data_2PRD # _model_server_result.job_id LHynhevWdPFcNjVbEHOLAA _model_server_result.datetime_utc '2025-04-12 02:48:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2prd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":175}' # _entry.id 2PRD # _exptl.entry_id 2PRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PRD _cell.length_a 110.3 _cell.length_b 110.3 _cell.length_c 82 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.15 95.522602 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -55.15 95.522602 0 4 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -55.15 31.840867 27.333333 5 'crystal symmetry operation' 11_565 x-y+2/3,-y+4/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 127.363469 27.333333 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 55.15 31.840867 27.333333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 2PRD _atom_sites.fract_transf_matrix[1][1] 0.009066 _atom_sites.fract_transf_matrix[1][2] 0.005234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 175 175 SO4 SO4 . C 3 HOH A 1 176 90 HOH HOH . C 3 HOH A 2 177 1 HOH HOH . C 3 HOH A 3 178 2 HOH HOH . C 3 HOH A 4 179 3 HOH HOH . C 3 HOH A 5 180 4 HOH HOH . C 3 HOH A 6 181 5 HOH HOH . C 3 HOH A 7 182 6 HOH HOH . C 3 HOH A 8 183 7 HOH HOH . C 3 HOH A 9 184 8 HOH HOH . C 3 HOH A 10 185 9 HOH HOH . C 3 HOH A 11 186 10 HOH HOH . C 3 HOH A 12 187 11 HOH HOH . C 3 HOH A 13 188 12 HOH HOH . C 3 HOH A 14 189 13 HOH HOH . C 3 HOH A 15 190 14 HOH HOH . C 3 HOH A 16 191 15 HOH HOH . C 3 HOH A 17 192 16 HOH HOH . C 3 HOH A 18 193 17 HOH HOH . C 3 HOH A 19 194 18 HOH HOH . C 3 HOH A 20 195 19 HOH HOH . C 3 HOH A 21 196 20 HOH HOH . C 3 HOH A 22 197 21 HOH HOH . C 3 HOH A 23 198 22 HOH HOH . C 3 HOH A 24 199 23 HOH HOH . C 3 HOH A 25 200 24 HOH HOH . C 3 HOH A 26 201 25 HOH HOH . C 3 HOH A 27 202 26 HOH HOH . C 3 HOH A 28 203 27 HOH HOH . C 3 HOH A 29 204 28 HOH HOH . C 3 HOH A 30 205 29 HOH HOH . C 3 HOH A 31 206 30 HOH HOH . C 3 HOH A 32 207 31 HOH HOH . C 3 HOH A 33 208 32 HOH HOH . C 3 HOH A 34 209 33 HOH HOH . C 3 HOH A 35 210 34 HOH HOH . C 3 HOH A 36 211 35 HOH HOH . C 3 HOH A 37 212 36 HOH HOH . C 3 HOH A 38 213 37 HOH HOH . C 3 HOH A 39 214 38 HOH HOH . C 3 HOH A 40 215 39 HOH HOH . C 3 HOH A 41 216 40 HOH HOH . C 3 HOH A 42 217 41 HOH HOH . C 3 HOH A 43 218 42 HOH HOH . C 3 HOH A 44 219 43 HOH HOH . C 3 HOH A 45 220 44 HOH HOH . C 3 HOH A 46 221 45 HOH HOH . C 3 HOH A 47 222 46 HOH HOH . C 3 HOH A 48 223 47 HOH HOH . C 3 HOH A 49 224 48 HOH HOH . C 3 HOH A 50 225 49 HOH HOH . C 3 HOH A 51 226 50 HOH HOH . C 3 HOH A 52 227 51 HOH HOH . C 3 HOH A 53 228 52 HOH HOH . C 3 HOH A 54 229 53 HOH HOH . C 3 HOH A 55 230 54 HOH HOH . C 3 HOH A 56 231 55 HOH HOH . C 3 HOH A 57 232 56 HOH HOH . C 3 HOH A 58 233 57 HOH HOH . C 3 HOH A 59 234 58 HOH HOH . C 3 HOH A 60 235 59 HOH HOH . C 3 HOH A 61 236 60 HOH HOH . C 3 HOH A 62 237 61 HOH HOH . C 3 HOH A 63 238 62 HOH HOH . C 3 HOH A 64 239 63 HOH HOH . C 3 HOH A 65 240 64 HOH HOH . C 3 HOH A 66 241 65 HOH HOH . C 3 HOH A 67 242 66 HOH HOH . C 3 HOH A 68 243 67 HOH HOH . C 3 HOH A 69 244 68 HOH HOH . C 3 HOH A 70 245 69 HOH HOH . C 3 HOH A 71 246 70 HOH HOH . C 3 HOH A 72 247 71 HOH HOH . C 3 HOH A 73 248 72 HOH HOH . C 3 HOH A 74 249 73 HOH HOH . C 3 HOH A 75 250 74 HOH HOH . C 3 HOH A 76 251 75 HOH HOH . C 3 HOH A 77 252 76 HOH HOH . C 3 HOH A 78 253 77 HOH HOH . C 3 HOH A 79 254 78 HOH HOH . C 3 HOH A 80 255 79 HOH HOH . C 3 HOH A 81 256 80 HOH HOH . C 3 HOH A 82 257 81 HOH HOH . C 3 HOH A 83 258 82 HOH HOH . C 3 HOH A 84 259 83 HOH HOH . C 3 HOH A 85 260 84 HOH HOH . C 3 HOH A 86 261 85 HOH HOH . C 3 HOH A 87 262 86 HOH HOH . C 3 HOH A 88 263 87 HOH HOH . C 3 HOH A 89 264 88 HOH HOH . C 3 HOH A 90 265 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 -10.353 45.762 -1.36 1 25.08 ? S SO4 175 A 1 HETATM 2 O O1 SO4 . . . B 2 -11.152 44.579 -1.822 1 26.08 ? O1 SO4 175 A 1 HETATM 3 O O2 SO4 . . . B 2 -10.381 45.796 0.146 1 28.78 ? O2 SO4 175 A 1 HETATM 4 O O3 SO4 . . . B 2 -8.975 45.939 -1.895 1 23.32 ? O3 SO4 175 A 1 HETATM 5 O O4 SO4 . . . B 2 -11.14 46.967 -1.866 1 37.22 ? O4 SO4 175 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #