data_2PTM # _model_server_result.job_id yqFiTVJNC8a3QGrLagIeSQ _model_server_result.datetime_utc '2024-10-12 04:33:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ptm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 2PTM # _exptl.entry_id 2PTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PTM _cell.length_a 92.354 _cell.length_b 92.354 _cell.length_c 63.646 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 92.354 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 46.177 46.177 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -46.177 46.177 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 2PTM _atom_sites.fract_transf_matrix[1][1] 0.010828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO A 1 301 301 NCO NCO . C 3 CMP A 1 401 401 CMP CMP . D 4 HOH A 1 0 0 HOH HOH . D 4 HOH A 2 1 1 HOH HOH . D 4 HOH A 3 2 2 HOH HOH . D 4 HOH A 4 3 3 HOH HOH . D 4 HOH A 5 4 4 HOH HOH . D 4 HOH A 6 5 5 HOH HOH . D 4 HOH A 7 6 6 HOH HOH . D 4 HOH A 8 7 7 HOH HOH . D 4 HOH A 9 8 8 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 32 32 HOH HOH . D 4 HOH A 32 33 33 HOH HOH . D 4 HOH A 33 34 34 HOH HOH . D 4 HOH A 34 35 35 HOH HOH . D 4 HOH A 35 36 36 HOH HOH . D 4 HOH A 36 37 37 HOH HOH . D 4 HOH A 37 39 39 HOH HOH . D 4 HOH A 38 40 40 HOH HOH . D 4 HOH A 39 41 41 HOH HOH . D 4 HOH A 40 42 42 HOH HOH . D 4 HOH A 41 44 44 HOH HOH . D 4 HOH A 42 45 45 HOH HOH . D 4 HOH A 43 46 46 HOH HOH . D 4 HOH A 44 47 47 HOH HOH . D 4 HOH A 45 48 48 HOH HOH . D 4 HOH A 46 49 49 HOH HOH . D 4 HOH A 47 50 50 HOH HOH . D 4 HOH A 48 51 51 HOH HOH . D 4 HOH A 49 52 52 HOH HOH . D 4 HOH A 50 53 53 HOH HOH . D 4 HOH A 51 54 54 HOH HOH . D 4 HOH A 52 55 55 HOH HOH . D 4 HOH A 53 56 56 HOH HOH . D 4 HOH A 54 57 57 HOH HOH . D 4 HOH A 55 58 58 HOH HOH . D 4 HOH A 56 59 59 HOH HOH . D 4 HOH A 57 60 60 HOH HOH . D 4 HOH A 58 61 61 HOH HOH . D 4 HOH A 59 62 62 HOH HOH . D 4 HOH A 60 63 63 HOH HOH . D 4 HOH A 61 64 64 HOH HOH . D 4 HOH A 62 65 65 HOH HOH . D 4 HOH A 63 66 66 HOH HOH . D 4 HOH A 64 67 67 HOH HOH . D 4 HOH A 65 68 68 HOH HOH . D 4 HOH A 66 69 69 HOH HOH . D 4 HOH A 67 70 70 HOH HOH . D 4 HOH A 68 71 71 HOH HOH . D 4 HOH A 69 72 72 HOH HOH . D 4 HOH A 70 73 73 HOH HOH . D 4 HOH A 71 74 74 HOH HOH . D 4 HOH A 72 75 75 HOH HOH . D 4 HOH A 73 76 76 HOH HOH . D 4 HOH A 74 77 77 HOH HOH . D 4 HOH A 75 78 78 HOH HOH . D 4 HOH A 76 79 79 HOH HOH . D 4 HOH A 77 80 80 HOH HOH . D 4 HOH A 78 81 81 HOH HOH . D 4 HOH A 79 82 82 HOH HOH . D 4 HOH A 80 83 83 HOH HOH . D 4 HOH A 81 84 84 HOH HOH . D 4 HOH A 82 85 85 HOH HOH . D 4 HOH A 83 86 86 HOH HOH . D 4 HOH A 84 87 87 HOH HOH . D 4 HOH A 85 88 88 HOH HOH . D 4 HOH A 86 89 89 HOH HOH . D 4 HOH A 87 90 90 HOH HOH . D 4 HOH A 88 91 91 HOH HOH . D 4 HOH A 89 92 92 HOH HOH . D 4 HOH A 90 93 93 HOH HOH . D 4 HOH A 91 95 95 HOH HOH . D 4 HOH A 92 96 96 HOH HOH . D 4 HOH A 93 97 97 HOH HOH . D 4 HOH A 94 98 98 HOH HOH . D 4 HOH A 95 99 99 HOH HOH . D 4 HOH A 96 100 100 HOH HOH . D 4 HOH A 97 101 101 HOH HOH . D 4 HOH A 98 103 103 HOH HOH . D 4 HOH A 99 104 104 HOH HOH . D 4 HOH A 100 105 105 HOH HOH . D 4 HOH A 101 106 106 HOH HOH . D 4 HOH A 102 108 108 HOH HOH . D 4 HOH A 103 110 110 HOH HOH . D 4 HOH A 104 113 113 HOH HOH . D 4 HOH A 105 114 114 HOH HOH . D 4 HOH A 106 115 115 HOH HOH . D 4 HOH A 107 116 116 HOH HOH . D 4 HOH A 108 117 117 HOH HOH . D 4 HOH A 109 118 118 HOH HOH . D 4 HOH A 110 119 119 HOH HOH . D 4 HOH A 111 120 120 HOH HOH . D 4 HOH A 112 121 121 HOH HOH . D 4 HOH A 113 122 122 HOH HOH . D 4 HOH A 114 125 125 HOH HOH . D 4 HOH A 115 126 126 HOH HOH . D 4 HOH A 116 127 127 HOH HOH . D 4 HOH A 117 128 128 HOH HOH . D 4 HOH A 118 130 130 HOH HOH . D 4 HOH A 119 131 131 HOH HOH . D 4 HOH A 120 132 132 HOH HOH . D 4 HOH A 121 133 133 HOH HOH . D 4 HOH A 122 134 134 HOH HOH . D 4 HOH A 123 135 135 HOH HOH . D 4 HOH A 124 136 136 HOH HOH . D 4 HOH A 125 137 137 HOH HOH . D 4 HOH A 126 138 138 HOH HOH . D 4 HOH A 127 139 139 HOH HOH . D 4 HOH A 128 140 140 HOH HOH . D 4 HOH A 129 141 141 HOH HOH . D 4 HOH A 130 142 142 HOH HOH . D 4 HOH A 131 143 143 HOH HOH . D 4 HOH A 132 145 145 HOH HOH . D 4 HOH A 133 146 146 HOH HOH . D 4 HOH A 134 147 147 HOH HOH . D 4 HOH A 135 148 148 HOH HOH . D 4 HOH A 136 149 149 HOH HOH . D 4 HOH A 137 150 150 HOH HOH . D 4 HOH A 138 151 151 HOH HOH . D 4 HOH A 139 152 152 HOH HOH . D 4 HOH A 140 153 153 HOH HOH . D 4 HOH A 141 156 156 HOH HOH . D 4 HOH A 142 157 157 HOH HOH . D 4 HOH A 143 159 159 HOH HOH . D 4 HOH A 144 161 161 HOH HOH . D 4 HOH A 145 162 162 HOH HOH . D 4 HOH A 146 163 163 HOH HOH . D 4 HOH A 147 164 164 HOH HOH . D 4 HOH A 148 165 165 HOH HOH . D 4 HOH A 149 166 166 HOH HOH . D 4 HOH A 150 168 168 HOH HOH . D 4 HOH A 151 169 169 HOH HOH . D 4 HOH A 152 170 170 HOH HOH . D 4 HOH A 153 171 171 HOH HOH . D 4 HOH A 154 172 172 HOH HOH . D 4 HOH A 155 174 174 HOH HOH . D 4 HOH A 156 177 177 HOH HOH . D 4 HOH A 157 178 178 HOH HOH . D 4 HOH A 158 179 179 HOH HOH . D 4 HOH A 159 180 180 HOH HOH . D 4 HOH A 160 182 182 HOH HOH . D 4 HOH A 161 184 184 HOH HOH . D 4 HOH A 162 186 186 HOH HOH . D 4 HOH A 163 188 188 HOH HOH . D 4 HOH A 164 189 189 HOH HOH . D 4 HOH A 165 190 190 HOH HOH . D 4 HOH A 166 191 191 HOH HOH . D 4 HOH A 167 192 192 HOH HOH . D 4 HOH A 168 193 193 HOH HOH . D 4 HOH A 169 195 195 HOH HOH . D 4 HOH A 170 196 196 HOH HOH . D 4 HOH A 171 197 197 HOH HOH . D 4 HOH A 172 198 198 HOH HOH . D 4 HOH A 173 201 201 HOH HOH . D 4 HOH A 174 202 202 HOH HOH . D 4 HOH A 175 204 204 HOH HOH . D 4 HOH A 176 208 208 HOH HOH . D 4 HOH A 177 209 209 HOH HOH . D 4 HOH A 178 211 211 HOH HOH . D 4 HOH A 179 212 212 HOH HOH . D 4 HOH A 180 213 213 HOH HOH . D 4 HOH A 181 219 219 HOH HOH . D 4 HOH A 182 221 221 HOH HOH . D 4 HOH A 183 222 222 HOH HOH . D 4 HOH A 184 223 223 HOH HOH . D 4 HOH A 185 224 224 HOH HOH . D 4 HOH A 186 226 226 HOH HOH . D 4 HOH A 187 228 228 HOH HOH . D 4 HOH A 188 229 229 HOH HOH . D 4 HOH A 189 230 230 HOH HOH . D 4 HOH A 190 233 233 HOH HOH . D 4 HOH A 191 235 235 HOH HOH . D 4 HOH A 192 236 236 HOH HOH . D 4 HOH A 193 241 241 HOH HOH . D 4 HOH A 194 243 243 HOH HOH . D 4 HOH A 195 246 246 HOH HOH . D 4 HOH A 196 247 247 HOH HOH . D 4 HOH A 197 248 248 HOH HOH . D 4 HOH A 198 249 249 HOH HOH . D 4 HOH A 199 250 250 HOH HOH . D 4 HOH A 200 252 252 HOH HOH . D 4 HOH A 201 253 253 HOH HOH . D 4 HOH A 202 257 257 HOH HOH . D 4 HOH A 203 260 260 HOH HOH . D 4 HOH A 204 262 262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 3 23.664 35.454 21.768 1 21.46 ? P CMP 401 A 1 HETATM 2 O O1P CMP . . . C 3 24.416 35.998 23.023 1 23.37 ? O1P CMP 401 A 1 HETATM 3 O O2P CMP . . . C 3 22.236 35.713 21.672 1 20.5 ? O2P CMP 401 A 1 HETATM 4 O O5' CMP . . . C 3 24.599 36.012 20.584 1 22.44 ? O5' CMP 401 A 1 HETATM 5 C C5' CMP . . . C 3 25.802 35.432 20.138 1 20.34 ? C5' CMP 401 A 1 HETATM 6 C C4' CMP . . . C 3 25.717 33.917 20.012 1 20.81 ? C4' CMP 401 A 1 HETATM 7 O O4' CMP . . . C 3 26.957 33.222 19.941 1 20.78 ? O4' CMP 401 A 1 HETATM 8 C C3' CMP . . . C 3 25.162 33.392 21.314 1 20.3 ? C3' CMP 401 A 1 HETATM 9 O O3' CMP . . . C 3 23.953 33.86 21.806 1 23.86 ? O3' CMP 401 A 1 HETATM 10 C C2' CMP . . . C 3 25.319 31.872 21.252 1 21.94 ? C2' CMP 401 A 1 HETATM 11 O O2' CMP . . . C 3 24.372 31.35 20.331 1 22.16 ? O2' CMP 401 A 1 HETATM 12 C C1' CMP . . . C 3 26.676 31.877 20.468 1 17.03 ? C1' CMP 401 A 1 HETATM 13 N N9 CMP . . . C 3 27.777 31.499 21.306 1 24.48 ? N9 CMP 401 A 1 HETATM 14 C C8 CMP . . . C 3 28.422 32.24 22.328 1 29.79 ? C8 CMP 401 A 1 HETATM 15 N N7 CMP . . . C 3 29.457 31.578 22.872 1 26.9 ? N7 CMP 401 A 1 HETATM 16 C C5 CMP . . . C 3 29.493 30.346 22.209 1 30.34 ? C5 CMP 401 A 1 HETATM 17 C C6 CMP . . . C 3 30.312 29.184 22.305 1 30.95 ? C6 CMP 401 A 1 HETATM 18 N N6 CMP . . . C 3 31.353 29.134 23.197 1 35.47 ? N6 CMP 401 A 1 HETATM 19 N N1 CMP . . . C 3 30.047 28.119 21.489 1 27.4 ? N1 CMP 401 A 1 HETATM 20 C C2 CMP . . . C 3 29.028 28.209 20.605 1 34.91 ? C2 CMP 401 A 1 HETATM 21 N N3 CMP . . . C 3 28.175 29.234 20.391 1 24.67 ? N3 CMP 401 A 1 HETATM 22 C C4 CMP . . . C 3 28.449 30.285 21.201 1 28.98 ? C4 CMP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #