data_2PRM # _model_server_result.job_id g1XGAF2pcXNikOJFjUqeFA _model_server_result.datetime_utc '2024-11-21 14:38:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2prm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":399}' # _entry.id 2PRM # _exptl.entry_id 2PRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PRM _cell.length_a 90.05 _cell.length_b 90.05 _cell.length_c 123.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 278 n y N1 C6 ORO sing 279 n y N1 HN1 ORO sing 280 n n C2 O2 ORO doub 281 n n C2 N3 ORO sing 282 n y N3 C4 ORO sing 283 n y N3 HN3 ORO sing 284 n n C4 O4 ORO doub 285 n n C4 C5 ORO sing 286 n y C5 C6 ORO doub 287 n y C5 H5 ORO sing 288 n n C6 C7 ORO sing 289 n n C7 O71 ORO doub 290 n n C7 O72 ORO sing 291 n n O72 HO7 ORO sing 292 n n # _atom_sites.entry_id 2PRM _atom_sites.fract_transf_matrix[1][1] 0.011105 _atom_sites.fract_transf_matrix[1][2] 0.006411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 398 398 FMN FMN . C 3 ORO A 1 399 399 ORO ORO . D 4 HOH A 1 400 400 HOH HOH . D 4 HOH A 2 401 401 HOH HOH . D 4 HOH A 3 402 402 HOH HOH . D 4 HOH A 4 403 403 HOH HOH . D 4 HOH A 5 404 404 HOH HOH . D 4 HOH A 6 405 405 HOH HOH . D 4 HOH A 7 406 406 HOH HOH . D 4 HOH A 8 407 407 HOH HOH . D 4 HOH A 9 408 408 HOH HOH . D 4 HOH A 10 409 409 HOH HOH . D 4 HOH A 11 410 410 HOH HOH . D 4 HOH A 12 411 411 HOH HOH . D 4 HOH A 13 412 412 HOH HOH . D 4 HOH A 14 413 413 HOH HOH . D 4 HOH A 15 414 414 HOH HOH . D 4 HOH A 16 415 415 HOH HOH . D 4 HOH A 17 416 416 HOH HOH . D 4 HOH A 18 417 417 HOH HOH . D 4 HOH A 19 418 418 HOH HOH . D 4 HOH A 20 419 419 HOH HOH . D 4 HOH A 21 420 420 HOH HOH . D 4 HOH A 22 421 421 HOH HOH . D 4 HOH A 23 422 422 HOH HOH . D 4 HOH A 24 423 423 HOH HOH . D 4 HOH A 25 424 424 HOH HOH . D 4 HOH A 26 425 425 HOH HOH . D 4 HOH A 27 426 426 HOH HOH . D 4 HOH A 28 427 427 HOH HOH . D 4 HOH A 29 428 428 HOH HOH . D 4 HOH A 30 429 429 HOH HOH . D 4 HOH A 31 430 430 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 41.532 32.201 5.091 1 10.31 ? N1 ORO 399 A 1 HETATM 2 C C2 ORO . . . C 3 40.585 33.059 5.467 1 10.82 ? C2 ORO 399 A 1 HETATM 3 O O2 ORO . . . C 3 39.993 33.741 4.608 1 10.73 ? O2 ORO 399 A 1 HETATM 4 N N3 ORO . . . C 3 40.259 33.186 6.753 1 9.77 ? N3 ORO 399 A 1 HETATM 5 C C4 ORO . . . C 3 40.868 32.456 7.668 1 8.13 ? C4 ORO 399 A 1 HETATM 6 O O4 ORO . . . C 3 40.566 32.602 8.85 1 9.11 ? O4 ORO 399 A 1 HETATM 7 C C5 ORO . . . C 3 41.829 31.545 7.313 1 8.48 ? C5 ORO 399 A 1 HETATM 8 C C6 ORO . . . C 3 42.136 31.445 5.985 1 8.83 ? C6 ORO 399 A 1 HETATM 9 C C7 ORO . . . C 3 43.191 30.516 5.543 1 10.42 ? C7 ORO 399 A 1 HETATM 10 O O71 ORO . . . C 3 44.324 30.716 6.053 1 11.77 ? O71 ORO 399 A 1 HETATM 11 O O72 ORO . . . C 3 42.92 29.629 4.698 1 10.19 ? O72 ORO 399 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #