data_2PT9
#
_model_server_result.job_id            Xp5PGYb9MfHu4lAie2q4FA 
_model_server_result.datetime_utc      '2024-11-14 04:52:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    2PT9 
#
_exptl.entry_id    2PT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.53 
_cell.angle_gamma         90 
_cell.entry_id            2PT9 
_cell.length_a            196.24 
_cell.length_b            134.1 
_cell.length_c            48.35 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,P 1 1,2 
B,C,H,I,J,K,L,M,N,O,Q,R 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 K N N 
? 5 O N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 192 n n 
C1 C2 GOL sing 193 n n 
C1 H11 GOL sing 194 n n 
C1 H12 GOL sing 195 n n 
O1 HO1 GOL sing 196 n n 
C2 O2 GOL sing 197 n n 
C2 C3 GOL sing 198 n n 
C2 H2 GOL sing 199 n n 
O2 HO2 GOL sing 200 n n 
C3 O3 GOL sing 201 n n 
C3 H31 GOL sing 202 n n 
C3 H32 GOL sing 203 n n 
O3 HO3 GOL sing 204 n n 
#
_atom_sites.entry_id                     2PT9 
_atom_sites.fract_transf_matrix[1][1]    0.005096 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000404 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007457 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 S4M A 1 501 501 S4M S4M . 
E 3 2MH A 1 401 401 2MH M2H . 
F 4 1PG A 1 701 701 1PG 1PG . 
G 5 GOL A 1 603 603 GOL GOL . 
H 6 SO4 B 1 604 604 SO4 SO4 . 
I 2 S4M B 1 502 502 S4M S4M . 
J 3 2MH B 1 402 402 2MH M2H . 
K 5 GOL B 1 601 601 GOL GOL . 
L 2 S4M C 1 503 503 S4M S4M . 
M 3 2MH C 1 403 403 2MH M2H . 
N 4 1PG C 1 702 702 1PG 1PG . 
O 5 GOL C 1 602 602 GOL GOL . 
P 7 HOH A 1 702 1 HOH HOH . 
P 7 HOH A 2 703 6 HOH HOH . 
P 7 HOH A 3 704 28 HOH HOH . 
P 7 HOH A 4 705 30 HOH HOH . 
P 7 HOH A 5 706 32 HOH HOH . 
P 7 HOH A 6 707 33 HOH HOH . 
P 7 HOH A 7 708 37 HOH HOH . 
P 7 HOH A 8 709 39 HOH HOH . 
P 7 HOH A 9 710 44 HOH HOH . 
P 7 HOH A 10 711 49 HOH HOH . 
P 7 HOH A 11 712 50 HOH HOH . 
P 7 HOH A 12 713 56 HOH HOH . 
P 7 HOH A 13 714 60 HOH HOH . 
P 7 HOH A 14 715 76 HOH HOH . 
P 7 HOH A 15 716 77 HOH HOH . 
P 7 HOH A 16 717 79 HOH HOH . 
P 7 HOH A 17 718 84 HOH HOH . 
P 7 HOH A 18 719 87 HOH HOH . 
P 7 HOH A 19 720 97 HOH HOH . 
P 7 HOH A 20 721 100 HOH HOH . 
P 7 HOH A 21 722 101 HOH HOH . 
P 7 HOH A 22 723 108 HOH HOH . 
P 7 HOH A 23 724 121 HOH HOH . 
P 7 HOH A 24 725 123 HOH HOH . 
P 7 HOH A 25 726 126 HOH HOH . 
P 7 HOH A 26 727 127 HOH HOH . 
P 7 HOH A 27 728 131 HOH HOH . 
P 7 HOH A 28 729 136 HOH HOH . 
P 7 HOH A 29 730 140 HOH HOH . 
P 7 HOH A 30 731 142 HOH HOH . 
P 7 HOH A 31 732 144 HOH HOH . 
P 7 HOH A 32 733 145 HOH HOH . 
P 7 HOH A 33 734 149 HOH HOH . 
P 7 HOH A 34 735 150 HOH HOH . 
P 7 HOH A 35 736 155 HOH HOH . 
P 7 HOH A 36 737 157 HOH HOH . 
P 7 HOH A 37 738 158 HOH HOH . 
P 7 HOH A 38 739 166 HOH HOH . 
P 7 HOH A 39 740 167 HOH HOH . 
P 7 HOH A 40 741 169 HOH HOH . 
P 7 HOH A 41 742 170 HOH HOH . 
Q 7 HOH B 1 605 4 HOH HOH . 
Q 7 HOH B 2 606 5 HOH HOH . 
Q 7 HOH B 3 607 9 HOH HOH . 
Q 7 HOH B 4 608 10 HOH HOH . 
Q 7 HOH B 5 609 12 HOH HOH . 
Q 7 HOH B 6 610 17 HOH HOH . 
Q 7 HOH B 7 611 18 HOH HOH . 
Q 7 HOH B 8 612 21 HOH HOH . 
Q 7 HOH B 9 613 27 HOH HOH . 
Q 7 HOH B 10 614 29 HOH HOH . 
Q 7 HOH B 11 615 34 HOH HOH . 
Q 7 HOH B 12 616 35 HOH HOH . 
Q 7 HOH B 13 617 38 HOH HOH . 
Q 7 HOH B 14 618 41 HOH HOH . 
Q 7 HOH B 15 619 42 HOH HOH . 
Q 7 HOH B 16 620 46 HOH HOH . 
Q 7 HOH B 17 621 47 HOH HOH . 
Q 7 HOH B 18 622 48 HOH HOH . 
Q 7 HOH B 19 623 55 HOH HOH . 
Q 7 HOH B 20 624 58 HOH HOH . 
Q 7 HOH B 21 625 61 HOH HOH . 
Q 7 HOH B 22 626 64 HOH HOH . 
Q 7 HOH B 23 627 67 HOH HOH . 
Q 7 HOH B 24 628 68 HOH HOH . 
Q 7 HOH B 25 629 70 HOH HOH . 
Q 7 HOH B 26 630 78 HOH HOH . 
Q 7 HOH B 27 631 83 HOH HOH . 
Q 7 HOH B 28 632 89 HOH HOH . 
Q 7 HOH B 29 633 90 HOH HOH . 
Q 7 HOH B 30 634 92 HOH HOH . 
Q 7 HOH B 31 635 95 HOH HOH . 
Q 7 HOH B 32 636 96 HOH HOH . 
Q 7 HOH B 33 637 98 HOH HOH . 
Q 7 HOH B 34 638 104 HOH HOH . 
Q 7 HOH B 35 639 106 HOH HOH . 
Q 7 HOH B 36 640 109 HOH HOH . 
Q 7 HOH B 37 641 110 HOH HOH . 
Q 7 HOH B 38 642 111 HOH HOH . 
Q 7 HOH B 39 643 112 HOH HOH . 
Q 7 HOH B 40 644 113 HOH HOH . 
Q 7 HOH B 41 645 115 HOH HOH . 
Q 7 HOH B 42 646 116 HOH HOH . 
Q 7 HOH B 43 647 118 HOH HOH . 
Q 7 HOH B 44 648 120 HOH HOH . 
Q 7 HOH B 45 649 122 HOH HOH . 
Q 7 HOH B 46 650 129 HOH HOH . 
Q 7 HOH B 47 651 133 HOH HOH . 
Q 7 HOH B 48 652 134 HOH HOH . 
Q 7 HOH B 49 653 135 HOH HOH . 
Q 7 HOH B 50 654 138 HOH HOH . 
Q 7 HOH B 51 655 151 HOH HOH . 
Q 7 HOH B 52 656 153 HOH HOH . 
Q 7 HOH B 53 657 154 HOH HOH . 
Q 7 HOH B 54 658 156 HOH HOH . 
Q 7 HOH B 55 659 160 HOH HOH . 
Q 7 HOH B 56 660 161 HOH HOH . 
Q 7 HOH B 57 661 168 HOH HOH . 
Q 7 HOH B 58 662 172 HOH HOH . 
Q 7 HOH B 59 663 173 HOH HOH . 
R 7 HOH C 1 703 2 HOH HOH . 
R 7 HOH C 2 704 3 HOH HOH . 
R 7 HOH C 3 705 7 HOH HOH . 
R 7 HOH C 4 706 8 HOH HOH . 
R 7 HOH C 5 707 11 HOH HOH . 
R 7 HOH C 6 708 13 HOH HOH . 
R 7 HOH C 7 709 14 HOH HOH . 
R 7 HOH C 8 710 15 HOH HOH . 
R 7 HOH C 9 711 16 HOH HOH . 
R 7 HOH C 10 712 19 HOH HOH . 
R 7 HOH C 11 713 20 HOH HOH . 
R 7 HOH C 12 714 22 HOH HOH . 
R 7 HOH C 13 715 23 HOH HOH . 
R 7 HOH C 14 716 24 HOH HOH . 
R 7 HOH C 15 717 25 HOH HOH . 
R 7 HOH C 16 718 26 HOH HOH . 
R 7 HOH C 17 719 31 HOH HOH . 
R 7 HOH C 18 720 36 HOH HOH . 
R 7 HOH C 19 721 40 HOH HOH . 
R 7 HOH C 20 722 43 HOH HOH . 
R 7 HOH C 21 723 45 HOH HOH . 
R 7 HOH C 22 724 51 HOH HOH . 
R 7 HOH C 23 725 52 HOH HOH . 
R 7 HOH C 24 726 53 HOH HOH . 
R 7 HOH C 25 727 54 HOH HOH . 
R 7 HOH C 26 728 57 HOH HOH . 
R 7 HOH C 27 729 59 HOH HOH . 
R 7 HOH C 28 730 62 HOH HOH . 
R 7 HOH C 29 731 63 HOH HOH . 
R 7 HOH C 30 732 65 HOH HOH . 
R 7 HOH C 31 733 66 HOH HOH . 
R 7 HOH C 32 734 69 HOH HOH . 
R 7 HOH C 33 735 71 HOH HOH . 
R 7 HOH C 34 736 72 HOH HOH . 
R 7 HOH C 35 737 73 HOH HOH . 
R 7 HOH C 36 738 74 HOH HOH . 
R 7 HOH C 37 739 75 HOH HOH . 
R 7 HOH C 38 740 80 HOH HOH . 
R 7 HOH C 39 741 81 HOH HOH . 
R 7 HOH C 40 742 82 HOH HOH . 
R 7 HOH C 41 743 85 HOH HOH . 
R 7 HOH C 42 744 86 HOH HOH . 
R 7 HOH C 43 745 88 HOH HOH . 
R 7 HOH C 44 746 91 HOH HOH . 
R 7 HOH C 45 747 93 HOH HOH . 
R 7 HOH C 46 748 94 HOH HOH . 
R 7 HOH C 47 749 99 HOH HOH . 
R 7 HOH C 48 750 102 HOH HOH . 
R 7 HOH C 49 751 103 HOH HOH . 
R 7 HOH C 50 752 105 HOH HOH . 
R 7 HOH C 51 753 107 HOH HOH . 
R 7 HOH C 52 754 114 HOH HOH . 
R 7 HOH C 53 755 117 HOH HOH . 
R 7 HOH C 54 756 119 HOH HOH . 
R 7 HOH C 55 757 124 HOH HOH . 
R 7 HOH C 56 758 125 HOH HOH . 
R 7 HOH C 57 759 128 HOH HOH . 
R 7 HOH C 58 760 130 HOH HOH . 
R 7 HOH C 59 761 132 HOH HOH . 
R 7 HOH C 60 762 137 HOH HOH . 
R 7 HOH C 61 763 139 HOH HOH . 
R 7 HOH C 62 764 141 HOH HOH . 
R 7 HOH C 63 765 143 HOH HOH . 
R 7 HOH C 64 766 146 HOH HOH . 
R 7 HOH C 65 767 147 HOH HOH . 
R 7 HOH C 66 768 148 HOH HOH . 
R 7 HOH C 67 769 152 HOH HOH . 
R 7 HOH C 68 770 159 HOH HOH . 
R 7 HOH C 69 771 162 HOH HOH . 
R 7 HOH C 70 772 163 HOH HOH . 
R 7 HOH C 71 773 164 HOH HOH . 
R 7 HOH C 72 774 165 HOH HOH . 
R 7 HOH C 73 775 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 5 30.744 14.656 21.655 1 64.59 ? C1 GOL 601 B 1 
HETATM 2 O O1 GOL . . . K 5 29.683 15.357 22.264 1 63.18 ? O1 GOL 601 B 1 
HETATM 3 C C2 GOL . . . K 5 31.015 15.272 20.292 1 65.1 ? C2 GOL 601 B 1 
HETATM 4 O O2 GOL . . . K 5 29.917 16.089 19.951 1 65.32 ? O2 GOL 601 B 1 
HETATM 5 C C3 GOL . . . K 5 31.187 14.169 19.249 1 65.69 ? C3 GOL 601 B 1 
HETATM 6 O O3 GOL . . . K 5 31.929 14.653 18.145 1 65.3 ? O3 GOL 601 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#