data_2PRV # _model_server_result.job_id vQjpG-aFkSiyMDTyXq2Ikg _model_server_result.datetime_utc '2025-08-31 22:45:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2prv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 2PRV # _exptl.entry_id 2PRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 84.54 _cell.angle_beta 67.52 _cell.angle_gamma 73.12 _cell.entry_id 2PRV _cell.length_a 40.128 _cell.length_b 45.2 _cell.length_c 48.083 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C MSE 2 A MSE 1 1_555 A N ILE 3 A ILE 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 2 A MSE 1 1_555 A N ILE 3 A ILE 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C LYS 105 A LYS 104 1_555 A N MSE 106 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale6 A C MSE 106 A MSE 105 1_555 A N LYS 107 A LYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C GLY 1 B GLY 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 B C MSE 2 B MSE 1 1_555 B N ILE 3 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 B C LYS 105 B LYS 104 1_555 B N MSE 106 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 B C MSE 106 B MSE 105 1_555 B N LYS 107 B LYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2PRV _atom_sites.fract_transf_matrix[1][1] 0.02492 _atom_sites.fract_transf_matrix[1][2] -0.00756 _atom_sites.fract_transf_matrix[1][3] -0.01045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02312 _atom_sites.fract_transf_matrix[2][3] 0.00041 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 153 2 SO4 SO4 . D 3 EDO A 1 154 5 EDO EDO . E 3 EDO A 1 155 6 EDO EDO . F 3 EDO A 1 156 7 EDO EDO . G 3 EDO A 1 157 8 EDO EDO . H 3 EDO A 1 158 10 EDO EDO . I 3 EDO A 1 159 11 EDO EDO . J 3 EDO A 1 160 12 EDO EDO . K 3 EDO A 1 161 17 EDO EDO . L 2 SO4 B 1 153 1 SO4 SO4 . M 3 EDO B 1 154 3 EDO EDO . N 3 EDO B 1 155 4 EDO EDO . O 3 EDO B 1 156 9 EDO EDO . P 3 EDO B 1 157 13 EDO EDO . Q 3 EDO B 1 158 14 EDO EDO . R 3 EDO B 1 159 15 EDO EDO . S 3 EDO B 1 160 16 EDO EDO . T 4 HOH A 1 162 20 HOH HOH . T 4 HOH A 2 163 22 HOH HOH . T 4 HOH A 3 164 25 HOH HOH . T 4 HOH A 4 165 29 HOH HOH . T 4 HOH A 5 166 31 HOH HOH . T 4 HOH A 6 167 32 HOH HOH . T 4 HOH A 7 168 34 HOH HOH . T 4 HOH A 8 169 35 HOH HOH . T 4 HOH A 9 170 36 HOH HOH . T 4 HOH A 10 171 37 HOH HOH . T 4 HOH A 11 172 41 HOH HOH . T 4 HOH A 12 173 42 HOH HOH . T 4 HOH A 13 174 44 HOH HOH . T 4 HOH A 14 175 45 HOH HOH . T 4 HOH A 15 176 46 HOH HOH . T 4 HOH A 16 177 47 HOH HOH . T 4 HOH A 17 178 48 HOH HOH . T 4 HOH A 18 179 51 HOH HOH . T 4 HOH A 19 180 54 HOH HOH . T 4 HOH A 20 181 58 HOH HOH . T 4 HOH A 21 182 60 HOH HOH . T 4 HOH A 22 183 61 HOH HOH . T 4 HOH A 23 184 64 HOH HOH . T 4 HOH A 24 185 65 HOH HOH . T 4 HOH A 25 186 66 HOH HOH . T 4 HOH A 26 187 69 HOH HOH . T 4 HOH A 27 188 70 HOH HOH . T 4 HOH A 28 189 71 HOH HOH . T 4 HOH A 29 190 72 HOH HOH . T 4 HOH A 30 191 73 HOH HOH . T 4 HOH A 31 192 74 HOH HOH . T 4 HOH A 32 193 76 HOH HOH . T 4 HOH A 33 194 77 HOH HOH . T 4 HOH A 34 195 78 HOH HOH . T 4 HOH A 35 196 80 HOH HOH . T 4 HOH A 36 197 81 HOH HOH . T 4 HOH A 37 198 82 HOH HOH . T 4 HOH A 38 199 84 HOH HOH . T 4 HOH A 39 200 86 HOH HOH . T 4 HOH A 40 201 88 HOH HOH . T 4 HOH A 41 202 89 HOH HOH . T 4 HOH A 42 203 90 HOH HOH . T 4 HOH A 43 204 92 HOH HOH . T 4 HOH A 44 205 93 HOH HOH . T 4 HOH A 45 206 94 HOH HOH . T 4 HOH A 46 207 98 HOH HOH . T 4 HOH A 47 208 99 HOH HOH . T 4 HOH A 48 209 101 HOH HOH . T 4 HOH A 49 210 105 HOH HOH . T 4 HOH A 50 211 106 HOH HOH . T 4 HOH A 51 212 107 HOH HOH . T 4 HOH A 52 213 109 HOH HOH . T 4 HOH A 53 214 110 HOH HOH . T 4 HOH A 54 215 112 HOH HOH . T 4 HOH A 55 216 113 HOH HOH . T 4 HOH A 56 217 114 HOH HOH . T 4 HOH A 57 218 115 HOH HOH . T 4 HOH A 58 219 116 HOH HOH . T 4 HOH A 59 220 118 HOH HOH . T 4 HOH A 60 221 120 HOH HOH . T 4 HOH A 61 222 122 HOH HOH . T 4 HOH A 62 223 123 HOH HOH . T 4 HOH A 63 224 124 HOH HOH . T 4 HOH A 64 225 126 HOH HOH . T 4 HOH A 65 226 129 HOH HOH . T 4 HOH A 66 227 130 HOH HOH . T 4 HOH A 67 228 131 HOH HOH . T 4 HOH A 68 229 133 HOH HOH . T 4 HOH A 69 230 135 HOH HOH . T 4 HOH A 70 231 136 HOH HOH . T 4 HOH A 71 232 137 HOH HOH . T 4 HOH A 72 233 138 HOH HOH . T 4 HOH A 73 234 139 HOH HOH . T 4 HOH A 74 235 140 HOH HOH . T 4 HOH A 75 236 142 HOH HOH . T 4 HOH A 76 237 143 HOH HOH . T 4 HOH A 77 238 145 HOH HOH . T 4 HOH A 78 239 147 HOH HOH . T 4 HOH A 79 240 148 HOH HOH . T 4 HOH A 80 241 151 HOH HOH . T 4 HOH A 81 242 152 HOH HOH . T 4 HOH A 82 243 156 HOH HOH . T 4 HOH A 83 244 159 HOH HOH . T 4 HOH A 84 245 160 HOH HOH . T 4 HOH A 85 246 162 HOH HOH . T 4 HOH A 86 247 163 HOH HOH . T 4 HOH A 87 248 164 HOH HOH . T 4 HOH A 88 249 165 HOH HOH . T 4 HOH A 89 250 166 HOH HOH . T 4 HOH A 90 251 167 HOH HOH . T 4 HOH A 91 252 168 HOH HOH . T 4 HOH A 92 253 169 HOH HOH . T 4 HOH A 93 254 171 HOH HOH . T 4 HOH A 94 255 173 HOH HOH . T 4 HOH A 95 256 176 HOH HOH . T 4 HOH A 96 257 181 HOH HOH . T 4 HOH A 97 258 182 HOH HOH . T 4 HOH A 98 259 183 HOH HOH . T 4 HOH A 99 260 184 HOH HOH . T 4 HOH A 100 261 185 HOH HOH . T 4 HOH A 101 262 186 HOH HOH . T 4 HOH A 102 263 187 HOH HOH . T 4 HOH A 103 264 195 HOH HOH . T 4 HOH A 104 265 196 HOH HOH . T 4 HOH A 105 266 197 HOH HOH . T 4 HOH A 106 267 202 HOH HOH . T 4 HOH A 107 268 203 HOH HOH . T 4 HOH A 108 269 205 HOH HOH . T 4 HOH A 109 270 211 HOH HOH . T 4 HOH A 110 271 212 HOH HOH . T 4 HOH A 111 272 213 HOH HOH . T 4 HOH A 112 273 214 HOH HOH . T 4 HOH A 113 274 215 HOH HOH . T 4 HOH A 114 275 217 HOH HOH . T 4 HOH A 115 276 218 HOH HOH . T 4 HOH A 116 277 219 HOH HOH . T 4 HOH A 117 278 220 HOH HOH . T 4 HOH A 118 279 221 HOH HOH . T 4 HOH A 119 280 222 HOH HOH . T 4 HOH A 120 281 223 HOH HOH . T 4 HOH A 121 282 224 HOH HOH . T 4 HOH A 122 283 225 HOH HOH . T 4 HOH A 123 284 226 HOH HOH . T 4 HOH A 124 285 228 HOH HOH . T 4 HOH A 125 286 232 HOH HOH . T 4 HOH A 126 287 237 HOH HOH . T 4 HOH A 127 288 239 HOH HOH . T 4 HOH A 128 289 240 HOH HOH . T 4 HOH A 129 290 241 HOH HOH . T 4 HOH A 130 291 242 HOH HOH . T 4 HOH A 131 292 245 HOH HOH . T 4 HOH A 132 293 247 HOH HOH . T 4 HOH A 133 294 249 HOH HOH . T 4 HOH A 134 295 255 HOH HOH . T 4 HOH A 135 296 256 HOH HOH . T 4 HOH A 136 297 264 HOH HOH . U 4 HOH B 1 161 18 HOH HOH . U 4 HOH B 2 162 19 HOH HOH . U 4 HOH B 3 163 21 HOH HOH . U 4 HOH B 4 164 23 HOH HOH . U 4 HOH B 5 165 24 HOH HOH . U 4 HOH B 6 166 26 HOH HOH . U 4 HOH B 7 167 27 HOH HOH . U 4 HOH B 8 168 28 HOH HOH . U 4 HOH B 9 169 30 HOH HOH . U 4 HOH B 10 170 33 HOH HOH . U 4 HOH B 11 171 38 HOH HOH . U 4 HOH B 12 172 39 HOH HOH . U 4 HOH B 13 173 40 HOH HOH . U 4 HOH B 14 174 43 HOH HOH . U 4 HOH B 15 175 49 HOH HOH . U 4 HOH B 16 176 50 HOH HOH . U 4 HOH B 17 177 52 HOH HOH . U 4 HOH B 18 178 53 HOH HOH . U 4 HOH B 19 179 55 HOH HOH . U 4 HOH B 20 180 56 HOH HOH . U 4 HOH B 21 181 57 HOH HOH . U 4 HOH B 22 182 59 HOH HOH . U 4 HOH B 23 183 62 HOH HOH . U 4 HOH B 24 184 63 HOH HOH . U 4 HOH B 25 185 67 HOH HOH . U 4 HOH B 26 186 68 HOH HOH . U 4 HOH B 27 187 75 HOH HOH . U 4 HOH B 28 188 79 HOH HOH . U 4 HOH B 29 189 83 HOH HOH . U 4 HOH B 30 190 85 HOH HOH . U 4 HOH B 31 191 87 HOH HOH . U 4 HOH B 32 192 91 HOH HOH . U 4 HOH B 33 193 95 HOH HOH . U 4 HOH B 34 194 96 HOH HOH . U 4 HOH B 35 195 97 HOH HOH . U 4 HOH B 36 196 100 HOH HOH . U 4 HOH B 37 197 102 HOH HOH . U 4 HOH B 38 198 103 HOH HOH . U 4 HOH B 39 199 104 HOH HOH . U 4 HOH B 40 200 108 HOH HOH . U 4 HOH B 41 201 111 HOH HOH . U 4 HOH B 42 202 117 HOH HOH . U 4 HOH B 43 203 119 HOH HOH . U 4 HOH B 44 204 121 HOH HOH . U 4 HOH B 45 205 125 HOH HOH . U 4 HOH B 46 206 127 HOH HOH . U 4 HOH B 47 207 128 HOH HOH . U 4 HOH B 48 208 132 HOH HOH . U 4 HOH B 49 209 134 HOH HOH . U 4 HOH B 50 210 141 HOH HOH . U 4 HOH B 51 211 144 HOH HOH . U 4 HOH B 52 212 146 HOH HOH . U 4 HOH B 53 213 149 HOH HOH . U 4 HOH B 54 214 150 HOH HOH . U 4 HOH B 55 215 153 HOH HOH . U 4 HOH B 56 216 154 HOH HOH . U 4 HOH B 57 217 155 HOH HOH . U 4 HOH B 58 218 157 HOH HOH . U 4 HOH B 59 219 158 HOH HOH . U 4 HOH B 60 220 161 HOH HOH . U 4 HOH B 61 221 170 HOH HOH . U 4 HOH B 62 222 172 HOH HOH . U 4 HOH B 63 223 174 HOH HOH . U 4 HOH B 64 224 175 HOH HOH . U 4 HOH B 65 225 177 HOH HOH . U 4 HOH B 66 226 178 HOH HOH . U 4 HOH B 67 227 179 HOH HOH . U 4 HOH B 68 228 180 HOH HOH . U 4 HOH B 69 229 188 HOH HOH . U 4 HOH B 70 230 189 HOH HOH . U 4 HOH B 71 231 190 HOH HOH . U 4 HOH B 72 232 191 HOH HOH . U 4 HOH B 73 233 192 HOH HOH . U 4 HOH B 74 234 193 HOH HOH . U 4 HOH B 75 235 194 HOH HOH . U 4 HOH B 76 236 198 HOH HOH . U 4 HOH B 77 237 199 HOH HOH . U 4 HOH B 78 238 200 HOH HOH . U 4 HOH B 79 239 201 HOH HOH . U 4 HOH B 80 240 204 HOH HOH . U 4 HOH B 81 241 206 HOH HOH . U 4 HOH B 82 242 207 HOH HOH . U 4 HOH B 83 243 208 HOH HOH . U 4 HOH B 84 244 209 HOH HOH . U 4 HOH B 85 245 210 HOH HOH . U 4 HOH B 86 246 216 HOH HOH . U 4 HOH B 87 247 227 HOH HOH . U 4 HOH B 88 248 229 HOH HOH . U 4 HOH B 89 249 230 HOH HOH . U 4 HOH B 90 250 231 HOH HOH . U 4 HOH B 91 251 233 HOH HOH . U 4 HOH B 92 252 234 HOH HOH . U 4 HOH B 93 253 235 HOH HOH . U 4 HOH B 94 254 236 HOH HOH . U 4 HOH B 95 255 238 HOH HOH . U 4 HOH B 96 256 243 HOH HOH . U 4 HOH B 97 257 244 HOH HOH . U 4 HOH B 98 258 246 HOH HOH . U 4 HOH B 99 259 248 HOH HOH . U 4 HOH B 100 260 250 HOH HOH . U 4 HOH B 101 261 251 HOH HOH . U 4 HOH B 102 262 252 HOH HOH . U 4 HOH B 103 263 253 HOH HOH . U 4 HOH B 104 264 254 HOH HOH . U 4 HOH B 105 265 257 HOH HOH . U 4 HOH B 106 266 258 HOH HOH . U 4 HOH B 107 267 259 HOH HOH . U 4 HOH B 108 268 260 HOH HOH . U 4 HOH B 109 269 261 HOH HOH . U 4 HOH B 110 270 262 HOH HOH . U 4 HOH B 111 271 263 HOH HOH . U 4 HOH B 112 272 265 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 107.51 58.409 57.005 1 28.3 ? C1 EDO 154 A 1 HETATM 2 O O1 EDO . . . D 3 106.759 59.567 56.658 1 26.27 ? O1 EDO 154 A 1 HETATM 3 C C2 EDO . . . D 3 108.195 58.667 58.335 1 25.64 ? C2 EDO 154 A 1 HETATM 4 O O2 EDO . . . D 3 107.364 58.301 59.42 1 17.29 ? O2 EDO 154 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 51 _model_server_stats.element_count 4 #