data_2PRB # _model_server_result.job_id yi4k50NWChybk2WJGZungQ _model_server_result.datetime_utc '2024-11-16 20:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2prb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2PRB # _exptl.entry_id 2PRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PRB _cell.length_a 57.62 _cell.length_b 57.62 _cell.length_c 146.672 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2PRB _atom_sites.fract_transf_matrix[1][1] 0.017355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 1 COA COA . C 3 HOH A 1 502 2 HOH HOH . C 3 HOH A 2 503 3 HOH HOH . C 3 HOH A 3 504 4 HOH HOH . C 3 HOH A 4 505 5 HOH HOH . C 3 HOH A 5 506 6 HOH HOH . C 3 HOH A 6 507 7 HOH HOH . C 3 HOH A 7 508 8 HOH HOH . C 3 HOH A 8 509 9 HOH HOH . C 3 HOH A 9 510 10 HOH HOH . C 3 HOH A 10 511 11 HOH HOH . C 3 HOH A 11 512 13 HOH HOH . C 3 HOH A 12 513 14 HOH HOH . C 3 HOH A 13 514 15 HOH HOH . C 3 HOH A 14 515 16 HOH HOH . C 3 HOH A 15 516 19 HOH HOH . C 3 HOH A 16 517 20 HOH HOH . C 3 HOH A 17 518 21 HOH HOH . C 3 HOH A 18 519 22 HOH HOH . C 3 HOH A 19 520 23 HOH HOH . C 3 HOH A 20 521 24 HOH HOH . C 3 HOH A 21 522 25 HOH HOH . C 3 HOH A 22 523 26 HOH HOH . C 3 HOH A 23 524 27 HOH HOH . C 3 HOH A 24 525 28 HOH HOH . C 3 HOH A 25 526 29 HOH HOH . C 3 HOH A 26 527 30 HOH HOH . C 3 HOH A 27 528 31 HOH HOH . C 3 HOH A 28 529 32 HOH HOH . C 3 HOH A 29 530 33 HOH HOH . C 3 HOH A 30 531 35 HOH HOH . C 3 HOH A 31 532 36 HOH HOH . C 3 HOH A 32 533 37 HOH HOH . C 3 HOH A 33 534 38 HOH HOH . C 3 HOH A 34 535 39 HOH HOH . C 3 HOH A 35 536 40 HOH HOH . C 3 HOH A 36 537 45 HOH HOH . C 3 HOH A 37 538 46 HOH HOH . C 3 HOH A 38 539 47 HOH HOH . C 3 HOH A 39 540 49 HOH HOH . C 3 HOH A 40 541 50 HOH HOH . C 3 HOH A 41 542 51 HOH HOH . C 3 HOH A 42 543 52 HOH HOH . C 3 HOH A 43 544 53 HOH HOH . C 3 HOH A 44 545 54 HOH HOH . C 3 HOH A 45 546 55 HOH HOH . C 3 HOH A 46 547 56 HOH HOH . C 3 HOH A 47 548 59 HOH HOH . C 3 HOH A 48 549 60 HOH HOH . C 3 HOH A 49 550 61 HOH HOH . C 3 HOH A 50 551 62 HOH HOH . C 3 HOH A 51 552 63 HOH HOH . C 3 HOH A 52 553 64 HOH HOH . C 3 HOH A 53 554 65 HOH HOH . C 3 HOH A 54 555 66 HOH HOH . C 3 HOH A 55 556 67 HOH HOH . C 3 HOH A 56 557 68 HOH HOH . C 3 HOH A 57 558 69 HOH HOH . C 3 HOH A 58 559 70 HOH HOH . C 3 HOH A 59 560 71 HOH HOH . C 3 HOH A 60 561 72 HOH HOH . C 3 HOH A 61 562 73 HOH HOH . C 3 HOH A 62 563 75 HOH HOH . C 3 HOH A 63 564 76 HOH HOH . C 3 HOH A 64 565 77 HOH HOH . C 3 HOH A 65 566 78 HOH HOH . C 3 HOH A 66 567 79 HOH HOH . C 3 HOH A 67 568 80 HOH HOH . C 3 HOH A 68 569 82 HOH HOH . C 3 HOH A 69 570 83 HOH HOH . C 3 HOH A 70 571 84 HOH HOH . C 3 HOH A 71 572 85 HOH HOH . C 3 HOH A 72 573 86 HOH HOH . C 3 HOH A 73 574 87 HOH HOH . C 3 HOH A 74 575 88 HOH HOH . C 3 HOH A 75 576 89 HOH HOH . C 3 HOH A 76 577 90 HOH HOH . C 3 HOH A 77 578 92 HOH HOH . C 3 HOH A 78 579 93 HOH HOH . C 3 HOH A 79 580 94 HOH HOH . C 3 HOH A 80 581 95 HOH HOH . C 3 HOH A 81 582 96 HOH HOH . C 3 HOH A 82 583 97 HOH HOH . C 3 HOH A 83 584 98 HOH HOH . C 3 HOH A 84 585 99 HOH HOH . C 3 HOH A 85 586 100 HOH HOH . C 3 HOH A 86 587 101 HOH HOH . C 3 HOH A 87 588 102 HOH HOH . C 3 HOH A 88 589 103 HOH HOH . C 3 HOH A 89 590 104 HOH HOH . C 3 HOH A 90 591 106 HOH HOH . C 3 HOH A 91 592 107 HOH HOH . C 3 HOH A 92 593 108 HOH HOH . C 3 HOH A 93 594 109 HOH HOH . C 3 HOH A 94 595 112 HOH HOH . C 3 HOH A 95 596 114 HOH HOH . C 3 HOH A 96 597 116 HOH HOH . C 3 HOH A 97 598 118 HOH HOH . C 3 HOH A 98 599 121 HOH HOH . C 3 HOH A 99 600 122 HOH HOH . C 3 HOH A 100 601 123 HOH HOH . C 3 HOH A 101 602 126 HOH HOH . C 3 HOH A 102 603 127 HOH HOH . C 3 HOH A 103 604 128 HOH HOH . C 3 HOH A 104 605 131 HOH HOH . C 3 HOH A 105 606 132 HOH HOH . C 3 HOH A 106 607 133 HOH HOH . C 3 HOH A 107 608 134 HOH HOH . C 3 HOH A 108 609 137 HOH HOH . C 3 HOH A 109 610 139 HOH HOH . C 3 HOH A 110 611 140 HOH HOH . C 3 HOH A 111 612 144 HOH HOH . C 3 HOH A 112 613 149 HOH HOH . C 3 HOH A 113 614 154 HOH HOH . C 3 HOH A 114 615 155 HOH HOH . C 3 HOH A 115 616 160 HOH HOH . C 3 HOH A 116 617 166 HOH HOH . C 3 HOH A 117 618 182 HOH HOH . C 3 HOH A 118 619 183 HOH HOH . C 3 HOH A 119 620 184 HOH HOH . C 3 HOH A 120 621 185 HOH HOH . C 3 HOH A 121 622 186 HOH HOH . C 3 HOH A 122 623 187 HOH HOH . C 3 HOH A 123 624 189 HOH HOH . C 3 HOH A 124 625 190 HOH HOH . C 3 HOH A 125 626 191 HOH HOH . C 3 HOH A 126 627 192 HOH HOH . C 3 HOH A 127 628 193 HOH HOH . C 3 HOH A 128 629 194 HOH HOH . C 3 HOH A 129 630 195 HOH HOH . C 3 HOH A 130 631 196 HOH HOH . C 3 HOH A 131 632 197 HOH HOH . C 3 HOH A 132 633 198 HOH HOH . C 3 HOH A 133 634 199 HOH HOH . C 3 HOH A 134 635 200 HOH HOH . C 3 HOH A 135 636 201 HOH HOH . C 3 HOH A 136 637 202 HOH HOH . C 3 HOH A 137 638 203 HOH HOH . C 3 HOH A 138 639 204 HOH HOH . C 3 HOH A 139 640 205 HOH HOH . C 3 HOH A 140 641 206 HOH HOH . C 3 HOH A 141 642 207 HOH HOH . C 3 HOH A 142 643 208 HOH HOH . C 3 HOH A 143 644 209 HOH HOH . C 3 HOH A 144 645 210 HOH HOH . C 3 HOH A 145 646 211 HOH HOH . C 3 HOH A 146 647 212 HOH HOH . C 3 HOH A 147 648 213 HOH HOH . C 3 HOH A 148 649 214 HOH HOH . C 3 HOH A 149 650 215 HOH HOH . C 3 HOH A 150 651 216 HOH HOH . C 3 HOH A 151 652 217 HOH HOH . C 3 HOH A 152 653 218 HOH HOH . C 3 HOH A 153 654 219 HOH HOH . C 3 HOH A 154 655 220 HOH HOH . C 3 HOH A 155 656 221 HOH HOH . C 3 HOH A 156 657 222 HOH HOH . C 3 HOH A 157 658 223 HOH HOH . C 3 HOH A 158 659 224 HOH HOH . C 3 HOH A 159 660 225 HOH HOH . C 3 HOH A 160 661 226 HOH HOH . C 3 HOH A 161 662 227 HOH HOH . C 3 HOH A 162 663 228 HOH HOH . C 3 HOH A 163 664 229 HOH HOH . C 3 HOH A 164 665 230 HOH HOH . C 3 HOH A 165 666 231 HOH HOH . C 3 HOH A 166 667 232 HOH HOH . C 3 HOH A 167 668 233 HOH HOH . C 3 HOH A 168 669 234 HOH HOH . C 3 HOH A 169 670 235 HOH HOH . C 3 HOH A 170 671 236 HOH HOH . C 3 HOH A 171 672 237 HOH HOH . C 3 HOH A 172 673 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 -3.285 -1.73 -13.991 1 32.94 ? N1A COA 501 A 1 HETATM 2 C C2A COA . . . B 2 -3.501 -1.243 -12.714 1 32.91 ? C2A COA 501 A 1 HETATM 3 N N3A COA . . . B 2 -2.69 -0.237 -12.217 1 32.84 ? N3A COA 501 A 1 HETATM 4 C C4A COA . . . B 2 -1.682 0.274 -12.975 1 32.47 ? C4A COA 501 A 1 HETATM 5 C C5A COA . . . B 2 -1.452 -0.201 -14.262 1 32.78 ? C5A COA 501 A 1 HETATM 6 C C6A COA . . . B 2 -2.263 -1.214 -14.771 1 32.9 ? C6A COA 501 A 1 HETATM 7 N N6A COA . . . B 2 -2.159 -1.582 -16.045 1 33.5 ? N6A COA 501 A 1 HETATM 8 N N7A COA . . . B 2 -0.402 0.482 -14.773 1 32.7 ? N7A COA 501 A 1 HETATM 9 C C8A COA . . . B 2 0.032 1.371 -13.849 1 32.44 ? C8A COA 501 A 1 HETATM 10 N N9A COA . . . B 2 -0.751 1.252 -12.729 1 32.12 ? N9A COA 501 A 1 HETATM 11 C C1B COA . . . B 2 -0.772 2.129 -11.541 1 31.26 ? C1B COA 501 A 1 HETATM 12 C C2B COA . . . B 2 0.573 2.245 -10.842 1 31.19 ? C2B COA 501 A 1 HETATM 13 O O2B COA . . . B 2 0.795 1.146 -9.991 1 31.39 ? O2B COA 501 A 1 HETATM 14 C C3B COA . . . B 2 0.424 3.551 -10.083 1 30.88 ? C3B COA 501 A 1 HETATM 15 O O3B COA . . . B 2 -0.191 3.336 -8.832 1 31.92 ? O3B COA 501 A 1 HETATM 16 P P3B COA . . . B 2 0.619 3.069 -7.465 1 33.33 ? P3B COA 501 A 1 HETATM 17 O O7A COA . . . B 2 1.254 4.361 -7.013 1 32.99 ? O7A COA 501 A 1 HETATM 18 O O8A COA . . . B 2 1.689 2.023 -7.674 1 33.33 ? O8A COA 501 A 1 HETATM 19 O O9A COA . . . B 2 -0.358 2.585 -6.419 1 32.96 ? O9A COA 501 A 1 HETATM 20 C C4B COA . . . B 2 -0.559 4.353 -10.928 1 29.64 ? C4B COA 501 A 1 HETATM 21 O O4B COA . . . B 2 -1.143 3.455 -11.858 1 30.27 ? O4B COA 501 A 1 HETATM 22 C C5B COA . . . B 2 0.108 5.5 -11.673 1 27.74 ? C5B COA 501 A 1 HETATM 23 O O5B COA . . . B 2 0.26 6.621 -10.83 1 24.97 ? O5B COA 501 A 1 HETATM 24 P P1A COA . . . B 2 1.202 7.829 -11.327 1 23.34 ? P1A COA 501 A 1 HETATM 25 O O1A COA . . . B 2 2.649 7.404 -11.278 1 23.75 ? O1A COA 501 A 1 HETATM 26 O O2A COA . . . B 2 0.965 9.092 -10.532 1 23.71 ? O2A COA 501 A 1 HETATM 27 O O3A COA . . . B 2 0.699 8.009 -12.846 1 21.95 ? O3A COA 501 A 1 HETATM 28 P P2A COA . . . B 2 1.556 8.757 -13.98 1 21.03 ? P2A COA 501 A 1 HETATM 29 O O4A COA . . . B 2 2.637 9.598 -13.347 1 20.3 ? O4A COA 501 A 1 HETATM 30 O O5A COA . . . B 2 2.119 7.772 -14.977 1 20.9 ? O5A COA 501 A 1 HETATM 31 O O6A COA . . . B 2 0.454 9.704 -14.673 1 19.49 ? O6A COA 501 A 1 HETATM 32 C CBP COA . . . B 2 -0.98 9.606 -16.629 1 16.97 ? CBP COA 501 A 1 HETATM 33 C CCP COA . . . B 2 -0.756 9.169 -15.179 1 17.35 ? CCP COA 501 A 1 HETATM 34 C CDP COA . . . B 2 -2.31 9.016 -17.098 1 16.38 ? CDP COA 501 A 1 HETATM 35 C CEP COA . . . B 2 -1.08 11.133 -16.659 1 16.5 ? CEP COA 501 A 1 HETATM 36 C CAP COA . . . B 2 0.192 9.12 -17.5 1 16.81 ? CAP COA 501 A 1 HETATM 37 O OAP COA . . . B 2 0.459 7.743 -17.308 1 17.12 ? OAP COA 501 A 1 HETATM 38 C C9P COA . . . B 2 0.042 9.441 -18.966 1 17.13 ? C9P COA 501 A 1 HETATM 39 O O9P COA . . . B 2 0.373 10.725 -19.429 1 16.38 ? O9P COA 501 A 1 HETATM 40 N N8P COA . . . B 2 -0.4 8.473 -19.772 1 17.98 ? N8P COA 501 A 1 HETATM 41 C C7P COA . . . B 2 -0.44 8.604 -21.222 1 18.65 ? C7P COA 501 A 1 HETATM 42 C C6P COA . . . B 2 -1.588 9.484 -21.723 1 19.51 ? C6P COA 501 A 1 HETATM 43 C C5P COA . . . B 2 -2.893 9.166 -21.021 1 20.76 ? C5P COA 501 A 1 HETATM 44 O O5P COA . . . B 2 -3.224 7.992 -20.788 1 19.47 ? O5P COA 501 A 1 HETATM 45 N N4P COA . . . B 2 -3.649 10.211 -20.681 1 21.8 ? N4P COA 501 A 1 HETATM 46 C C3P COA . . . B 2 -4.848 10.066 -19.874 1 24.01 ? C3P COA 501 A 1 HETATM 47 C C2P COA . . . B 2 -6.065 9.683 -20.707 1 25.91 ? C2P COA 501 A 1 HETATM 48 S S1P COA . . . B 2 -7.573 9.596 -19.708 1 29.51 ? S1P COA 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #