data_2PRL # _model_server_result.job_id pQKZDX66NicexnCa-glfYg _model_server_result.datetime_utc '2024-11-08 16:30:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2prl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":398}' # _entry.id 2PRL # _exptl.entry_id 2PRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PRL _cell.length_a 90.41 _cell.length_b 90.41 _cell.length_c 122.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 116 n n N1 C10 FMN doub 117 n n C2 O2 FMN doub 118 n n C2 N3 FMN sing 119 n n N3 C4 FMN sing 120 n n N3 HN3 FMN sing 121 n n C4 O4 FMN doub 122 n n C4 C4A FMN sing 123 n n C4A N5 FMN doub 124 n n C4A C10 FMN sing 125 n n N5 C5A FMN sing 126 n n C5A C6 FMN doub 127 n y C5A C9A FMN sing 128 n y C6 C7 FMN sing 129 n y C6 H6 FMN sing 130 n n C7 C7M FMN sing 131 n n C7 C8 FMN doub 132 n y C7M HM71 FMN sing 133 n n C7M HM72 FMN sing 134 n n C7M HM73 FMN sing 135 n n C8 C8M FMN sing 136 n n C8 C9 FMN sing 137 n y C8M HM81 FMN sing 138 n n C8M HM82 FMN sing 139 n n C8M HM83 FMN sing 140 n n C9 C9A FMN doub 141 n y C9 H9 FMN sing 142 n n C9A N10 FMN sing 143 n n N10 C10 FMN sing 144 n n N10 C1' FMN sing 145 n n C1' C2' FMN sing 146 n n C1' "H1'1" FMN sing 147 n n C1' "H1'2" FMN sing 148 n n C2' O2' FMN sing 149 n n C2' C3' FMN sing 150 n n C2' H2' FMN sing 151 n n O2' HO2' FMN sing 152 n n C3' O3' FMN sing 153 n n C3' C4' FMN sing 154 n n C3' H3' FMN sing 155 n n O3' HO3' FMN sing 156 n n C4' O4' FMN sing 157 n n C4' C5' FMN sing 158 n n C4' H4' FMN sing 159 n n O4' HO4' FMN sing 160 n n C5' O5' FMN sing 161 n n C5' "H5'1" FMN sing 162 n n C5' "H5'2" FMN sing 163 n n O5' P FMN sing 164 n n P O1P FMN doub 165 n n P O2P FMN sing 166 n n P O3P FMN sing 167 n n O2P HOP2 FMN sing 168 n n O3P HOP3 FMN sing 169 n n # _atom_sites.entry_id 2PRL _atom_sites.fract_transf_matrix[1][1] 0.011061 _atom_sites.fract_transf_matrix[1][2] 0.006386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 3 ACT A 1 402 402 ACT ACT . D 3 ACT A 1 403 403 ACT ACT . E 4 FMN A 1 398 398 FMN FMN . F 5 ORO A 1 399 399 ORO ORO . G 6 R2C A 1 400 400 R2C R2C . H 7 DDQ A 1 700 700 DDQ DDQ . I 8 HOH A 1 701 404 HOH HOH . I 8 HOH A 2 702 405 HOH HOH . I 8 HOH A 3 703 406 HOH HOH . I 8 HOH A 4 704 407 HOH HOH . I 8 HOH A 5 705 408 HOH HOH . I 8 HOH A 6 706 409 HOH HOH . I 8 HOH A 7 707 410 HOH HOH . I 8 HOH A 8 708 411 HOH HOH . I 8 HOH A 9 709 412 HOH HOH . I 8 HOH A 10 710 413 HOH HOH . I 8 HOH A 11 711 414 HOH HOH . I 8 HOH A 12 712 415 HOH HOH . I 8 HOH A 13 713 416 HOH HOH . I 8 HOH A 14 714 417 HOH HOH . I 8 HOH A 15 715 418 HOH HOH . I 8 HOH A 16 716 419 HOH HOH . I 8 HOH A 17 717 420 HOH HOH . I 8 HOH A 18 718 421 HOH HOH . I 8 HOH A 19 719 422 HOH HOH . I 8 HOH A 20 720 423 HOH HOH . I 8 HOH A 21 721 424 HOH HOH . I 8 HOH A 22 722 425 HOH HOH . I 8 HOH A 23 723 426 HOH HOH . I 8 HOH A 24 724 427 HOH HOH . I 8 HOH A 25 725 428 HOH HOH . I 8 HOH A 26 726 429 HOH HOH . I 8 HOH A 27 727 430 HOH HOH . I 8 HOH A 28 728 431 HOH HOH . I 8 HOH A 29 729 432 HOH HOH . I 8 HOH A 30 730 433 HOH HOH . I 8 HOH A 31 731 434 HOH HOH . I 8 HOH A 32 732 435 HOH HOH . I 8 HOH A 33 733 436 HOH HOH . I 8 HOH A 34 734 437 HOH HOH . I 8 HOH A 35 735 438 HOH HOH . I 8 HOH A 36 736 439 HOH HOH . I 8 HOH A 37 737 440 HOH HOH . I 8 HOH A 38 738 441 HOH HOH . I 8 HOH A 39 739 442 HOH HOH . I 8 HOH A 40 740 443 HOH HOH . I 8 HOH A 41 741 444 HOH HOH . I 8 HOH A 42 742 445 HOH HOH . I 8 HOH A 43 743 446 HOH HOH . I 8 HOH A 44 744 447 HOH HOH . I 8 HOH A 45 745 448 HOH HOH . I 8 HOH A 46 746 449 HOH HOH . I 8 HOH A 47 747 450 HOH HOH . I 8 HOH A 48 748 451 HOH HOH . I 8 HOH A 49 749 452 HOH HOH . I 8 HOH A 50 750 453 HOH HOH . I 8 HOH A 51 751 454 HOH HOH . I 8 HOH A 52 752 455 HOH HOH . I 8 HOH A 53 753 456 HOH HOH . I 8 HOH A 54 754 457 HOH HOH . I 8 HOH A 55 755 458 HOH HOH . I 8 HOH A 56 756 459 HOH HOH . I 8 HOH A 57 757 460 HOH HOH . I 8 HOH A 58 758 461 HOH HOH . I 8 HOH A 59 759 462 HOH HOH . I 8 HOH A 60 760 463 HOH HOH . I 8 HOH A 61 761 464 HOH HOH . I 8 HOH A 62 762 465 HOH HOH . I 8 HOH A 63 763 466 HOH HOH . I 8 HOH A 64 764 467 HOH HOH . I 8 HOH A 65 765 468 HOH HOH . I 8 HOH A 66 766 469 HOH HOH . I 8 HOH A 67 767 470 HOH HOH . I 8 HOH A 68 768 471 HOH HOH . I 8 HOH A 69 769 472 HOH HOH . I 8 HOH A 70 770 473 HOH HOH . I 8 HOH A 71 771 474 HOH HOH . I 8 HOH A 72 772 475 HOH HOH . I 8 HOH A 73 773 476 HOH HOH . I 8 HOH A 74 774 477 HOH HOH . I 8 HOH A 75 775 478 HOH HOH . I 8 HOH A 76 776 479 HOH HOH . I 8 HOH A 77 777 480 HOH HOH . I 8 HOH A 78 778 481 HOH HOH . I 8 HOH A 79 779 482 HOH HOH . I 8 HOH A 80 780 483 HOH HOH . I 8 HOH A 81 781 484 HOH HOH . I 8 HOH A 82 782 485 HOH HOH . I 8 HOH A 83 783 486 HOH HOH . I 8 HOH A 84 784 487 HOH HOH . I 8 HOH A 85 785 488 HOH HOH . I 8 HOH A 86 786 489 HOH HOH . I 8 HOH A 87 787 490 HOH HOH . I 8 HOH A 88 788 491 HOH HOH . I 8 HOH A 89 789 492 HOH HOH . I 8 HOH A 90 790 493 HOH HOH . I 8 HOH A 91 791 494 HOH HOH . I 8 HOH A 92 792 495 HOH HOH . I 8 HOH A 93 793 496 HOH HOH . I 8 HOH A 94 794 497 HOH HOH . I 8 HOH A 95 795 498 HOH HOH . I 8 HOH A 96 796 499 HOH HOH . I 8 HOH A 97 797 500 HOH HOH . I 8 HOH A 98 798 501 HOH HOH . I 8 HOH A 99 799 502 HOH HOH . I 8 HOH A 100 800 503 HOH HOH . I 8 HOH A 101 801 504 HOH HOH . I 8 HOH A 102 802 505 HOH HOH . I 8 HOH A 103 803 506 HOH HOH . I 8 HOH A 104 804 507 HOH HOH . I 8 HOH A 105 805 508 HOH HOH . I 8 HOH A 106 806 509 HOH HOH . I 8 HOH A 107 807 510 HOH HOH . I 8 HOH A 108 808 511 HOH HOH . I 8 HOH A 109 809 512 HOH HOH . I 8 HOH A 110 810 513 HOH HOH . I 8 HOH A 111 811 514 HOH HOH . I 8 HOH A 112 812 515 HOH HOH . I 8 HOH A 113 813 516 HOH HOH . I 8 HOH A 114 814 517 HOH HOH . I 8 HOH A 115 815 518 HOH HOH . I 8 HOH A 116 816 519 HOH HOH . I 8 HOH A 117 817 520 HOH HOH . I 8 HOH A 118 818 521 HOH HOH . I 8 HOH A 119 819 522 HOH HOH . I 8 HOH A 120 820 523 HOH HOH . I 8 HOH A 121 821 524 HOH HOH . I 8 HOH A 122 822 525 HOH HOH . I 8 HOH A 123 823 526 HOH HOH . I 8 HOH A 124 824 527 HOH HOH . I 8 HOH A 125 825 528 HOH HOH . I 8 HOH A 126 826 529 HOH HOH . I 8 HOH A 127 827 530 HOH HOH . I 8 HOH A 128 828 531 HOH HOH . I 8 HOH A 129 829 532 HOH HOH . I 8 HOH A 130 830 533 HOH HOH . I 8 HOH A 131 831 534 HOH HOH . I 8 HOH A 132 832 535 HOH HOH . I 8 HOH A 133 833 536 HOH HOH . I 8 HOH A 134 834 537 HOH HOH . I 8 HOH A 135 835 538 HOH HOH . I 8 HOH A 136 836 539 HOH HOH . I 8 HOH A 137 837 540 HOH HOH . I 8 HOH A 138 838 541 HOH HOH . I 8 HOH A 139 839 542 HOH HOH . I 8 HOH A 140 840 543 HOH HOH . I 8 HOH A 141 841 544 HOH HOH . I 8 HOH A 142 842 545 HOH HOH . I 8 HOH A 143 843 546 HOH HOH . I 8 HOH A 144 844 547 HOH HOH . I 8 HOH A 145 845 548 HOH HOH . I 8 HOH A 146 846 549 HOH HOH . I 8 HOH A 147 847 550 HOH HOH . I 8 HOH A 148 848 552 HOH HOH . I 8 HOH A 149 849 553 HOH HOH . I 8 HOH A 150 850 554 HOH HOH . I 8 HOH A 151 851 555 HOH HOH . I 8 HOH A 152 852 556 HOH HOH . I 8 HOH A 153 853 557 HOH HOH . I 8 HOH A 154 854 558 HOH HOH . I 8 HOH A 155 855 559 HOH HOH . I 8 HOH A 156 856 560 HOH HOH . I 8 HOH A 157 857 561 HOH HOH . I 8 HOH A 158 858 562 HOH HOH . I 8 HOH A 159 859 563 HOH HOH . I 8 HOH A 160 860 564 HOH HOH . I 8 HOH A 161 861 565 HOH HOH . I 8 HOH A 162 862 566 HOH HOH . I 8 HOH A 163 863 567 HOH HOH . I 8 HOH A 164 864 568 HOH HOH . I 8 HOH A 165 865 569 HOH HOH . I 8 HOH A 166 866 570 HOH HOH . I 8 HOH A 167 867 571 HOH HOH . I 8 HOH A 168 868 572 HOH HOH . I 8 HOH A 169 869 573 HOH HOH . I 8 HOH A 170 870 574 HOH HOH . I 8 HOH A 171 871 575 HOH HOH . I 8 HOH A 172 872 576 HOH HOH . I 8 HOH A 173 873 577 HOH HOH . I 8 HOH A 174 874 578 HOH HOH . I 8 HOH A 175 875 579 HOH HOH . I 8 HOH A 176 876 580 HOH HOH . I 8 HOH A 177 877 581 HOH HOH . I 8 HOH A 178 878 582 HOH HOH . I 8 HOH A 179 879 583 HOH HOH . I 8 HOH A 180 880 584 HOH HOH . I 8 HOH A 181 881 585 HOH HOH . I 8 HOH A 182 882 586 HOH HOH . I 8 HOH A 183 883 587 HOH HOH . I 8 HOH A 184 884 588 HOH HOH . I 8 HOH A 185 885 589 HOH HOH . I 8 HOH A 186 886 590 HOH HOH . I 8 HOH A 187 887 591 HOH HOH . I 8 HOH A 188 888 592 HOH HOH . I 8 HOH A 189 889 594 HOH HOH . I 8 HOH A 190 890 595 HOH HOH . I 8 HOH A 191 891 596 HOH HOH . I 8 HOH A 192 892 597 HOH HOH . I 8 HOH A 193 893 598 HOH HOH . I 8 HOH A 194 894 599 HOH HOH . I 8 HOH A 195 895 600 HOH HOH . I 8 HOH A 196 896 601 HOH HOH . I 8 HOH A 197 897 602 HOH HOH . I 8 HOH A 198 898 603 HOH HOH . I 8 HOH A 199 899 604 HOH HOH . I 8 HOH A 200 900 605 HOH HOH . I 8 HOH A 201 901 606 HOH HOH . I 8 HOH A 202 902 607 HOH HOH . I 8 HOH A 203 903 608 HOH HOH . I 8 HOH A 204 904 609 HOH HOH . I 8 HOH A 205 905 610 HOH HOH . I 8 HOH A 206 906 611 HOH HOH . I 8 HOH A 207 907 612 HOH HOH . I 8 HOH A 208 908 613 HOH HOH . I 8 HOH A 209 909 614 HOH HOH . I 8 HOH A 210 910 615 HOH HOH . I 8 HOH A 211 911 616 HOH HOH . I 8 HOH A 212 912 617 HOH HOH . I 8 HOH A 213 913 618 HOH HOH . I 8 HOH A 214 914 619 HOH HOH . I 8 HOH A 215 915 620 HOH HOH . I 8 HOH A 216 916 621 HOH HOH . I 8 HOH A 217 917 622 HOH HOH . I 8 HOH A 218 918 623 HOH HOH . I 8 HOH A 219 919 624 HOH HOH . I 8 HOH A 220 920 625 HOH HOH . I 8 HOH A 221 921 626 HOH HOH . I 8 HOH A 222 922 627 HOH HOH . I 8 HOH A 223 923 628 HOH HOH . I 8 HOH A 224 924 629 HOH HOH . I 8 HOH A 225 925 630 HOH HOH . I 8 HOH A 226 926 631 HOH HOH . I 8 HOH A 227 927 632 HOH HOH . I 8 HOH A 228 928 633 HOH HOH . I 8 HOH A 229 929 634 HOH HOH . I 8 HOH A 230 930 635 HOH HOH . I 8 HOH A 231 931 636 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 4 41.797 36.157 8.585 1 2 ? N1 FMN 398 A 1 HETATM 2 C C2 FMN . . . E 4 42.192 35.455 9.701 1 2 ? C2 FMN 398 A 1 HETATM 3 O O2 FMN . . . E 4 41.581 35.595 10.768 1 2.19 ? O2 FMN 398 A 1 HETATM 4 N N3 FMN . . . E 4 43.268 34.593 9.613 1 2 ? N3 FMN 398 A 1 HETATM 5 C C4 FMN . . . E 4 43.95 34.43 8.421 1 2 ? C4 FMN 398 A 1 HETATM 6 O O4 FMN . . . E 4 44.987 33.774 8.413 1 2.4 ? O4 FMN 398 A 1 HETATM 7 C C4A FMN . . . E 4 43.554 35.138 7.287 1 2 ? C4A FMN 398 A 1 HETATM 8 N N5 FMN . . . E 4 44.215 34.983 6.078 1 2 ? N5 FMN 398 A 1 HETATM 9 C C5A FMN . . . E 4 43.821 35.699 4.962 1 2 ? C5A FMN 398 A 1 HETATM 10 C C6 FMN . . . E 4 44.502 35.557 3.746 1 2 ? C6 FMN 398 A 1 HETATM 11 C C7 FMN . . . E 4 44.09 36.29 2.625 1 2 ? C7 FMN 398 A 1 HETATM 12 C C7M FMN . . . E 4 44.957 36.269 1.394 1 2.57 ? C7M FMN 398 A 1 HETATM 13 C C8 FMN . . . E 4 43.001 37.168 2.726 1 2 ? C8 FMN 398 A 1 HETATM 14 C C8M FMN . . . E 4 42.641 38.148 1.638 1 2.07 ? C8M FMN 398 A 1 HETATM 15 C C9 FMN . . . E 4 42.341 37.302 3.941 1 2 ? C9 FMN 398 A 1 HETATM 16 C C9A FMN . . . E 4 42.74 36.579 5.062 1 2.01 ? C9A FMN 398 A 1 HETATM 17 N N10 FMN . . . E 4 42.063 36.72 6.277 1 2.46 ? N10 FMN 398 A 1 HETATM 18 C C10 FMN . . . E 4 42.468 36.004 7.382 1 2 ? C10 FMN 398 A 1 HETATM 19 C C1' FMN . . . E 4 40.797 37.519 6.369 1 2.57 ? C1' FMN 398 A 1 HETATM 20 C C2' FMN . . . E 4 41.119 39.004 6.598 1 3.43 ? C2' FMN 398 A 1 HETATM 21 O O2' FMN . . . E 4 41.752 39.173 7.85 1 2.7 ? O2' FMN 398 A 1 HETATM 22 C C3' FMN . . . E 4 39.841 39.853 6.554 1 4.2 ? C3' FMN 398 A 1 HETATM 23 O O3' FMN . . . E 4 38.981 39.425 7.591 1 3.23 ? O3' FMN 398 A 1 HETATM 24 C C4' FMN . . . E 4 39.098 39.743 5.214 1 3.87 ? C4' FMN 398 A 1 HETATM 25 O O4' FMN . . . E 4 40.02 39.647 4.158 1 3.63 ? O4' FMN 398 A 1 HETATM 26 C C5' FMN . . . E 4 38.184 40.934 4.94 1 4.12 ? C5' FMN 398 A 1 HETATM 27 O O5' FMN . . . E 4 38.949 42.11 4.903 1 3.48 ? O5' FMN 398 A 1 HETATM 28 P P FMN . . . E 4 39.378 42.808 3.515 1 3.54 ? P FMN 398 A 1 HETATM 29 O O1P FMN . . . E 4 40.48 41.996 2.88 1 3.77 ? O1P FMN 398 A 1 HETATM 30 O O2P FMN . . . E 4 39.869 44.184 3.843 1 2.38 ? O2P FMN 398 A 1 HETATM 31 O O3P FMN . . . E 4 38.188 42.882 2.585 1 2.41 ? O3P FMN 398 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #