data_2PRM
#
_model_server_result.job_id            DqMTxMDjWhBVJR-H4ZUx0A 
_model_server_result.datetime_utc      '2024-11-21 13:46:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2prm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":398}' 
#
_entry.id    2PRM 
#
_exptl.entry_id    2PRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2PRM 
_cell.length_a            90.05 
_cell.length_b            90.05 
_cell.length_c            123.2 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 70 n n 
N1 C10 FMN doub 71 n n 
C2 O2 FMN doub 72 n n 
C2 N3 FMN sing 73 n n 
N3 C4 FMN sing 74 n n 
N3 HN3 FMN sing 75 n n 
C4 O4 FMN doub 76 n n 
C4 C4A FMN sing 77 n n 
C4A N5 FMN doub 78 n n 
C4A C10 FMN sing 79 n n 
N5 C5A FMN sing 80 n n 
C5A C6 FMN doub 81 n y 
C5A C9A FMN sing 82 n y 
C6 C7 FMN sing 83 n y 
C6 H6 FMN sing 84 n n 
C7 C7M FMN sing 85 n n 
C7 C8 FMN doub 86 n y 
C7M HM71 FMN sing 87 n n 
C7M HM72 FMN sing 88 n n 
C7M HM73 FMN sing 89 n n 
C8 C8M FMN sing 90 n n 
C8 C9 FMN sing 91 n y 
C8M HM81 FMN sing 92 n n 
C8M HM82 FMN sing 93 n n 
C8M HM83 FMN sing 94 n n 
C9 C9A FMN doub 95 n y 
C9 H9 FMN sing 96 n n 
C9A N10 FMN sing 97 n n 
N10 C10 FMN sing 98 n n 
N10 C1' FMN sing 99 n n 
C1' C2' FMN sing 100 n n 
C1' "H1'1" FMN sing 101 n n 
C1' "H1'2" FMN sing 102 n n 
C2' O2' FMN sing 103 n n 
C2' C3' FMN sing 104 n n 
C2' H2' FMN sing 105 n n 
O2' HO2' FMN sing 106 n n 
C3' O3' FMN sing 107 n n 
C3' C4' FMN sing 108 n n 
C3' H3' FMN sing 109 n n 
O3' HO3' FMN sing 110 n n 
C4' O4' FMN sing 111 n n 
C4' C5' FMN sing 112 n n 
C4' H4' FMN sing 113 n n 
O4' HO4' FMN sing 114 n n 
C5' O5' FMN sing 115 n n 
C5' "H5'1" FMN sing 116 n n 
C5' "H5'2" FMN sing 117 n n 
O5' P FMN sing 118 n n 
P O1P FMN doub 119 n n 
P O2P FMN sing 120 n n 
P O3P FMN sing 121 n n 
O2P HOP2 FMN sing 122 n n 
O3P HOP3 FMN sing 123 n n 
#
_atom_sites.entry_id                     2PRM 
_atom_sites.fract_transf_matrix[1][1]    0.011105 
_atom_sites.fract_transf_matrix[1][2]    0.006411 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 398 398 FMN FMN . 
C 3 ORO A 1 399 399 ORO ORO . 
D 4 HOH A 1 400 400 HOH HOH . 
D 4 HOH A 2 401 401 HOH HOH . 
D 4 HOH A 3 402 402 HOH HOH . 
D 4 HOH A 4 403 403 HOH HOH . 
D 4 HOH A 5 404 404 HOH HOH . 
D 4 HOH A 6 405 405 HOH HOH . 
D 4 HOH A 7 406 406 HOH HOH . 
D 4 HOH A 8 407 407 HOH HOH . 
D 4 HOH A 9 408 408 HOH HOH . 
D 4 HOH A 10 409 409 HOH HOH . 
D 4 HOH A 11 410 410 HOH HOH . 
D 4 HOH A 12 411 411 HOH HOH . 
D 4 HOH A 13 412 412 HOH HOH . 
D 4 HOH A 14 413 413 HOH HOH . 
D 4 HOH A 15 414 414 HOH HOH . 
D 4 HOH A 16 415 415 HOH HOH . 
D 4 HOH A 17 416 416 HOH HOH . 
D 4 HOH A 18 417 417 HOH HOH . 
D 4 HOH A 19 418 418 HOH HOH . 
D 4 HOH A 20 419 419 HOH HOH . 
D 4 HOH A 21 420 420 HOH HOH . 
D 4 HOH A 22 421 421 HOH HOH . 
D 4 HOH A 23 422 422 HOH HOH . 
D 4 HOH A 24 423 423 HOH HOH . 
D 4 HOH A 25 424 424 HOH HOH . 
D 4 HOH A 26 425 425 HOH HOH . 
D 4 HOH A 27 426 426 HOH HOH . 
D 4 HOH A 28 427 427 HOH HOH . 
D 4 HOH A 29 428 428 HOH HOH . 
D 4 HOH A 30 429 429 HOH HOH . 
D 4 HOH A 31 430 430 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . B 2 41.519 35.898 8.686 1 5.8 ? N1 FMN 398 A 1 
HETATM 2 C C2 FMN . . . B 2 41.889 35.215 9.828 1 5.89 ? C2 FMN 398 A 1 
HETATM 3 O O2 FMN . . . B 2 41.281 35.373 10.904 1 6.3 ? O2 FMN 398 A 1 
HETATM 4 N N3 FMN . . . B 2 42.944 34.358 9.781 1 4.79 ? N3 FMN 398 A 1 
HETATM 5 C C4 FMN . . . B 2 43.617 34.185 8.628 1 5.06 ? C4 FMN 398 A 1 
HETATM 6 O O4 FMN . . . B 2 44.662 33.548 8.745 1 5.59 ? O4 FMN 398 A 1 
HETATM 7 C C4A FMN . . . B 2 43.244 34.874 7.461 1 5.56 ? C4A FMN 398 A 1 
HETATM 8 N N5 FMN . . . B 2 43.913 34.739 6.248 1 6.49 ? N5 FMN 398 A 1 
HETATM 9 C C5A FMN . . . B 2 43.513 35.415 5.104 1 5.84 ? C5A FMN 398 A 1 
HETATM 10 C C6 FMN . . . B 2 44.194 35.261 3.905 1 5.31 ? C6 FMN 398 A 1 
HETATM 11 C C7 FMN . . . B 2 43.789 35.962 2.777 1 5.63 ? C7 FMN 398 A 1 
HETATM 12 C C7M FMN . . . B 2 44.669 35.86 1.556 1 5.58 ? C7M FMN 398 A 1 
HETATM 13 C C8 FMN . . . B 2 42.684 36.834 2.84 1 5.45 ? C8 FMN 398 A 1 
HETATM 14 C C8M FMN . . . B 2 42.506 37.959 1.867 1 5.05 ? C8M FMN 398 A 1 
HETATM 15 C C9 FMN . . . B 2 42.012 36.983 4.036 1 5.54 ? C9 FMN 398 A 1 
HETATM 16 C C9A FMN . . . B 2 42.423 36.275 5.169 1 5.99 ? C9A FMN 398 A 1 
HETATM 17 N N10 FMN . . . B 2 41.772 36.443 6.379 1 5.35 ? N10 FMN 398 A 1 
HETATM 18 C C10 FMN . . . B 2 42.173 35.737 7.503 1 5.16 ? C10 FMN 398 A 1 
HETATM 19 C C1' FMN . . . B 2 40.484 37.191 6.373 1 3.05 ? C1' FMN 398 A 1 
HETATM 20 C C2' FMN . . . B 2 40.748 38.634 6.683 1 2.95 ? C2' FMN 398 A 1 
HETATM 21 O O2' FMN . . . B 2 41.227 38.586 7.994 1 2 ? O2' FMN 398 A 1 
HETATM 22 C C3' FMN . . . B 2 39.452 39.449 6.649 1 5.54 ? C3' FMN 398 A 1 
HETATM 23 O O3' FMN . . . B 2 38.555 38.96 7.643 1 6.95 ? O3' FMN 398 A 1 
HETATM 24 C C4' FMN . . . B 2 38.702 39.485 5.296 1 6.32 ? C4' FMN 398 A 1 
HETATM 25 O O4' FMN . . . B 2 39.55 39.458 4.184 1 5.6 ? O4' FMN 398 A 1 
HETATM 26 C C5' FMN . . . B 2 37.87 40.746 5.129 1 7.25 ? C5' FMN 398 A 1 
HETATM 27 O O5' FMN . . . B 2 38.703 41.881 5.016 1 5.99 ? O5' FMN 398 A 1 
HETATM 28 P P FMN . . . B 2 39.249 42.404 3.618 1 5.92 ? P FMN 398 A 1 
HETATM 29 O O1P FMN . . . B 2 40.452 41.604 3.269 1 6.41 ? O1P FMN 398 A 1 
HETATM 30 O O2P FMN . . . B 2 39.7 43.849 3.775 1 9.38 ? O2P FMN 398 A 1 
HETATM 31 O O3P FMN . . . B 2 38.236 42.29 2.518 1 6.6 ? O3P FMN 398 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#