data_2PTM # _model_server_result.job_id 5_WmfsaZofv3dfFvAU-WpQ _model_server_result.datetime_utc '2024-10-12 04:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ptm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 2PTM # _exptl.entry_id 2PTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PTM _cell.length_a 92.354 _cell.length_b 92.354 _cell.length_c 63.646 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 92.354 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 46.177 46.177 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -46.177 46.177 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 274 n n CO N2 NCO sing 275 n n CO N3 NCO sing 276 n n CO N4 NCO sing 277 n n CO N5 NCO sing 278 n n CO N6 NCO sing 279 n n N1 HN11 NCO sing 280 n n N1 HN12 NCO sing 281 n n N1 HN13 NCO sing 282 n n N2 HN21 NCO sing 283 n n N2 HN22 NCO sing 284 n n N2 HN23 NCO sing 285 n n N3 HN31 NCO sing 286 n n N3 HN32 NCO sing 287 n n N3 HN33 NCO sing 288 n n N4 HN41 NCO sing 289 n n N4 HN42 NCO sing 290 n n N4 HN43 NCO sing 291 n n N5 HN51 NCO sing 292 n n N5 HN52 NCO sing 293 n n N5 HN53 NCO sing 294 n n N6 HN61 NCO sing 295 n n N6 HN62 NCO sing 296 n n N6 HN63 NCO sing 297 n n # _atom_sites.entry_id 2PTM _atom_sites.fract_transf_matrix[1][1] 0.010828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO A 1 301 301 NCO NCO . C 3 CMP A 1 401 401 CMP CMP . D 4 HOH A 1 0 0 HOH HOH . D 4 HOH A 2 1 1 HOH HOH . D 4 HOH A 3 2 2 HOH HOH . D 4 HOH A 4 3 3 HOH HOH . D 4 HOH A 5 4 4 HOH HOH . D 4 HOH A 6 5 5 HOH HOH . D 4 HOH A 7 6 6 HOH HOH . D 4 HOH A 8 7 7 HOH HOH . D 4 HOH A 9 8 8 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 32 32 HOH HOH . D 4 HOH A 32 33 33 HOH HOH . D 4 HOH A 33 34 34 HOH HOH . D 4 HOH A 34 35 35 HOH HOH . D 4 HOH A 35 36 36 HOH HOH . D 4 HOH A 36 37 37 HOH HOH . D 4 HOH A 37 39 39 HOH HOH . D 4 HOH A 38 40 40 HOH HOH . D 4 HOH A 39 41 41 HOH HOH . D 4 HOH A 40 42 42 HOH HOH . D 4 HOH A 41 44 44 HOH HOH . D 4 HOH A 42 45 45 HOH HOH . D 4 HOH A 43 46 46 HOH HOH . D 4 HOH A 44 47 47 HOH HOH . D 4 HOH A 45 48 48 HOH HOH . D 4 HOH A 46 49 49 HOH HOH . D 4 HOH A 47 50 50 HOH HOH . D 4 HOH A 48 51 51 HOH HOH . D 4 HOH A 49 52 52 HOH HOH . D 4 HOH A 50 53 53 HOH HOH . D 4 HOH A 51 54 54 HOH HOH . D 4 HOH A 52 55 55 HOH HOH . D 4 HOH A 53 56 56 HOH HOH . D 4 HOH A 54 57 57 HOH HOH . D 4 HOH A 55 58 58 HOH HOH . D 4 HOH A 56 59 59 HOH HOH . D 4 HOH A 57 60 60 HOH HOH . D 4 HOH A 58 61 61 HOH HOH . D 4 HOH A 59 62 62 HOH HOH . D 4 HOH A 60 63 63 HOH HOH . D 4 HOH A 61 64 64 HOH HOH . D 4 HOH A 62 65 65 HOH HOH . D 4 HOH A 63 66 66 HOH HOH . D 4 HOH A 64 67 67 HOH HOH . D 4 HOH A 65 68 68 HOH HOH . D 4 HOH A 66 69 69 HOH HOH . D 4 HOH A 67 70 70 HOH HOH . D 4 HOH A 68 71 71 HOH HOH . D 4 HOH A 69 72 72 HOH HOH . D 4 HOH A 70 73 73 HOH HOH . D 4 HOH A 71 74 74 HOH HOH . D 4 HOH A 72 75 75 HOH HOH . D 4 HOH A 73 76 76 HOH HOH . D 4 HOH A 74 77 77 HOH HOH . D 4 HOH A 75 78 78 HOH HOH . D 4 HOH A 76 79 79 HOH HOH . D 4 HOH A 77 80 80 HOH HOH . D 4 HOH A 78 81 81 HOH HOH . D 4 HOH A 79 82 82 HOH HOH . D 4 HOH A 80 83 83 HOH HOH . D 4 HOH A 81 84 84 HOH HOH . D 4 HOH A 82 85 85 HOH HOH . D 4 HOH A 83 86 86 HOH HOH . D 4 HOH A 84 87 87 HOH HOH . D 4 HOH A 85 88 88 HOH HOH . D 4 HOH A 86 89 89 HOH HOH . D 4 HOH A 87 90 90 HOH HOH . D 4 HOH A 88 91 91 HOH HOH . D 4 HOH A 89 92 92 HOH HOH . D 4 HOH A 90 93 93 HOH HOH . D 4 HOH A 91 95 95 HOH HOH . D 4 HOH A 92 96 96 HOH HOH . D 4 HOH A 93 97 97 HOH HOH . D 4 HOH A 94 98 98 HOH HOH . D 4 HOH A 95 99 99 HOH HOH . D 4 HOH A 96 100 100 HOH HOH . D 4 HOH A 97 101 101 HOH HOH . D 4 HOH A 98 103 103 HOH HOH . D 4 HOH A 99 104 104 HOH HOH . D 4 HOH A 100 105 105 HOH HOH . D 4 HOH A 101 106 106 HOH HOH . D 4 HOH A 102 108 108 HOH HOH . D 4 HOH A 103 110 110 HOH HOH . D 4 HOH A 104 113 113 HOH HOH . D 4 HOH A 105 114 114 HOH HOH . D 4 HOH A 106 115 115 HOH HOH . D 4 HOH A 107 116 116 HOH HOH . D 4 HOH A 108 117 117 HOH HOH . D 4 HOH A 109 118 118 HOH HOH . D 4 HOH A 110 119 119 HOH HOH . D 4 HOH A 111 120 120 HOH HOH . D 4 HOH A 112 121 121 HOH HOH . D 4 HOH A 113 122 122 HOH HOH . D 4 HOH A 114 125 125 HOH HOH . D 4 HOH A 115 126 126 HOH HOH . D 4 HOH A 116 127 127 HOH HOH . D 4 HOH A 117 128 128 HOH HOH . D 4 HOH A 118 130 130 HOH HOH . D 4 HOH A 119 131 131 HOH HOH . D 4 HOH A 120 132 132 HOH HOH . D 4 HOH A 121 133 133 HOH HOH . D 4 HOH A 122 134 134 HOH HOH . D 4 HOH A 123 135 135 HOH HOH . D 4 HOH A 124 136 136 HOH HOH . D 4 HOH A 125 137 137 HOH HOH . D 4 HOH A 126 138 138 HOH HOH . D 4 HOH A 127 139 139 HOH HOH . D 4 HOH A 128 140 140 HOH HOH . D 4 HOH A 129 141 141 HOH HOH . D 4 HOH A 130 142 142 HOH HOH . D 4 HOH A 131 143 143 HOH HOH . D 4 HOH A 132 145 145 HOH HOH . D 4 HOH A 133 146 146 HOH HOH . D 4 HOH A 134 147 147 HOH HOH . D 4 HOH A 135 148 148 HOH HOH . D 4 HOH A 136 149 149 HOH HOH . D 4 HOH A 137 150 150 HOH HOH . D 4 HOH A 138 151 151 HOH HOH . D 4 HOH A 139 152 152 HOH HOH . D 4 HOH A 140 153 153 HOH HOH . D 4 HOH A 141 156 156 HOH HOH . D 4 HOH A 142 157 157 HOH HOH . D 4 HOH A 143 159 159 HOH HOH . D 4 HOH A 144 161 161 HOH HOH . D 4 HOH A 145 162 162 HOH HOH . D 4 HOH A 146 163 163 HOH HOH . D 4 HOH A 147 164 164 HOH HOH . D 4 HOH A 148 165 165 HOH HOH . D 4 HOH A 149 166 166 HOH HOH . D 4 HOH A 150 168 168 HOH HOH . D 4 HOH A 151 169 169 HOH HOH . D 4 HOH A 152 170 170 HOH HOH . D 4 HOH A 153 171 171 HOH HOH . D 4 HOH A 154 172 172 HOH HOH . D 4 HOH A 155 174 174 HOH HOH . D 4 HOH A 156 177 177 HOH HOH . D 4 HOH A 157 178 178 HOH HOH . D 4 HOH A 158 179 179 HOH HOH . D 4 HOH A 159 180 180 HOH HOH . D 4 HOH A 160 182 182 HOH HOH . D 4 HOH A 161 184 184 HOH HOH . D 4 HOH A 162 186 186 HOH HOH . D 4 HOH A 163 188 188 HOH HOH . D 4 HOH A 164 189 189 HOH HOH . D 4 HOH A 165 190 190 HOH HOH . D 4 HOH A 166 191 191 HOH HOH . D 4 HOH A 167 192 192 HOH HOH . D 4 HOH A 168 193 193 HOH HOH . D 4 HOH A 169 195 195 HOH HOH . D 4 HOH A 170 196 196 HOH HOH . D 4 HOH A 171 197 197 HOH HOH . D 4 HOH A 172 198 198 HOH HOH . D 4 HOH A 173 201 201 HOH HOH . D 4 HOH A 174 202 202 HOH HOH . D 4 HOH A 175 204 204 HOH HOH . D 4 HOH A 176 208 208 HOH HOH . D 4 HOH A 177 209 209 HOH HOH . D 4 HOH A 178 211 211 HOH HOH . D 4 HOH A 179 212 212 HOH HOH . D 4 HOH A 180 213 213 HOH HOH . D 4 HOH A 181 219 219 HOH HOH . D 4 HOH A 182 221 221 HOH HOH . D 4 HOH A 183 222 222 HOH HOH . D 4 HOH A 184 223 223 HOH HOH . D 4 HOH A 185 224 224 HOH HOH . D 4 HOH A 186 226 226 HOH HOH . D 4 HOH A 187 228 228 HOH HOH . D 4 HOH A 188 229 229 HOH HOH . D 4 HOH A 189 230 230 HOH HOH . D 4 HOH A 190 233 233 HOH HOH . D 4 HOH A 191 235 235 HOH HOH . D 4 HOH A 192 236 236 HOH HOH . D 4 HOH A 193 241 241 HOH HOH . D 4 HOH A 194 243 243 HOH HOH . D 4 HOH A 195 246 246 HOH HOH . D 4 HOH A 196 247 247 HOH HOH . D 4 HOH A 197 248 248 HOH HOH . D 4 HOH A 198 249 249 HOH HOH . D 4 HOH A 199 250 250 HOH HOH . D 4 HOH A 200 252 252 HOH HOH . D 4 HOH A 201 253 253 HOH HOH . D 4 HOH A 202 257 257 HOH HOH . D 4 HOH A 203 260 260 HOH HOH . D 4 HOH A 204 262 262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . B 2 28.586 38.252 -11.079 0.5 17.76 ? CO NCO 301 A 1 HETATM 2 N N1 NCO . . . B 2 27.122 37.517 -12.481 1 37.97 ? N1 NCO 301 A 1 HETATM 3 N N2 NCO . . . B 2 30.162 37.937 -12.534 1 30.3 ? N2 NCO 301 A 1 HETATM 4 N N3 NCO . . . B 2 28.401 40.389 -11.667 1 33.66 ? N3 NCO 301 A 1 HETATM 5 N N4 NCO . . . B 2 28.887 36.059 -10.259 1 23.55 ? N4 NCO 301 A 1 HETATM 6 N N5 NCO . . . B 2 30.076 38.925 -9.659 1 40.36 ? N5 NCO 301 A 1 HETATM 7 N N6 NCO . . . B 2 26.927 38.543 -9.623 1 30.63 ? N6 NCO 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #