data_2PSM # _model_server_result.job_id JcffqVx1m_sAXx73eUsdnw _model_server_result.datetime_utc '2024-12-26 16:05:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2psm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":115}' # _entry.id 2PSM # _exptl.entry_id 2PSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PSM _cell.length_a 118.45 _cell.length_b 118.45 _cell.length_c 76.11 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G 1 1 C,D,E,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 35 1_555 A SG CYS 92 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 49 A CYS 42 1_555 A SG CYS 95 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 11 F CYS 4 1_555 B SG CYS 53 F CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 37 F CYS 30 1_555 B SG CYS 71 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 C SG CYS 42 B CYS 35 1_555 C SG CYS 92 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 C SG CYS 49 B CYS 42 1_555 C SG CYS 95 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 D SG CYS 11 C CYS 4 1_555 D SG CYS 53 C CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 37 C CYS 30 1_555 D SG CYS 71 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 2PSM _atom_sites.fract_transf_matrix[1][1] 0.008442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BEN B 1 115 2 BEN BAM . F 4 HOH A 1 115 5 HOH TIP . F 4 HOH A 2 116 9 HOH TIP . F 4 HOH A 3 117 11 HOH TIP . F 4 HOH A 4 118 16 HOH TIP . F 4 HOH A 5 119 19 HOH TIP . F 4 HOH A 6 120 23 HOH TIP . F 4 HOH A 7 121 24 HOH TIP . F 4 HOH A 8 122 26 HOH TIP . F 4 HOH A 9 123 28 HOH TIP . F 4 HOH A 10 124 37 HOH TIP . F 4 HOH A 11 125 60 HOH TIP . F 4 HOH A 12 126 61 HOH TIP . F 4 HOH A 13 127 63 HOH TIP . F 4 HOH A 14 128 64 HOH TIP . F 4 HOH A 15 129 71 HOH TIP . F 4 HOH A 16 130 72 HOH TIP . F 4 HOH A 17 131 76 HOH TIP . F 4 HOH A 18 132 78 HOH TIP . F 4 HOH A 19 133 80 HOH TIP . F 4 HOH A 20 134 84 HOH TIP . F 4 HOH A 21 135 106 HOH TIP . F 4 HOH A 22 136 107 HOH TIP . F 4 HOH A 23 137 108 HOH TIP . F 4 HOH A 24 138 116 HOH TIP . F 4 HOH A 25 139 117 HOH TIP . F 4 HOH A 26 140 145 HOH TIP . F 4 HOH A 27 141 171 HOH TIP . G 4 HOH F 1 72 10 HOH TIP . G 4 HOH F 2 73 12 HOH TIP . G 4 HOH F 3 74 15 HOH TIP . G 4 HOH F 4 75 18 HOH TIP . G 4 HOH F 5 76 36 HOH TIP . G 4 HOH F 6 77 38 HOH TIP . G 4 HOH F 7 78 39 HOH TIP . G 4 HOH F 8 79 40 HOH TIP . G 4 HOH F 9 80 47 HOH TIP . G 4 HOH F 10 81 58 HOH TIP . G 4 HOH F 11 82 91 HOH TIP . G 4 HOH F 12 83 92 HOH TIP . G 4 HOH F 13 84 94 HOH TIP . G 4 HOH F 14 85 104 HOH TIP . G 4 HOH F 15 86 112 HOH TIP . G 4 HOH F 16 87 125 HOH TIP . G 4 HOH F 17 88 144 HOH TIP . G 4 HOH F 18 89 146 HOH TIP . H 4 HOH B 1 116 1 HOH TIP . H 4 HOH B 2 117 13 HOH TIP . H 4 HOH B 3 118 21 HOH TIP . H 4 HOH B 4 119 22 HOH TIP . H 4 HOH B 5 120 25 HOH TIP . H 4 HOH B 6 121 27 HOH TIP . H 4 HOH B 7 122 31 HOH TIP . H 4 HOH B 8 123 32 HOH TIP . H 4 HOH B 9 124 34 HOH TIP . H 4 HOH B 10 125 44 HOH TIP . H 4 HOH B 11 126 49 HOH TIP . H 4 HOH B 12 127 57 HOH TIP . H 4 HOH B 13 128 59 HOH TIP . H 4 HOH B 14 129 66 HOH TIP . H 4 HOH B 15 130 67 HOH TIP . H 4 HOH B 16 131 68 HOH TIP . H 4 HOH B 17 132 69 HOH TIP . H 4 HOH B 18 133 70 HOH TIP . H 4 HOH B 19 134 81 HOH TIP . H 4 HOH B 20 135 90 HOH TIP . H 4 HOH B 21 136 96 HOH TIP . H 4 HOH B 22 137 100 HOH TIP . H 4 HOH B 23 138 114 HOH TIP . H 4 HOH B 24 139 120 HOH TIP . H 4 HOH B 25 140 132 HOH TIP . H 4 HOH B 26 141 134 HOH TIP . H 4 HOH B 27 142 142 HOH TIP . H 4 HOH B 28 143 147 HOH TIP . H 4 HOH B 29 144 153 HOH TIP . H 4 HOH B 30 145 159 HOH TIP . H 4 HOH B 31 146 161 HOH TIP . I 4 HOH C 1 72 30 HOH TIP . I 4 HOH C 2 73 33 HOH TIP . I 4 HOH C 3 74 43 HOH TIP . I 4 HOH C 4 75 48 HOH TIP . I 4 HOH C 5 76 50 HOH TIP . I 4 HOH C 6 77 56 HOH TIP . I 4 HOH C 7 78 62 HOH TIP . I 4 HOH C 8 79 97 HOH TIP . I 4 HOH C 9 80 113 HOH TIP . I 4 HOH C 10 81 119 HOH TIP . I 4 HOH C 11 82 123 HOH TIP . I 4 HOH C 12 83 133 HOH TIP . I 4 HOH C 13 84 141 HOH TIP . I 4 HOH C 14 85 164 HOH TIP . I 4 HOH C 15 86 170 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . E 3 18.034 70.346 6.937 1 36.4 ? C1 BEN 115 B 1 HETATM 2 C C2 BEN . . . E 3 18.758 70.422 8.165 1 36.44 ? C2 BEN 115 B 1 HETATM 3 C C3 BEN . . . E 3 19.976 71.131 8.224 1 39.05 ? C3 BEN 115 B 1 HETATM 4 C C4 BEN . . . E 3 20.481 71.764 7.07 1 38.19 ? C4 BEN 115 B 1 HETATM 5 C C5 BEN . . . E 3 19.773 71.695 5.849 1 37.86 ? C5 BEN 115 B 1 HETATM 6 C C6 BEN . . . E 3 18.555 70.992 5.776 1 35.62 ? C6 BEN 115 B 1 HETATM 7 C C BEN . . . E 3 16.746 69.599 6.866 1 36.12 ? C BEN 115 B 1 HETATM 8 N N1 BEN . . . E 3 16.291 69.147 5.695 1 35.06 ? N1 BEN 115 B 1 HETATM 9 N N2 BEN . . . E 3 16.037 69.379 7.971 1 34.93 ? N2 BEN 115 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #