data_2PTF # _model_server_result.job_id '_gxXFnMdEK0N4bEdLOsVKw' _model_server_result.datetime_utc '2025-02-25 10:57:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ptf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2PTF # _exptl.entry_id 2PTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PTF _cell.length_a 91.727 _cell.length_b 91.727 _cell.length_c 117.868 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2PTF _atom_sites.fract_transf_matrix[1][1] 0.010902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 301 FMN FMN . D 2 FMN B 1 301 301 FMN FMN . E 3 HOH A 1 302 2 HOH HOH . E 3 HOH A 2 303 3 HOH HOH . E 3 HOH A 3 304 4 HOH HOH . E 3 HOH A 4 305 5 HOH HOH . E 3 HOH A 5 306 7 HOH HOH . E 3 HOH A 6 307 10 HOH HOH . E 3 HOH A 7 308 12 HOH HOH . E 3 HOH A 8 309 15 HOH HOH . E 3 HOH A 9 310 18 HOH HOH . E 3 HOH A 10 311 19 HOH HOH . E 3 HOH A 11 312 20 HOH HOH . E 3 HOH A 12 313 27 HOH HOH . E 3 HOH A 13 314 29 HOH HOH . E 3 HOH A 14 315 31 HOH HOH . E 3 HOH A 15 316 38 HOH HOH . E 3 HOH A 16 317 39 HOH HOH . E 3 HOH A 17 318 42 HOH HOH . E 3 HOH A 18 319 44 HOH HOH . E 3 HOH A 19 320 45 HOH HOH . E 3 HOH A 20 321 46 HOH HOH . E 3 HOH A 21 322 48 HOH HOH . E 3 HOH A 22 323 50 HOH HOH . E 3 HOH A 23 324 51 HOH HOH . E 3 HOH A 24 325 52 HOH HOH . E 3 HOH A 25 326 53 HOH HOH . E 3 HOH A 26 327 58 HOH HOH . E 3 HOH A 27 328 64 HOH HOH . E 3 HOH A 28 329 66 HOH HOH . E 3 HOH A 29 330 76 HOH HOH . E 3 HOH A 30 331 85 HOH HOH . E 3 HOH A 31 332 98 HOH HOH . E 3 HOH A 32 333 100 HOH HOH . E 3 HOH A 33 334 104 HOH HOH . E 3 HOH A 34 335 105 HOH HOH . E 3 HOH A 35 336 113 HOH HOH . E 3 HOH A 36 337 116 HOH HOH . E 3 HOH A 37 338 119 HOH HOH . E 3 HOH A 38 339 121 HOH HOH . E 3 HOH A 39 340 124 HOH HOH . E 3 HOH A 40 341 150 HOH HOH . E 3 HOH A 41 342 177 HOH HOH . E 3 HOH A 42 343 211 HOH HOH . E 3 HOH A 43 344 242 HOH HOH . E 3 HOH A 44 345 243 HOH HOH . E 3 HOH A 45 346 249 HOH HOH . E 3 HOH A 46 347 250 HOH HOH . E 3 HOH A 47 348 253 HOH HOH . E 3 HOH A 48 349 254 HOH HOH . E 3 HOH A 49 350 257 HOH HOH . E 3 HOH A 50 351 258 HOH HOH . E 3 HOH A 51 352 259 HOH HOH . E 3 HOH A 52 353 260 HOH HOH . E 3 HOH A 53 354 263 HOH HOH . E 3 HOH A 54 355 265 HOH HOH . E 3 HOH A 55 356 266 HOH HOH . F 3 HOH B 1 302 1 HOH HOH . F 3 HOH B 2 303 6 HOH HOH . F 3 HOH B 3 304 8 HOH HOH . F 3 HOH B 4 305 9 HOH HOH . F 3 HOH B 5 306 11 HOH HOH . F 3 HOH B 6 307 13 HOH HOH . F 3 HOH B 7 308 14 HOH HOH . F 3 HOH B 8 309 16 HOH HOH . F 3 HOH B 9 310 17 HOH HOH . F 3 HOH B 10 311 21 HOH HOH . F 3 HOH B 11 312 22 HOH HOH . F 3 HOH B 12 313 24 HOH HOH . F 3 HOH B 13 314 26 HOH HOH . F 3 HOH B 14 315 32 HOH HOH . F 3 HOH B 15 316 34 HOH HOH . F 3 HOH B 16 317 35 HOH HOH . F 3 HOH B 17 318 36 HOH HOH . F 3 HOH B 18 319 40 HOH HOH . F 3 HOH B 19 320 43 HOH HOH . F 3 HOH B 20 321 49 HOH HOH . F 3 HOH B 21 322 54 HOH HOH . F 3 HOH B 22 323 56 HOH HOH . F 3 HOH B 23 324 57 HOH HOH . F 3 HOH B 24 325 59 HOH HOH . F 3 HOH B 25 326 61 HOH HOH . F 3 HOH B 26 327 68 HOH HOH . F 3 HOH B 27 328 71 HOH HOH . F 3 HOH B 28 329 72 HOH HOH . F 3 HOH B 29 330 73 HOH HOH . F 3 HOH B 30 331 75 HOH HOH . F 3 HOH B 31 332 78 HOH HOH . F 3 HOH B 32 333 79 HOH HOH . F 3 HOH B 33 334 87 HOH HOH . F 3 HOH B 34 335 90 HOH HOH . F 3 HOH B 35 336 94 HOH HOH . F 3 HOH B 36 337 96 HOH HOH . F 3 HOH B 37 338 101 HOH HOH . F 3 HOH B 38 339 118 HOH HOH . F 3 HOH B 39 340 125 HOH HOH . F 3 HOH B 40 341 128 HOH HOH . F 3 HOH B 41 342 136 HOH HOH . F 3 HOH B 42 343 155 HOH HOH . F 3 HOH B 43 344 161 HOH HOH . F 3 HOH B 44 345 170 HOH HOH . F 3 HOH B 45 346 172 HOH HOH . F 3 HOH B 46 347 176 HOH HOH . F 3 HOH B 47 348 188 HOH HOH . F 3 HOH B 48 349 193 HOH HOH . F 3 HOH B 49 350 206 HOH HOH . F 3 HOH B 50 351 237 HOH HOH . F 3 HOH B 51 352 241 HOH HOH . F 3 HOH B 52 353 244 HOH HOH . F 3 HOH B 53 354 245 HOH HOH . F 3 HOH B 54 355 246 HOH HOH . F 3 HOH B 55 356 247 HOH HOH . F 3 HOH B 56 357 248 HOH HOH . F 3 HOH B 57 358 251 HOH HOH . F 3 HOH B 58 359 252 HOH HOH . F 3 HOH B 59 360 255 HOH HOH . F 3 HOH B 60 361 256 HOH HOH . F 3 HOH B 61 362 261 HOH HOH . F 3 HOH B 62 363 262 HOH HOH . F 3 HOH B 63 364 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 38.572 14.99 38.254 1 31.79 ? N1 FMN 301 B 1 HETATM 2 C C2 FMN . . . D 2 39.216 14.005 37.535 1 31.72 ? C2 FMN 301 B 1 HETATM 3 O O2 FMN . . . D 2 40.237 13.491 37.987 1 31.07 ? O2 FMN 301 B 1 HETATM 4 N N3 FMN . . . D 2 38.725 13.599 36.299 1 30.63 ? N3 FMN 301 B 1 HETATM 5 C C4 FMN . . . D 2 37.609 14.179 35.777 1 30.56 ? C4 FMN 301 B 1 HETATM 6 O O4 FMN . . . D 2 37.071 13.604 34.823 1 29.19 ? O4 FMN 301 B 1 HETATM 7 C C4A FMN . . . D 2 36.952 15.197 36.501 1 31.26 ? C4A FMN 301 B 1 HETATM 8 N N5 FMN . . . D 2 35.814 15.794 36.001 1 31.8 ? N5 FMN 301 B 1 HETATM 9 C C5A FMN . . . D 2 35.161 16.802 36.683 1 32.97 ? C5A FMN 301 B 1 HETATM 10 C C6 FMN . . . D 2 34.001 17.372 36.143 1 31.34 ? C6 FMN 301 B 1 HETATM 11 C C7 FMN . . . D 2 33.334 18.388 36.877 1 31.87 ? C7 FMN 301 B 1 HETATM 12 C C7M FMN . . . D 2 31.996 18.939 36.38 1 28.39 ? C7M FMN 301 B 1 HETATM 13 C C8 FMN . . . D 2 33.854 18.796 38.116 1 30.46 ? C8 FMN 301 B 1 HETATM 14 C C8M FMN . . . D 2 33.166 19.806 38.96 1 31.64 ? C8M FMN 301 B 1 HETATM 15 C C9 FMN . . . D 2 34.995 18.227 38.636 1 30.61 ? C9 FMN 301 B 1 HETATM 16 C C9A FMN . . . D 2 35.647 17.217 37.945 1 31.44 ? C9A FMN 301 B 1 HETATM 17 N N10 FMN . . . D 2 36.765 16.627 38.473 1 31.59 ? N10 FMN 301 B 1 HETATM 18 C C10 FMN . . . D 2 37.424 15.61 37.753 1 32.16 ? C10 FMN 301 B 1 HETATM 19 C C1' FMN . . . D 2 37.391 17.216 39.717 1 34.19 ? C1' FMN 301 B 1 HETATM 20 C C2' FMN . . . D 2 37.007 16.325 40.915 1 36.81 ? C2' FMN 301 B 1 HETATM 21 O O2' FMN . . . D 2 35.616 16.099 40.974 1 35.09 ? O2' FMN 301 B 1 HETATM 22 C C3' FMN . . . D 2 37.503 16.884 42.261 1 37.36 ? C3' FMN 301 B 1 HETATM 23 O O3' FMN . . . D 2 38.92 16.859 42.256 1 33.94 ? O3' FMN 301 B 1 HETATM 24 C C4' FMN . . . D 2 36.903 16.223 43.507 1 37.05 ? C4' FMN 301 B 1 HETATM 25 O O4' FMN . . . D 2 37.271 17.051 44.587 1 44.13 ? O4' FMN 301 B 1 HETATM 26 C C5' FMN . . . D 2 37.454 14.827 43.801 1 40.4 ? C5' FMN 301 B 1 HETATM 27 O O5' FMN . . . D 2 36.962 14.355 45.044 1 37.82 ? O5' FMN 301 B 1 HETATM 28 P P FMN . . . D 2 37.594 13.037 45.752 1 32.93 ? P FMN 301 B 1 HETATM 29 O O1P FMN . . . D 2 38.893 13.469 46.493 1 40.02 ? O1P FMN 301 B 1 HETATM 30 O O2P FMN . . . D 2 37.81 11.972 44.703 1 36.86 ? O2P FMN 301 B 1 HETATM 31 O O3P FMN . . . D 2 36.44 12.571 46.591 1 31.37 ? O3P FMN 301 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #