data_2PSY # _model_server_result.job_id YQSWv9re-2ZHFvVtDComcw _model_server_result.datetime_utc '2024-11-07 10:42:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2psy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2000}' # _entry.id 2PSY # _exptl.entry_id 2PSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.14 _cell.angle_gamma 90 _cell.entry_id 2PSY _cell.length_a 126.532 _cell.length_b 66.543 _cell.length_c 39.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG ? 1000 NAG 3 n C NAG 2 C 2 NAG ? 1001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 140 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 112 A CYS 129 1_555 A SG CYS 213 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 119 A CYS 136 1_555 A SG CYS 185 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 A SG CYS 151 A CYS 168 1_555 A SG CYS 165 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 175 A CYS 191 1_555 A SG CYS 200 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 142 A ASN 159 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B C ACE 1 B ACE 501 1_555 B N LEU 2 B LEU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? metalc ? metalc1 A NE2 HIS 10 A HIS 25 1_555 E ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc2 A ND1 HIS 81 A HIS 96 1_555 D ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A NE2 HIS 84 A HIS 99 1_555 D ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A OD1 ASP 102 A ASP 117 1_555 E ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc5 D ZN ZN . A ZN 2000 1_555 G O HOH . A HOH 2062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc6 D ZN ZN . A ZN 2000 1_555 H O HOH . B HOH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc7 E ZN ZN . A ZN 2001 1_555 G O HOH . A HOH 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc8 F ZN ZN . A ZN 2002 1_555 G O HOH . A HOH 2112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PSY _atom_sites.fract_transf_matrix[1][1] 0.007903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 2000 2000 ZN ZN . E 4 ZN A 1 2001 2001 ZN ZN . F 4 ZN A 1 2002 2002 ZN ZN . G 5 HOH A 1 2003 1 HOH WAT . G 5 HOH A 2 2004 2 HOH WAT . G 5 HOH A 3 2005 4 HOH WAT . G 5 HOH A 4 2006 5 HOH WAT . G 5 HOH A 5 2007 6 HOH WAT . G 5 HOH A 6 2008 7 HOH WAT . G 5 HOH A 7 2009 8 HOH WAT . G 5 HOH A 8 2010 9 HOH WAT . G 5 HOH A 9 2011 10 HOH WAT . G 5 HOH A 10 2012 11 HOH WAT . G 5 HOH A 11 2013 13 HOH WAT . G 5 HOH A 12 2014 14 HOH WAT . G 5 HOH A 13 2015 15 HOH WAT . G 5 HOH A 14 2016 16 HOH WAT . G 5 HOH A 15 2017 17 HOH WAT . G 5 HOH A 16 2018 18 HOH WAT . G 5 HOH A 17 2019 19 HOH WAT . G 5 HOH A 18 2020 20 HOH WAT . G 5 HOH A 19 2021 21 HOH WAT . G 5 HOH A 20 2022 22 HOH WAT . G 5 HOH A 21 2023 23 HOH WAT . G 5 HOH A 22 2024 24 HOH WAT . G 5 HOH A 23 2025 25 HOH WAT . G 5 HOH A 24 2026 26 HOH WAT . G 5 HOH A 25 2027 27 HOH WAT . G 5 HOH A 26 2028 28 HOH WAT . G 5 HOH A 27 2029 29 HOH WAT . G 5 HOH A 28 2030 30 HOH WAT . G 5 HOH A 29 2031 31 HOH WAT . G 5 HOH A 30 2032 32 HOH WAT . G 5 HOH A 31 2033 33 HOH WAT . G 5 HOH A 32 2034 34 HOH WAT . G 5 HOH A 33 2035 35 HOH WAT . G 5 HOH A 34 2036 38 HOH WAT . G 5 HOH A 35 2037 39 HOH WAT . G 5 HOH A 36 2038 40 HOH WAT . G 5 HOH A 37 2039 42 HOH WAT . G 5 HOH A 38 2040 43 HOH WAT . G 5 HOH A 39 2041 44 HOH WAT . G 5 HOH A 40 2042 45 HOH WAT . G 5 HOH A 41 2043 46 HOH WAT . G 5 HOH A 42 2044 47 HOH WAT . G 5 HOH A 43 2045 49 HOH WAT . G 5 HOH A 44 2046 50 HOH WAT . G 5 HOH A 45 2047 51 HOH WAT . G 5 HOH A 46 2048 52 HOH WAT . G 5 HOH A 47 2049 53 HOH WAT . G 5 HOH A 48 2050 54 HOH WAT . G 5 HOH A 49 2051 55 HOH WAT . G 5 HOH A 50 2052 56 HOH WAT . G 5 HOH A 51 2053 57 HOH WAT . G 5 HOH A 52 2054 58 HOH WAT . G 5 HOH A 53 2055 59 HOH WAT . G 5 HOH A 54 2056 60 HOH WAT . G 5 HOH A 55 2057 61 HOH WAT . G 5 HOH A 56 2058 62 HOH WAT . G 5 HOH A 57 2059 63 HOH WAT . G 5 HOH A 58 2060 64 HOH WAT . G 5 HOH A 59 2061 65 HOH WAT . G 5 HOH A 60 2062 67 HOH WAT . G 5 HOH A 61 2063 68 HOH WAT . G 5 HOH A 62 2064 69 HOH WAT . G 5 HOH A 63 2065 70 HOH WAT . G 5 HOH A 64 2066 71 HOH WAT . G 5 HOH A 65 2067 72 HOH WAT . G 5 HOH A 66 2068 73 HOH WAT . G 5 HOH A 67 2069 74 HOH WAT . G 5 HOH A 68 2070 75 HOH WAT . G 5 HOH A 69 2071 76 HOH WAT . G 5 HOH A 70 2072 77 HOH WAT . G 5 HOH A 71 2073 79 HOH WAT . G 5 HOH A 72 2074 80 HOH WAT . G 5 HOH A 73 2075 81 HOH WAT . G 5 HOH A 74 2076 82 HOH WAT . G 5 HOH A 75 2077 83 HOH WAT . G 5 HOH A 76 2078 84 HOH WAT . G 5 HOH A 77 2079 85 HOH WAT . G 5 HOH A 78 2080 86 HOH WAT . G 5 HOH A 79 2081 87 HOH WAT . G 5 HOH A 80 2082 88 HOH WAT . G 5 HOH A 81 2083 89 HOH WAT . G 5 HOH A 82 2084 90 HOH WAT . G 5 HOH A 83 2085 91 HOH WAT . G 5 HOH A 84 2086 92 HOH WAT . G 5 HOH A 85 2087 93 HOH WAT . G 5 HOH A 86 2088 94 HOH WAT . G 5 HOH A 87 2089 95 HOH WAT . G 5 HOH A 88 2090 96 HOH WAT . G 5 HOH A 89 2091 97 HOH WAT . G 5 HOH A 90 2092 99 HOH WAT . G 5 HOH A 91 2093 100 HOH WAT . G 5 HOH A 92 2094 102 HOH WAT . G 5 HOH A 93 2095 104 HOH WAT . G 5 HOH A 94 2096 105 HOH WAT . G 5 HOH A 95 2097 106 HOH WAT . G 5 HOH A 96 2098 107 HOH WAT . G 5 HOH A 97 2099 108 HOH WAT . G 5 HOH A 98 2100 109 HOH WAT . G 5 HOH A 99 2101 110 HOH WAT . G 5 HOH A 100 2102 111 HOH WAT . G 5 HOH A 101 2103 112 HOH WAT . G 5 HOH A 102 2104 113 HOH WAT . G 5 HOH A 103 2105 115 HOH WAT . G 5 HOH A 104 2106 116 HOH WAT . G 5 HOH A 105 2107 117 HOH WAT . G 5 HOH A 106 2108 118 HOH WAT . G 5 HOH A 107 2109 119 HOH WAT . G 5 HOH A 108 2110 120 HOH WAT . G 5 HOH A 109 2111 122 HOH WAT . G 5 HOH A 110 2112 123 HOH WAT . G 5 HOH A 111 2113 124 HOH WAT . H 5 HOH B 1 12 12 HOH WAT . H 5 HOH B 2 36 36 HOH WAT . H 5 HOH B 3 48 48 HOH WAT . H 5 HOH B 4 66 66 HOH WAT . H 5 HOH B 5 78 78 HOH WAT . H 5 HOH B 6 98 98 HOH WAT . H 5 HOH B 7 101 101 HOH WAT . H 5 HOH B 8 114 114 HOH WAT . H 5 HOH B 9 121 121 HOH WAT . I 5 HOH C 1 3 3 HOH WAT . I 5 HOH C 2 37 37 HOH WAT . I 5 HOH C 3 41 41 HOH WAT . I 5 HOH C 4 103 103 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 3.705 _atom_site.Cartn_y -7.529 _atom_site.Cartn_z 26.967 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2000 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #