . G 5 HOH A 57 73 73 HOH HOH . G 5 HOH A 58 75 75 HOH HOH . G 5 HOH A 59 76 76 HOH HOH . G 5 HOH A 60 78 78 HOH HOH . G 5 HOH A 61 79 79 HOH HOH . G 5 HOH A 62 80 80 HOH HOH . G 5 HOH A 63 81 81 HOH HOH . G 5 HOH A 64 82 82 HOH HOH . G 5 HOH A 65 84 84 HOH HOH . G 5 HOH A 66 85 85 HOH HOH . G 5 HOH A 67 86 86 HOH HOH . G 5 HOH A 68 88 88 HOH HOH . G 5 HOH A 69 90 90 HOH HOH . G 5 HOH A 70 91 91 HOH HOH . G 5 HOH A 71 92 92 HOH HOH . G 5 HOH A 72 93 93 HOH HOH . G 5 HOH A 73 94 94 HOH HOH . G 5 HOH A 74 96 96 HOH HOH . G 5 HOH A 75 97 97 HOH HOH . G 5 HOH A 76 98 98 HOH HOH . G 5 HOH A 77 99 99 HOH HOH . G 5 HOH A 78 100 100 HOH HOH . G 5 HOH A 79 101 101 HOH HOH . G 5 HOH A 80 102 102 HOH HOH . G 5 HOH A 81 103 103 HOH HOH . G 5 HOH A 82 104 104 HOH HOH . G 5 HOH A 83 105 105 HOH HOH . G 5 HOH A 84 106 106 HOH HOH . G 5 HOH A 85 107 107 HOH HOH . G 5 HOH A 86 108 108 HOH HOH . G 5 HOH A 87 109 109 HOH HOH . G 5 HOH A 88 110 110 HOH HOH . G 5 HOH A 89 111 111 HOH HOH . G 5 HOH A 90 112 112 HOH HOH . G 5 HOH A 91 114 114 HOH HOH . G 5 HOH A 92 115 115 HOH HOH . G 5 HOH A 93 116 116 HOH HOH . G 5 HOH A 94 117 117 HOH HOH . G 5 HOH A 95 118 118 HOH HOH . H 5 HOH B 1 404 17 HOH HOH . H 5 HOH B 2 405 18 HOH HOH . H 5 HOH B 3 406 19 HOH HOH . H 5 HOH B 4 407 20 HOH HOH . H 5 HOH B 5 408 27 HOH HOH . H 5 HOH B 6 409 28 HOH HOH . H 5 HOH B 7 410 34 HOH HOH . H 5 HOH B 8 411 37 HOH HOH . H 5 HOH B 9 412 41 HOH HOH . H 5 HOH B 10 413 44 HOH HOH . H 5 HOH B 11 414 47 HOH HOH . H 5 HOH B 12 415 50 HOH HOH . H 5 HOH B 13 416 51 HOH HOH . H 5 HOH B 14 417 61 HOH HOH . H 5 HOH B 15 418 63 HOH HOH . H 5 HOH B 16 419 66 HOH HOH . H 5 HOH B 17 420 74 HOH HOH . H 5 HOH B 18 421 77 HOH HOH . H 5 HOH B 19 422 83 HOH HOH . H 5 HOH B 20 423 87 HOH HOH . H 5 HOH B 21 424 89 HOH HOH . H 5 HOH B 22 425 95 HOH HOH . H 5 HOH B 23 426 113 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -10.681 _atom_site.Cartn_y 16.152 _atom_site.Cartn_z 28.218 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #