data_2PRL # _model_server_result.job_id 1ycL4ELnLWxk4iD66SL4ig _model_server_result.datetime_utc '2024-11-23 11:33:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2prl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":700}' # _entry.id 2PRL # _exptl.entry_id 2PRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.349 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECYLAMINE-N,N-DIMETHYL-N-OXIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PRL _cell.length_a 90.41 _cell.length_b 90.41 _cell.length_c 122.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H27 N O' _chem_comp.formula_weight 201.349 _chem_comp.id DDQ _chem_comp.mon_nstd_flag . _chem_comp.name DECYLAMINE-N,N-DIMETHYL-N-OXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 DDQ sing 76 n n N1 CM1 DDQ sing 77 n n N1 CM2 DDQ sing 78 n n N1 C1 DDQ sing 79 n n CM1 HM11 DDQ sing 80 n n CM1 HM12 DDQ sing 81 n n CM1 HM13 DDQ sing 82 n n CM2 HM21 DDQ sing 83 n n CM2 HM22 DDQ sing 84 n n CM2 HM23 DDQ sing 85 n n C1 C2 DDQ sing 86 n n C1 H11 DDQ sing 87 n n C1 H12 DDQ sing 88 n n C2 C3 DDQ sing 89 n n C2 H21 DDQ sing 90 n n C2 H22 DDQ sing 91 n n C3 C4 DDQ sing 92 n n C3 H31 DDQ sing 93 n n C3 H32 DDQ sing 94 n n C4 C5 DDQ sing 95 n n C4 H41 DDQ sing 96 n n C4 H42 DDQ sing 97 n n C5 C6 DDQ sing 98 n n C5 H51 DDQ sing 99 n n C5 H52 DDQ sing 100 n n C6 C7 DDQ sing 101 n n C6 H61 DDQ sing 102 n n C6 H62 DDQ sing 103 n n C7 C8 DDQ sing 104 n n C7 H71 DDQ sing 105 n n C7 H72 DDQ sing 106 n n C8 C9 DDQ sing 107 n n C8 H81 DDQ sing 108 n n C8 H82 DDQ sing 109 n n C9 C10 DDQ sing 110 n n C9 H91 DDQ sing 111 n n C9 H92 DDQ sing 112 n n C10 H101 DDQ sing 113 n n C10 H102 DDQ sing 114 n n C10 H103 DDQ sing 115 n n # _atom_sites.entry_id 2PRL _atom_sites.fract_transf_matrix[1][1] 0.011061 _atom_sites.fract_transf_matrix[1][2] 0.006386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 3 ACT A 1 402 402 ACT ACT . D 3 ACT A 1 403 403 ACT ACT . E 4 FMN A 1 398 398 FMN FMN . F 5 ORO A 1 399 399 ORO ORO . G 6 R2C A 1 400 400 R2C R2C . H 7 DDQ A 1 700 700 DDQ DDQ . I 8 HOH A 1 701 404 HOH HOH . I 8 HOH A 2 702 405 HOH HOH . I 8 HOH A 3 703 406 HOH HOH . I 8 HOH A 4 704 407 HOH HOH . I 8 HOH A 5 705 408 HOH HOH . I 8 HOH A 6 706 409 HOH HOH . I 8 HOH A 7 707 410 HOH HOH . I 8 HOH A 8 708 411 HOH HOH . I 8 HOH A 9 709 412 HOH HOH . I 8 HOH A 10 710 413 HOH HOH . I 8 HOH A 11 711 414 HOH HOH . I 8 HOH A 12 712 415 HOH HOH . I 8 HOH A 13 713 416 HOH HOH . I 8 HOH A 14 714 417 HOH HOH . I 8 HOH A 15 715 418 HOH HOH . I 8 HOH A 16 716 419 HOH HOH . I 8 HOH A 17 717 420 HOH HOH . I 8 HOH A 18 718 421 HOH HOH . I 8 HOH A 19 719 422 HOH HOH . I 8 HOH A 20 720 423 HOH HOH . I 8 HOH A 21 721 424 HOH HOH . I 8 HOH A 22 722 425 HOH HOH . I 8 HOH A 23 723 426 HOH HOH . I 8 HOH A 24 724 427 HOH HOH . I 8 HOH A 25 725 428 HOH HOH . I 8 HOH A 26 726 429 HOH HOH . I 8 HOH A 27 727 430 HOH HOH . I 8 HOH A 28 728 431 HOH HOH . I 8 HOH A 29 729 432 HOH HOH . I 8 HOH A 30 730 433 HOH HOH . I 8 HOH A 31 731 434 HOH HOH . I 8 HOH A 32 732 435 HOH HOH . I 8 HOH A 33 733 436 HOH HOH . I 8 HOH A 34 734 437 HOH HOH . I 8 HOH A 35 735 438 HOH HOH . I 8 HOH A 36 736 439 HOH HOH . I 8 HOH A 37 737 440 HOH HOH . I 8 HOH A 38 738 441 HOH HOH . I 8 HOH A 39 739 442 HOH HOH . I 8 HOH A 40 740 443 HOH HOH . I 8 HOH A 41 741 444 HOH HOH . I 8 HOH A 42 742 445 HOH HOH . I 8 HOH A 43 743 446 HOH HOH . I 8 HOH A 44 744 447 HOH HOH . I 8 HOH A 45 745 448 HOH HOH . I 8 HOH A 46 746 449 HOH HOH . I 8 HOH A 47 747 450 HOH HOH . I 8 HOH A 48 748 451 HOH HOH . I 8 HOH A 49 749 452 HOH HOH . I 8 HOH A 50 750 453 HOH HOH . I 8 HOH A 51 751 454 HOH HOH . I 8 HOH A 52 752 455 HOH HOH . I 8 HOH A 53 753 456 HOH HOH . I 8 HOH A 54 754 457 HOH HOH . I 8 HOH A 55 755 458 HOH HOH . I 8 HOH A 56 756 459 HOH HOH . I 8 HOH A 57 757 460 HOH HOH . I 8 HOH A 58 758 461 HOH HOH . I 8 HOH A 59 759 462 HOH HOH . I 8 HOH A 60 760 463 HOH HOH . I 8 HOH A 61 761 464 HOH HOH . I 8 HOH A 62 762 465 HOH HOH . I 8 HOH A 63 763 466 HOH HOH . I 8 HOH A 64 764 467 HOH HOH . I 8 HOH A 65 765 468 HOH HOH . I 8 HOH A 66 766 469 HOH HOH . I 8 HOH A 67 767 470 HOH HOH . I 8 HOH A 68 768 471 HOH HOH . I 8 HOH A 69 769 472 HOH HOH . I 8 HOH A 70 770 473 HOH HOH . I 8 HOH A 71 771 474 HOH HOH . I 8 HOH A 72 772 475 HOH HOH . I 8 HOH A 73 773 476 HOH HOH . I 8 HOH A 74 774 477 HOH HOH . I 8 HOH A 75 775 478 HOH HOH . I 8 HOH A 76 776 479 HOH HOH . I 8 HOH A 77 777 480 HOH HOH . I 8 HOH A 78 778 481 HOH HOH . I 8 HOH A 79 779 482 HOH HOH . I 8 HOH A 80 780 483 HOH HOH . I 8 HOH A 81 781 484 HOH HOH . I 8 HOH A 82 782 485 HOH HOH . I 8 HOH A 83 783 486 HOH HOH . I 8 HOH A 84 784 487 HOH HOH . I 8 HOH A 85 785 488 HOH HOH . I 8 HOH A 86 786 489 HOH HOH . I 8 HOH A 87 787 490 HOH HOH . I 8 HOH A 88 788 491 HOH HOH . I 8 HOH A 89 789 492 HOH HOH . I 8 HOH A 90 790 493 HOH HOH . I 8 HOH A 91 791 494 HOH HOH . I 8 HOH A 92 792 495 HOH HOH . I 8 HOH A 93 793 496 HOH HOH . I 8 HOH A 94 794 497 HOH HOH . I 8 HOH A 95 795 498 HOH HOH . I 8 HOH A 96 796 499 HOH HOH . I 8 HOH A 97 797 500 HOH HOH . I 8 HOH A 98 798 501 HOH HOH . I 8 HOH A 99 799 502 HOH HOH . I 8 HOH A 100 800 503 HOH HOH . I 8 HOH A 101 801 504 HOH HOH . I 8 HOH A 102 802 505 HOH HOH . I 8 HOH A 103 803 506 HOH HOH . I 8 HOH A 104 804 507 HOH HOH . I 8 HOH A 105 805 508 HOH HOH . I 8 HOH A 106 806 509 HOH HOH . I 8 HOH A 107 807 510 HOH HOH . I 8 HOH A 108 808 511 HOH HOH . I 8 HOH A 109 809 512 HOH HOH . I 8 HOH A 110 810 513 HOH HOH . I 8 HOH A 111 811 514 HOH HOH . I 8 HOH A 112 812 515 HOH HOH . I 8 HOH A 113 813 516 HOH HOH . I 8 HOH A 114 814 517 HOH HOH . I 8 HOH A 115 815 518 HOH HOH . I 8 HOH A 116 816 519 HOH HOH . I 8 HOH A 117 817 520 HOH HOH . I 8 HOH A 118 818 521 HOH HOH . I 8 HOH A 119 819 522 HOH HOH . I 8 HOH A 120 820 523 HOH HOH . I 8 HOH A 121 821 524 HOH HOH . I 8 HOH A 122 822 525 HOH HOH . I 8 HOH A 123 823 526 HOH HOH . I 8 HOH A 124 824 527 HOH HOH . I 8 HOH A 125 825 528 HOH HOH . I 8 HOH A 126 826 529 HOH HOH . I 8 HOH A 127 827 530 HOH HOH . I 8 HOH A 128 828 531 HOH HOH . I 8 HOH A 129 829 532 HOH HOH . I 8 HOH A 130 830 533 HOH HOH . I 8 HOH A 131 831 534 HOH HOH . I 8 HOH A 132 832 535 HOH HOH . I 8 HOH A 133 833 536 HOH HOH . I 8 HOH A 134 834 537 HOH HOH . I 8 HOH A 135 835 538 HOH HOH . I 8 HOH A 136 836 539 HOH HOH . I 8 HOH A 137 837 540 HOH HOH . I 8 HOH A 138 838 541 HOH HOH . I 8 HOH A 139 839 542 HOH HOH . I 8 HOH A 140 840 543 HOH HOH . I 8 HOH A 141 841 544 HOH HOH . I 8 HOH A 142 842 545 HOH HOH . I 8 HOH A 143 843 546 HOH HOH . I 8 HOH A 144 844 547 HOH HOH . I 8 HOH A 145 845 548 HOH HOH . I 8 HOH A 146 846 549 HOH HOH . I 8 HOH A 147 847 550 HOH HOH . I 8 HOH A 148 848 552 HOH HOH . I 8 HOH A 149 849 553 HOH HOH . I 8 HOH A 150 850 554 HOH HOH . I 8 HOH A 151 851 555 HOH HOH . I 8 HOH A 152 852 556 HOH HOH . I 8 HOH A 153 853 557 HOH HOH . I 8 HOH A 154 854 558 HOH HOH . I 8 HOH A 155 855 559 HOH HOH . I 8 HOH A 156 856 560 HOH HOH . I 8 HOH A 157 857 561 HOH HOH . I 8 HOH A 158 858 562 HOH HOH . I 8 HOH A 159 859 563 HOH HOH . I 8 HOH A 160 860 564 HOH HOH . I 8 HOH A 161 861 565 HOH HOH . I 8 HOH A 162 862 566 HOH HOH . I 8 HOH A 163 863 567 HOH HOH . I 8 HOH A 164 864 568 HOH HOH . I 8 HOH A 165 865 569 HOH HOH . I 8 HOH A 166 866 570 HOH HOH . I 8 HOH A 167 867 571 HOH HOH . I 8 HOH A 168 868 572 HOH HOH . I 8 HOH A 169 869 573 HOH HOH . I 8 HOH A 170 870 574 HOH HOH . I 8 HOH A 171 871 575 HOH HOH . I 8 HOH A 172 872 576 HOH HOH . I 8 HOH A 173 873 577 HOH HOH . I 8 HOH A 174 874 578 HOH HOH . I 8 HOH A 175 875 579 HOH HOH . I 8 HOH A 176 876 580 HOH HOH . I 8 HOH A 177 877 581 HOH HOH . I 8 HOH A 178 878 582 HOH HOH . I 8 HOH A 179 879 583 HOH HOH . I 8 HOH A 180 880 584 HOH HOH . I 8 HOH A 181 881 585 HOH HOH . I 8 HOH A 182 882 586 HOH HOH . I 8 HOH A 183 883 587 HOH HOH . I 8 HOH A 184 884 588 HOH HOH . I 8 HOH A 185 885 589 HOH HOH . I 8 HOH A 186 886 590 HOH HOH . I 8 HOH A 187 887 591 HOH HOH . I 8 HOH A 188 888 592 HOH HOH . I 8 HOH A 189 889 594 HOH HOH . I 8 HOH A 190 890 595 HOH HOH . I 8 HOH A 191 891 596 HOH HOH . I 8 HOH A 192 892 597 HOH HOH . I 8 HOH A 193 893 598 HOH HOH . I 8 HOH A 194 894 599 HOH HOH . I 8 HOH A 195 895 600 HOH HOH . I 8 HOH A 196 896 601 HOH HOH . I 8 HOH A 197 897 602 HOH HOH . I 8 HOH A 198 898 603 HOH HOH . I 8 HOH A 199 899 604 HOH HOH . I 8 HOH A 200 900 605 HOH HOH . I 8 HOH A 201 901 606 HOH HOH . I 8 HOH A 202 902 607 HOH HOH . I 8 HOH A 203 903 608 HOH HOH . I 8 HOH A 204 904 609 HOH HOH . I 8 HOH A 205 905 610 HOH HOH . I 8 HOH A 206 906 611 HOH HOH . I 8 HOH A 207 907 612 HOH HOH . I 8 HOH A 208 908 613 HOH HOH . I 8 HOH A 209 909 614 HOH HOH . I 8 HOH A 210 910 615 HOH HOH . I 8 HOH A 211 911 616 HOH HOH . I 8 HOH A 212 912 617 HOH HOH . I 8 HOH A 213 913 618 HOH HOH . I 8 HOH A 214 914 619 HOH HOH . I 8 HOH A 215 915 620 HOH HOH . I 8 HOH A 216 916 621 HOH HOH . I 8 HOH A 217 917 622 HOH HOH . I 8 HOH A 218 918 623 HOH HOH . I 8 HOH A 219 919 624 HOH HOH . I 8 HOH A 220 920 625 HOH HOH . I 8 HOH A 221 921 626 HOH HOH . I 8 HOH A 222 922 627 HOH HOH . I 8 HOH A 223 923 628 HOH HOH . I 8 HOH A 224 924 629 HOH HOH . I 8 HOH A 225 925 630 HOH HOH . I 8 HOH A 226 926 631 HOH HOH . I 8 HOH A 227 927 632 HOH HOH . I 8 HOH A 228 928 633 HOH HOH . I 8 HOH A 229 929 634 HOH HOH . I 8 HOH A 230 930 635 HOH HOH . I 8 HOH A 231 931 636 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDQ . . . H 7 61.807 53.624 -0.851 1 93.79 ? N1 DDQ 700 A 1 HETATM 2 O O1 DDQ . . . H 7 61.041 54.4 -0.297 1 93.72 ? O1 DDQ 700 A 1 HETATM 3 C CM1 DDQ . . . H 7 63.052 54.371 -0.994 1 93.97 ? CM1 DDQ 700 A 1 HETATM 4 C CM2 DDQ . . . H 7 62.064 52.405 -0.102 1 93.78 ? CM2 DDQ 700 A 1 HETATM 5 C C1 DDQ . . . H 7 61.213 53.218 -2.111 1 93.75 ? C1 DDQ 700 A 1 HETATM 6 C C2 DDQ . . . H 7 60.226 52.127 -1.842 1 93.54 ? C2 DDQ 700 A 1 HETATM 7 C C3 DDQ . . . H 7 60.438 50.994 -2.812 1 93.37 ? C3 DDQ 700 A 1 HETATM 8 C C4 DDQ . . . H 7 59.162 50.66 -3.556 1 92.98 ? C4 DDQ 700 A 1 HETATM 9 C C5 DDQ . . . H 7 59.333 49.328 -4.229 1 92.83 ? C5 DDQ 700 A 1 HETATM 10 C C6 DDQ . . . H 7 58.62 49.269 -5.545 1 92.41 ? C6 DDQ 700 A 1 HETATM 11 C C7 DDQ . . . H 7 57.608 48.154 -5.487 1 92.08 ? C7 DDQ 700 A 1 HETATM 12 C C8 DDQ . . . H 7 58.22 46.78 -5.501 1 91.76 ? C8 DDQ 700 A 1 HETATM 13 C C9 DDQ . . . H 7 57.194 45.75 -5.07 1 91.47 ? C9 DDQ 700 A 1 HETATM 14 C C10 DDQ . . . H 7 57.229 45.562 -3.586 1 91.25 ? C10 DDQ 700 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #