data_2PR2 # _model_server_result.job_id 4F_5zTPDibooFevY7yUS0w _model_server_result.datetime_utc '2025-09-04 23:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2PR2 # _exptl.entry_id 2PR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 850.515 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PR2 _cell.length_a 99.128 _cell.length_b 99.128 _cell.length_c 139.274 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 49.564 -85.847366 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.424667 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 49.564 -85.847366 46.424667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N8 O18 P3' _chem_comp.formula_weight 850.515 _chem_comp.id DG1 _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '{(2R,3S,4R,5R)-5-[(4S)-3-(AMINOCARBONYL)-4-ISONICOTINOYLPYRIDIN-1(4H)-YL]-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL}METHYL [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT CAR DG1 sing 83 n y CAT CBN DG1 doub 84 n y CAT HAT DG1 sing 85 n n CAR NAZ DG1 doub 86 n y CAR HAR DG1 sing 87 n n NAZ CAS DG1 sing 88 n y CAS CAU DG1 doub 89 n y CAS HAS DG1 sing 90 n n CAU CBN DG1 sing 91 n y CAU HAU DG1 sing 92 n n CBN CBK DG1 sing 93 n n CBK OAD DG1 doub 94 n n CBK CBT DG1 sing 95 n n CBT CBL DG1 sing 96 n n CBT CAO DG1 sing 97 n n CBT HBT DG1 sing 98 n n CBL CBJ DG1 sing 99 n n CBL CAQ DG1 doub 100 n n CAQ NBZ DG1 sing 101 n n CAQ HAQ DG1 sing 102 n n CBJ OAC DG1 doub 103 n n CBJ NAA DG1 sing 104 n n NAA HAA1 DG1 sing 105 n n NAA HAA2 DG1 sing 106 n n CAO CAP DG1 doub 107 n n CAO HAO DG1 sing 108 n n CAP NBZ DG1 sing 109 n n CAP HAP DG1 sing 110 n n NBZ C1' DG1 sing 111 n n C1' C2' DG1 sing 112 n n C1' O4' DG1 sing 113 n n C1' H1' DG1 sing 114 n n O4' C4' DG1 sing 115 n n C2' O2' DG1 sing 116 n n C2' C3' DG1 sing 117 n n C2' H2' DG1 sing 118 n n O2' HO2' DG1 sing 119 n n C3' C4' DG1 sing 120 n n C3' O3' DG1 sing 121 n n C3' H3' DG1 sing 122 n n O3' HO3' DG1 sing 123 n n C4' C5' DG1 sing 124 n n C4' H4' DG1 sing 125 n n C5' O5' DG1 sing 126 n n C5' "H5'1" DG1 sing 127 n n C5' "H5'2" DG1 sing 128 n n O5' PCC DG1 sing 129 n n PCC OAF DG1 doub 130 n n PCC OAM DG1 sing 131 n n PCC OBI DG1 sing 132 n n OAM HOAM DG1 sing 133 n n OBI PCD DG1 sing 134 n n PCD OAG DG1 doub 135 n n PCD OAN DG1 sing 136 n n PCD OBE DG1 sing 137 n n OAN HOAN DG1 sing 138 n n OBE CAY DG1 sing 139 n n CAY CBV DG1 sing 140 n n CAY HAY1 DG1 sing 141 n n CAY HAY2 DG1 sing 142 n n CBV CBS DG1 sing 143 n n CBV OBG DG1 sing 144 n n CBV HBV DG1 sing 145 n n OBG CBY DG1 sing 146 n n CBS OAJ DG1 sing 147 n n CBS CBW DG1 sing 148 n n CBS HBS DG1 sing 149 n n OAJ HOAJ DG1 sing 150 n n CBW OBH DG1 sing 151 n n CBW CBY DG1 sing 152 n n CBW HBW DG1 sing 153 n n OBH PCB DG1 sing 154 n n PCB OAE DG1 doub 155 n n PCB OAL DG1 sing 156 n n PCB OAK DG1 sing 157 n n OAK HOAK DG1 sing 158 n n OAL HOAL DG1 sing 159 n n CBY N9 DG1 sing 160 n n CBY HBY DG1 sing 161 n n N9 C8 DG1 sing 162 n y N9 C4 DG1 sing 163 n y C8 N7 DG1 doub 164 n y C8 H8 DG1 sing 165 n n N7 C5 DG1 sing 166 n y C5 C4 DG1 doub 167 n y C5 C6 DG1 sing 168 n y C4 N3 DG1 sing 169 n y N3 C2 DG1 doub 170 n y C2 N1 DG1 sing 171 n y C2 H2 DG1 sing 172 n n N1 C6 DG1 doub 173 n y C6 N6 DG1 sing 174 n n N6 HN61 DG1 sing 175 n n N6 HN62 DG1 sing 176 n n # _atom_sites.entry_id 2PR2 _atom_sites.fract_transf_matrix[1][1] 0.010088 _atom_sites.fract_transf_matrix[1][2] 0.005824 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DG1 A 1 300 300 DG1 1DG . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAT DG1 . . . B 2 12.215 -37.067 10.512 1 30.91 ? CAT DG1 300 A 1 HETATM 2 C CAR DG1 . . . B 2 13.515 -37.409 10.301 1 32.32 ? CAR DG1 300 A 1 HETATM 3 N NAZ DG1 . . . B 2 13.872 -38.651 10.324 1 31.28 ? NAZ DG1 300 A 1 HETATM 4 C CAS DG1 . . . B 2 13.043 -39.618 10.543 1 29.67 ? CAS DG1 300 A 1 HETATM 5 C CAU DG1 . . . B 2 11.732 -39.344 10.751 1 28.68 ? CAU DG1 300 A 1 HETATM 6 C CBN DG1 . . . B 2 11.317 -38.056 10.729 1 29.34 ? CBN DG1 300 A 1 HETATM 7 C CBK DG1 . . . B 2 9.921 -37.68 10.963 1 30.62 ? CBK DG1 300 A 1 HETATM 8 O OAD DG1 . . . B 2 9.624 -36.534 10.759 1 28.47 ? OAD DG1 300 A 1 HETATM 9 C CBT DG1 . . . B 2 8.91 -38.654 11.554 1 33.38 ? CBT DG1 300 A 1 HETATM 10 C CBL DG1 . . . B 2 7.558 -38.056 11.296 1 33.83 ? CBL DG1 300 A 1 HETATM 11 C CAQ DG1 . . . B 2 6.794 -37.527 12.317 1 34.26 ? CAQ DG1 300 A 1 HETATM 12 C CBJ DG1 . . . B 2 7.157 -38.009 9.829 1 34.62 ? CBJ DG1 300 A 1 HETATM 13 O OAC DG1 . . . B 2 7.89 -38.485 8.995 1 34.6 ? OAC DG1 300 A 1 HETATM 14 N NAA DG1 . . . B 2 6.03 -37.449 9.527 1 33.32 ? NAA DG1 300 A 1 HETATM 15 C CAO DG1 . . . B 2 9.185 -38.742 13.012 1 33.18 ? CAO DG1 300 A 1 HETATM 16 C CAP DG1 . . . B 2 8.38 -38.172 13.946 1 34.02 ? CAP DG1 300 A 1 HETATM 17 N NBZ DG1 . . . B 2 7.192 -37.612 13.619 1 34.89 ? NBZ DG1 300 A 1 HETATM 18 C C1' DG1 . . . B 2 6.436 -37.044 14.692 1 34.01 ? C1' DG1 300 A 1 HETATM 19 O O4' DG1 . . . B 2 5.199 -37.611 14.828 1 34.7 ? O4' DG1 300 A 1 HETATM 20 C C2' DG1 . . . B 2 6.232 -35.663 14.215 1 34.29 ? C2' DG1 300 A 1 HETATM 21 O O2' DG1 . . . B 2 7.216 -34.82 14.695 1 32.34 ? O2' DG1 300 A 1 HETATM 22 C C3' DG1 . . . B 2 5.077 -35.331 15.019 1 34.86 ? C3' DG1 300 A 1 HETATM 23 O O3' DG1 . . . B 2 5.598 -35.195 16.286 1 35.35 ? O3' DG1 300 A 1 HETATM 24 C C4' DG1 . . . B 2 4.281 -36.594 14.921 1 37.11 ? C4' DG1 300 A 1 HETATM 25 C C5' DG1 . . . B 2 3.311 -36.716 13.795 1 38.4 ? C5' DG1 300 A 1 HETATM 26 O O5' DG1 . . . B 2 3.465 -35.767 12.836 1 42.33 ? O5' DG1 300 A 1 HETATM 27 P PCC DG1 . . . B 2 2.771 -35.75 11.662 1 40.94 ? PCC DG1 300 A 1 HETATM 28 O OAM DG1 . . . B 2 1.841 -36.731 11.694 1 42.47 ? OAM DG1 300 A 1 HETATM 29 O OAF DG1 . . . B 2 3.682 -35.794 10.662 1 43.58 ? OAF DG1 300 A 1 HETATM 30 O OBI DG1 . . . B 2 2.059 -34.446 11.705 1 49.27 ? OBI DG1 300 A 1 HETATM 31 P PCD DG1 . . . B 2 2.551 -33.021 12.266 1 55.51 ? PCD DG1 300 A 1 HETATM 32 O OAN DG1 . . . B 2 3.907 -33.026 12.682 1 55.96 ? OAN DG1 300 A 1 HETATM 33 O OAG DG1 . . . B 2 2.228 -32.087 11.251 1 57.32 ? OAG DG1 300 A 1 HETATM 34 O OBE DG1 . . . B 2 1.686 -32.758 13.549 1 54.75 ? OBE DG1 300 A 1 HETATM 35 C CAY DG1 . . . B 2 0.289 -32.901 13.638 1 53.6 ? CAY DG1 300 A 1 HETATM 36 C CBV DG1 . . . B 2 -0.488 -31.635 13.932 1 53.41 ? CBV DG1 300 A 1 HETATM 37 O OBG DG1 . . . B 2 -0.019 -31.022 15.068 1 51.67 ? OBG DG1 300 A 1 HETATM 38 C CBS DG1 . . . B 2 -0.561 -30.542 12.861 1 55.71 ? CBS DG1 300 A 1 HETATM 39 O OAJ DG1 . . . B 2 -1.881 -30.078 12.715 1 60.25 ? OAJ DG1 300 A 1 HETATM 40 C CBW DG1 . . . B 2 0.139 -29.421 13.517 1 54.75 ? CBW DG1 300 A 1 HETATM 41 O OBH DG1 . . . B 2 -0.334 -28.158 13.048 1 59.44 ? OBH DG1 300 A 1 HETATM 42 P PCB DG1 . . . B 2 -0.421 -27.755 11.579 1 62.79 ? PCB DG1 300 A 1 HETATM 43 O OAK DG1 . . . B 2 -0.598 -26.31 11.556 1 60.51 ? OAK DG1 300 A 1 HETATM 44 O OAL DG1 . . . B 2 -1.633 -28.472 11.09 1 63.39 ? OAL DG1 300 A 1 HETATM 45 O OAE DG1 . . . B 2 0.677 -28.033 10.74 1 63.15 ? OAE DG1 300 A 1 HETATM 46 C CBY DG1 . . . B 2 -0.371 -29.701 14.883 1 47.67 ? CBY DG1 300 A 1 HETATM 47 N N9 DG1 . . . B 2 -0.135 -28.56 15.677 1 44.94 ? N9 DG1 300 A 1 HETATM 48 C C8 DG1 . . . B 2 0.573 -27.538 15.294 1 43.61 ? C8 DG1 300 A 1 HETATM 49 N N7 DG1 . . . B 2 0.552 -26.62 16.216 1 44.5 ? N7 DG1 300 A 1 HETATM 50 C C5 DG1 . . . B 2 -0.195 -27.065 17.187 1 43.9 ? C5 DG1 300 A 1 HETATM 51 C C4 DG1 . . . B 2 -0.641 -28.291 16.834 1 43.8 ? C4 DG1 300 A 1 HETATM 52 N N3 DG1 . . . B 2 -1.434 -28.959 17.637 1 43.82 ? N3 DG1 300 A 1 HETATM 53 C C2 DG1 . . . B 2 -1.776 -28.463 18.777 1 43.64 ? C2 DG1 300 A 1 HETATM 54 N N1 DG1 . . . B 2 -1.375 -27.287 19.145 1 43.6 ? N1 DG1 300 A 1 HETATM 55 C C6 DG1 . . . B 2 -0.587 -26.559 18.393 1 43.94 ? C6 DG1 300 A 1 HETATM 56 N N6 DG1 . . . B 2 -0.206 -25.389 18.816 1 43.61 ? N6 DG1 300 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 56 #