data_2PUB # _model_server_result.job_id FAL5ZNa6RLXTFII3-yzxPg _model_server_result.datetime_utc '2024-12-04 06:02:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":599}' # _entry.id 2PUB # _exptl.entry_id 2PUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PUB _cell.length_a 175.81 _cell.length_b 94.87 _cell.length_c 81.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 2 B DA 700 1_555 A N3 DT 17 B DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 2 B DA 700 1_555 A O4 DT 17 B DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 3 B DC 701 1_555 A N1 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 3 B DC 701 1_555 A O6 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 3 B DC 701 1_555 A N2 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 4 B DG 702 1_555 A N3 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 4 B DG 702 1_555 A O2 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 4 B DG 702 1_555 A N4 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 5 B DC 703 1_555 A N1 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 5 B DC 703 1_555 A O6 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 5 B DC 703 1_555 A N2 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 B DA 704 1_555 A N3 DT 13 B DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 B DA 704 1_555 A O4 DT 13 B DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 7 B DA 705 1_555 A N3 DT 12 B DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 7 B DA 705 1_555 A O4 DT 12 B DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 8 B DA 706 1_555 A N3 DT 11 B DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 8 B DA 706 1_555 A O4 DT 11 B DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 9 B DC 707 1_555 A N1 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 9 B DC 707 1_555 A O6 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 9 B DC 707 1_555 A N2 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 10 B DG 708 1_555 A N3 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 10 B DG 708 1_555 A O2 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 10 B DG 708 1_555 A N4 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DT 11 B DT 709 1_555 A N1 DA 8 B DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O4 DT 11 B DT 709 1_555 A N6 DA 8 B DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DT 12 B DT 710 1_555 A N1 DA 7 B DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 DT 12 B DT 710 1_555 A N6 DA 7 B DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 DT 13 B DT 711 1_555 A N1 DA 6 B DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O4 DT 13 B DT 711 1_555 A N6 DA 6 B DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 14 B DG 712 1_555 A N3 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 14 B DG 712 1_555 A O2 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 14 B DG 712 1_555 A N4 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DC 15 B DC 713 1_555 A N1 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N4 DC 15 B DC 713 1_555 A O6 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O2 DC 15 B DC 713 1_555 A N2 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DG 16 B DG 714 1_555 A N3 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 DG 16 B DG 714 1_555 A O2 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 DG 16 B DG 714 1_555 A N4 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N3 DT 17 B DT 715 1_555 A N1 DA 2 B DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O4 DT 17 B DT 715 1_555 A N6 DA 2 B DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 2PUB _atom_sites.fract_transf_matrix[1][1] 0.005688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADE A 1 599 599 ADE AD2 . D 4 HOH B 1 743 743 HOH HOH . D 4 HOH B 2 765 765 HOH HOH . D 4 HOH B 3 771 771 HOH HOH . D 4 HOH B 4 789 789 HOH HOH . E 4 HOH A 1 718 718 HOH HOH . E 4 HOH A 2 719 719 HOH HOH . E 4 HOH A 3 722 722 HOH HOH . E 4 HOH A 4 723 723 HOH HOH . E 4 HOH A 5 724 724 HOH HOH . E 4 HOH A 6 728 728 HOH HOH . E 4 HOH A 7 731 731 HOH HOH . E 4 HOH A 8 732 732 HOH HOH . E 4 HOH A 9 733 733 HOH HOH . E 4 HOH A 10 737 737 HOH HOH . E 4 HOH A 11 738 738 HOH HOH . E 4 HOH A 12 739 739 HOH HOH . E 4 HOH A 13 741 741 HOH HOH . E 4 HOH A 14 742 742 HOH HOH . E 4 HOH A 15 744 744 HOH HOH . E 4 HOH A 16 746 746 HOH HOH . E 4 HOH A 17 747 747 HOH HOH . E 4 HOH A 18 752 752 HOH HOH . E 4 HOH A 19 753 753 HOH HOH . E 4 HOH A 20 754 754 HOH HOH . E 4 HOH A 21 755 755 HOH HOH . E 4 HOH A 22 758 758 HOH HOH . E 4 HOH A 23 760 760 HOH HOH . E 4 HOH A 24 761 761 HOH HOH . E 4 HOH A 25 763 763 HOH HOH . E 4 HOH A 26 764 764 HOH HOH . E 4 HOH A 27 766 766 HOH HOH . E 4 HOH A 28 767 767 HOH HOH . E 4 HOH A 29 768 768 HOH HOH . E 4 HOH A 30 769 769 HOH HOH . E 4 HOH A 31 770 770 HOH HOH . E 4 HOH A 32 773 773 HOH HOH . E 4 HOH A 33 774 774 HOH HOH . E 4 HOH A 34 775 775 HOH HOH . E 4 HOH A 35 776 776 HOH HOH . E 4 HOH A 36 777 777 HOH HOH . E 4 HOH A 37 778 778 HOH HOH . E 4 HOH A 38 779 779 HOH HOH . E 4 HOH A 39 782 782 HOH HOH . E 4 HOH A 40 783 783 HOH HOH . E 4 HOH A 41 784 784 HOH HOH . E 4 HOH A 42 785 785 HOH HOH . E 4 HOH A 43 786 786 HOH HOH . E 4 HOH A 44 787 787 HOH HOH . E 4 HOH A 45 788 788 HOH HOH . E 4 HOH A 46 791 791 HOH HOH . E 4 HOH A 47 792 792 HOH HOH . E 4 HOH A 48 796 796 HOH HOH . E 4 HOH A 49 798 798 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . C 3 58.578 5.955 -10.133 1 46.11 ? N9 ADE 599 A 1 HETATM 2 C C8 ADE . . . C 3 58.126 6.631 -11.235 1 28.34 ? C8 ADE 599 A 1 HETATM 3 N N7 ADE . . . C 3 57.337 5.915 -11.985 1 33.49 ? N7 ADE 599 A 1 HETATM 4 C C5 ADE . . . C 3 57.281 4.675 -11.368 1 45.65 ? C5 ADE 599 A 1 HETATM 5 C C6 ADE . . . C 3 56.597 3.482 -11.712 1 34.13 ? C6 ADE 599 A 1 HETATM 6 N N6 ADE . . . C 3 55.795 3.278 -12.755 1 39.3 ? N6 ADE 599 A 1 HETATM 7 N N1 ADE . . . C 3 56.833 2.451 -10.816 1 46.69 ? N1 ADE 599 A 1 HETATM 8 C C2 ADE . . . C 3 57.623 2.562 -9.705 1 41.2 ? C2 ADE 599 A 1 HETATM 9 N N3 ADE . . . C 3 58.256 3.674 -9.356 1 26.62 ? N3 ADE 599 A 1 HETATM 10 C C4 ADE . . . C 3 58.055 4.686 -10.231 1 38.28 ? C4 ADE 599 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #