data_2PRH # _model_server_result.job_id ICaZiUOSD9_rj7h6-DaNwg _model_server_result.datetime_utc '2024-11-04 22:41:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2prh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":398}' # _entry.id 2PRH # _exptl.entry_id 2PRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PRH _cell.length_a 90.55 _cell.length_b 90.55 _cell.length_c 122.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 156 n n N1 C10 FMN doub 157 n n C2 O2 FMN doub 158 n n C2 N3 FMN sing 159 n n N3 C4 FMN sing 160 n n N3 HN3 FMN sing 161 n n C4 O4 FMN doub 162 n n C4 C4A FMN sing 163 n n C4A N5 FMN doub 164 n n C4A C10 FMN sing 165 n n N5 C5A FMN sing 166 n n C5A C6 FMN doub 167 n y C5A C9A FMN sing 168 n y C6 C7 FMN sing 169 n y C6 H6 FMN sing 170 n n C7 C7M FMN sing 171 n n C7 C8 FMN doub 172 n y C7M HM71 FMN sing 173 n n C7M HM72 FMN sing 174 n n C7M HM73 FMN sing 175 n n C8 C8M FMN sing 176 n n C8 C9 FMN sing 177 n y C8M HM81 FMN sing 178 n n C8M HM82 FMN sing 179 n n C8M HM83 FMN sing 180 n n C9 C9A FMN doub 181 n y C9 H9 FMN sing 182 n n C9A N10 FMN sing 183 n n N10 C10 FMN sing 184 n n N10 C1' FMN sing 185 n n C1' C2' FMN sing 186 n n C1' "H1'1" FMN sing 187 n n C1' "H1'2" FMN sing 188 n n C2' O2' FMN sing 189 n n C2' C3' FMN sing 190 n n C2' H2' FMN sing 191 n n O2' HO2' FMN sing 192 n n C3' O3' FMN sing 193 n n C3' C4' FMN sing 194 n n C3' H3' FMN sing 195 n n O3' HO3' FMN sing 196 n n C4' O4' FMN sing 197 n n C4' C5' FMN sing 198 n n C4' H4' FMN sing 199 n n O4' HO4' FMN sing 200 n n C5' O5' FMN sing 201 n n C5' "H5'1" FMN sing 202 n n C5' "H5'2" FMN sing 203 n n O5' P FMN sing 204 n n P O1P FMN doub 205 n n P O2P FMN sing 206 n n P O3P FMN sing 207 n n O2P HOP2 FMN sing 208 n n O3P HOP3 FMN sing 209 n n # _atom_sites.entry_id 2PRH _atom_sites.fract_transf_matrix[1][1] 0.011044 _atom_sites.fract_transf_matrix[1][2] 0.006376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 398 398 FMN FMN . C 3 ORO A 1 399 399 ORO ORO . D 4 238 A 1 400 400 238 238 . E 5 DDQ A 1 630 630 DDQ DDQ . F 6 HOH A 1 631 401 HOH HOH . F 6 HOH A 2 632 402 HOH HOH . F 6 HOH A 3 633 403 HOH HOH . F 6 HOH A 4 634 404 HOH HOH . F 6 HOH A 5 635 405 HOH HOH . F 6 HOH A 6 636 406 HOH HOH . F 6 HOH A 7 637 407 HOH HOH . F 6 HOH A 8 638 408 HOH HOH . F 6 HOH A 9 639 409 HOH HOH . F 6 HOH A 10 640 410 HOH HOH . F 6 HOH A 11 641 411 HOH HOH . F 6 HOH A 12 642 412 HOH HOH . F 6 HOH A 13 643 413 HOH HOH . F 6 HOH A 14 644 414 HOH HOH . F 6 HOH A 15 645 415 HOH HOH . F 6 HOH A 16 646 416 HOH HOH . F 6 HOH A 17 647 417 HOH HOH . F 6 HOH A 18 648 418 HOH HOH . F 6 HOH A 19 649 419 HOH HOH . F 6 HOH A 20 650 420 HOH HOH . F 6 HOH A 21 651 421 HOH HOH . F 6 HOH A 22 652 422 HOH HOH . F 6 HOH A 23 653 423 HOH HOH . F 6 HOH A 24 654 424 HOH HOH . F 6 HOH A 25 655 425 HOH HOH . F 6 HOH A 26 656 426 HOH HOH . F 6 HOH A 27 657 427 HOH HOH . F 6 HOH A 28 658 428 HOH HOH . F 6 HOH A 29 659 429 HOH HOH . F 6 HOH A 30 660 430 HOH HOH . F 6 HOH A 31 661 431 HOH HOH . F 6 HOH A 32 662 432 HOH HOH . F 6 HOH A 33 663 433 HOH HOH . F 6 HOH A 34 664 434 HOH HOH . F 6 HOH A 35 665 435 HOH HOH . F 6 HOH A 36 666 437 HOH HOH . F 6 HOH A 37 667 438 HOH HOH . F 6 HOH A 38 668 439 HOH HOH . F 6 HOH A 39 669 440 HOH HOH . F 6 HOH A 40 670 441 HOH HOH . F 6 HOH A 41 671 442 HOH HOH . F 6 HOH A 42 672 443 HOH HOH . F 6 HOH A 43 673 444 HOH HOH . F 6 HOH A 44 674 445 HOH HOH . F 6 HOH A 45 675 446 HOH HOH . F 6 HOH A 46 676 447 HOH HOH . F 6 HOH A 47 677 448 HOH HOH . F 6 HOH A 48 678 449 HOH HOH . F 6 HOH A 49 679 450 HOH HOH . F 6 HOH A 50 680 451 HOH HOH . F 6 HOH A 51 681 452 HOH HOH . F 6 HOH A 52 682 453 HOH HOH . F 6 HOH A 53 683 454 HOH HOH . F 6 HOH A 54 684 455 HOH HOH . F 6 HOH A 55 685 456 HOH HOH . F 6 HOH A 56 686 457 HOH HOH . F 6 HOH A 57 687 458 HOH HOH . F 6 HOH A 58 688 459 HOH HOH . F 6 HOH A 59 689 460 HOH HOH . F 6 HOH A 60 690 461 HOH HOH . F 6 HOH A 61 691 462 HOH HOH . F 6 HOH A 62 692 463 HOH HOH . F 6 HOH A 63 693 464 HOH HOH . F 6 HOH A 64 694 465 HOH HOH . F 6 HOH A 65 695 466 HOH HOH . F 6 HOH A 66 696 467 HOH HOH . F 6 HOH A 67 697 468 HOH HOH . F 6 HOH A 68 698 470 HOH HOH . F 6 HOH A 69 699 471 HOH HOH . F 6 HOH A 70 700 472 HOH HOH . F 6 HOH A 71 701 473 HOH HOH . F 6 HOH A 72 702 474 HOH HOH . F 6 HOH A 73 703 475 HOH HOH . F 6 HOH A 74 704 476 HOH HOH . F 6 HOH A 75 705 477 HOH HOH . F 6 HOH A 76 706 478 HOH HOH . F 6 HOH A 77 707 479 HOH HOH . F 6 HOH A 78 708 480 HOH HOH . F 6 HOH A 79 709 481 HOH HOH . F 6 HOH A 80 710 482 HOH HOH . F 6 HOH A 81 711 483 HOH HOH . F 6 HOH A 82 712 484 HOH HOH . F 6 HOH A 83 713 485 HOH HOH . F 6 HOH A 84 714 486 HOH HOH . F 6 HOH A 85 715 487 HOH HOH . F 6 HOH A 86 716 488 HOH HOH . F 6 HOH A 87 717 489 HOH HOH . F 6 HOH A 88 718 490 HOH HOH . F 6 HOH A 89 719 491 HOH HOH . F 6 HOH A 90 720 492 HOH HOH . F 6 HOH A 91 721 493 HOH HOH . F 6 HOH A 92 722 494 HOH HOH . F 6 HOH A 93 723 495 HOH HOH . F 6 HOH A 94 724 496 HOH HOH . F 6 HOH A 95 725 497 HOH HOH . F 6 HOH A 96 726 498 HOH HOH . F 6 HOH A 97 727 499 HOH HOH . F 6 HOH A 98 728 500 HOH HOH . F 6 HOH A 99 729 501 HOH HOH . F 6 HOH A 100 730 502 HOH HOH . F 6 HOH A 101 731 503 HOH HOH . F 6 HOH A 102 732 504 HOH HOH . F 6 HOH A 103 733 505 HOH HOH . F 6 HOH A 104 734 506 HOH HOH . F 6 HOH A 105 735 507 HOH HOH . F 6 HOH A 106 736 508 HOH HOH . F 6 HOH A 107 737 509 HOH HOH . F 6 HOH A 108 738 510 HOH HOH . F 6 HOH A 109 739 511 HOH HOH . F 6 HOH A 110 740 512 HOH HOH . F 6 HOH A 111 741 513 HOH HOH . F 6 HOH A 112 742 514 HOH HOH . F 6 HOH A 113 743 515 HOH HOH . F 6 HOH A 114 744 516 HOH HOH . F 6 HOH A 115 745 517 HOH HOH . F 6 HOH A 116 746 518 HOH HOH . F 6 HOH A 117 747 519 HOH HOH . F 6 HOH A 118 748 520 HOH HOH . F 6 HOH A 119 749 521 HOH HOH . F 6 HOH A 120 750 522 HOH HOH . F 6 HOH A 121 751 523 HOH HOH . F 6 HOH A 122 752 524 HOH HOH . F 6 HOH A 123 753 525 HOH HOH . F 6 HOH A 124 754 526 HOH HOH . F 6 HOH A 125 755 527 HOH HOH . F 6 HOH A 126 756 528 HOH HOH . F 6 HOH A 127 757 529 HOH HOH . F 6 HOH A 128 758 530 HOH HOH . F 6 HOH A 129 759 531 HOH HOH . F 6 HOH A 130 760 532 HOH HOH . F 6 HOH A 131 761 533 HOH HOH . F 6 HOH A 132 762 534 HOH HOH . F 6 HOH A 133 763 535 HOH HOH . F 6 HOH A 134 764 536 HOH HOH . F 6 HOH A 135 765 537 HOH HOH . F 6 HOH A 136 766 538 HOH HOH . F 6 HOH A 137 767 539 HOH HOH . F 6 HOH A 138 768 540 HOH HOH . F 6 HOH A 139 769 541 HOH HOH . F 6 HOH A 140 770 542 HOH HOH . F 6 HOH A 141 771 543 HOH HOH . F 6 HOH A 142 772 544 HOH HOH . F 6 HOH A 143 773 545 HOH HOH . F 6 HOH A 144 774 546 HOH HOH . F 6 HOH A 145 775 547 HOH HOH . F 6 HOH A 146 776 548 HOH HOH . F 6 HOH A 147 777 549 HOH HOH . F 6 HOH A 148 778 550 HOH HOH . F 6 HOH A 149 779 551 HOH HOH . F 6 HOH A 150 780 552 HOH HOH . F 6 HOH A 151 781 553 HOH HOH . F 6 HOH A 152 782 554 HOH HOH . F 6 HOH A 153 783 555 HOH HOH . F 6 HOH A 154 784 556 HOH HOH . F 6 HOH A 155 785 557 HOH HOH . F 6 HOH A 156 786 558 HOH HOH . F 6 HOH A 157 787 559 HOH HOH . F 6 HOH A 158 788 560 HOH HOH . F 6 HOH A 159 789 561 HOH HOH . F 6 HOH A 160 790 562 HOH HOH . F 6 HOH A 161 791 563 HOH HOH . F 6 HOH A 162 792 564 HOH HOH . F 6 HOH A 163 793 565 HOH HOH . F 6 HOH A 164 794 566 HOH HOH . F 6 HOH A 165 795 567 HOH HOH . F 6 HOH A 166 796 568 HOH HOH . F 6 HOH A 167 797 569 HOH HOH . F 6 HOH A 168 798 570 HOH HOH . F 6 HOH A 169 799 571 HOH HOH . F 6 HOH A 170 800 572 HOH HOH . F 6 HOH A 171 801 573 HOH HOH . F 6 HOH A 172 802 574 HOH HOH . F 6 HOH A 173 803 575 HOH HOH . F 6 HOH A 174 804 576 HOH HOH . F 6 HOH A 175 805 577 HOH HOH . F 6 HOH A 176 806 579 HOH HOH . F 6 HOH A 177 807 580 HOH HOH . F 6 HOH A 178 808 581 HOH HOH . F 6 HOH A 179 809 582 HOH HOH . F 6 HOH A 180 810 583 HOH HOH . F 6 HOH A 181 811 584 HOH HOH . F 6 HOH A 182 812 585 HOH HOH . F 6 HOH A 183 813 586 HOH HOH . F 6 HOH A 184 814 587 HOH HOH . F 6 HOH A 185 815 588 HOH HOH . F 6 HOH A 186 816 589 HOH HOH . F 6 HOH A 187 817 590 HOH HOH . F 6 HOH A 188 818 591 HOH HOH . F 6 HOH A 189 819 592 HOH HOH . F 6 HOH A 190 820 593 HOH HOH . F 6 HOH A 191 821 594 HOH HOH . F 6 HOH A 192 822 595 HOH HOH . F 6 HOH A 193 823 596 HOH HOH . F 6 HOH A 194 824 597 HOH HOH . F 6 HOH A 195 825 598 HOH HOH . F 6 HOH A 196 826 599 HOH HOH . F 6 HOH A 197 827 600 HOH HOH . F 6 HOH A 198 828 601 HOH HOH . F 6 HOH A 199 829 602 HOH HOH . F 6 HOH A 200 830 603 HOH HOH . F 6 HOH A 201 831 604 HOH HOH . F 6 HOH A 202 832 605 HOH HOH . F 6 HOH A 203 833 606 HOH HOH . F 6 HOH A 204 834 607 HOH HOH . F 6 HOH A 205 835 608 HOH HOH . F 6 HOH A 206 836 610 HOH HOH . F 6 HOH A 207 837 611 HOH HOH . F 6 HOH A 208 838 612 HOH HOH . F 6 HOH A 209 839 613 HOH HOH . F 6 HOH A 210 840 614 HOH HOH . F 6 HOH A 211 841 615 HOH HOH . F 6 HOH A 212 842 616 HOH HOH . F 6 HOH A 213 843 617 HOH HOH . F 6 HOH A 214 844 618 HOH HOH . F 6 HOH A 215 845 619 HOH HOH . F 6 HOH A 216 846 620 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 41.802 36.214 8.613 1 7.87 ? N1 FMN 398 A 1 HETATM 2 C C2 FMN . . . B 2 42.171 35.516 9.741 1 8.66 ? C2 FMN 398 A 1 HETATM 3 O O2 FMN . . . B 2 41.536 35.694 10.794 1 8.35 ? O2 FMN 398 A 1 HETATM 4 N N3 FMN . . . B 2 43.246 34.636 9.675 1 8.65 ? N3 FMN 398 A 1 HETATM 5 C C4 FMN . . . B 2 43.949 34.451 8.498 1 9.26 ? C4 FMN 398 A 1 HETATM 6 O O4 FMN . . . B 2 45.063 33.912 8.545 1 11.13 ? O4 FMN 398 A 1 HETATM 7 C C4A FMN . . . B 2 43.565 35.157 7.347 1 8.77 ? C4A FMN 398 A 1 HETATM 8 N N5 FMN . . . B 2 44.245 35.009 6.144 1 8.1 ? N5 FMN 398 A 1 HETATM 9 C C5A FMN . . . B 2 43.846 35.722 5.022 1 8.41 ? C5A FMN 398 A 1 HETATM 10 C C6 FMN . . . B 2 44.527 35.563 3.823 1 7.84 ? C6 FMN 398 A 1 HETATM 11 C C7 FMN . . . B 2 44.148 36.296 2.696 1 8.75 ? C7 FMN 398 A 1 HETATM 12 C C7M FMN . . . B 2 45.126 36.361 1.542 1 8.57 ? C7M FMN 398 A 1 HETATM 13 C C8 FMN . . . B 2 43.055 37.189 2.764 1 8.51 ? C8 FMN 398 A 1 HETATM 14 C C8M FMN . . . B 2 42.796 38.198 1.67 1 8.24 ? C8M FMN 398 A 1 HETATM 15 C C9 FMN . . . B 2 42.37 37.344 3.964 1 8.16 ? C9 FMN 398 A 1 HETATM 16 C C9A FMN . . . B 2 42.76 36.615 5.098 1 8.93 ? C9A FMN 398 A 1 HETATM 17 N N10 FMN . . . B 2 42.086 36.762 6.309 1 9.08 ? N10 FMN 398 A 1 HETATM 18 C C10 FMN . . . B 2 42.488 36.043 7.425 1 8.8 ? C10 FMN 398 A 1 HETATM 19 C C1' FMN . . . B 2 40.821 37.565 6.432 1 9.15 ? C1' FMN 398 A 1 HETATM 20 C C2' FMN . . . B 2 41.126 39.04 6.697 1 10.02 ? C2' FMN 398 A 1 HETATM 21 O O2' FMN . . . B 2 41.796 39.213 7.931 1 9.96 ? O2' FMN 398 A 1 HETATM 22 C C3' FMN . . . B 2 39.834 39.857 6.71 1 10.37 ? C3' FMN 398 A 1 HETATM 23 O O3' FMN . . . B 2 39.007 39.383 7.762 1 8.38 ? O3' FMN 398 A 1 HETATM 24 C C4' FMN . . . B 2 39.111 39.79 5.356 1 10.19 ? C4' FMN 398 A 1 HETATM 25 O O4' FMN . . . B 2 40.033 39.677 4.282 1 11.4 ? O4' FMN 398 A 1 HETATM 26 C C5' FMN . . . B 2 38.227 41.009 5.137 1 9.34 ? C5' FMN 398 A 1 HETATM 27 O O5' FMN . . . B 2 39.017 42.174 5.084 1 8.6 ? O5' FMN 398 A 1 HETATM 28 P P FMN . . . B 2 39.426 42.85 3.688 1 9.58 ? P FMN 398 A 1 HETATM 29 O O1P FMN . . . B 2 40.479 41.985 3.021 1 8.68 ? O1P FMN 398 A 1 HETATM 30 O O2P FMN . . . B 2 39.942 44.236 3.991 1 6.24 ? O2P FMN 398 A 1 HETATM 31 O O3P FMN . . . B 2 38.233 42.899 2.753 1 9.73 ? O3P FMN 398 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #