data_2PUD
#
_model_server_result.job_id            s2ywte4hSz1gkt3UQHXejQ 
_model_server_result.datetime_utc      '2024-11-02 04:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":599}' 
#
_entry.id    2PUD 
#
_exptl.entry_id    2PUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              136.111 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HYPOXANTHINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PUD 
_cell.length_a            175.93 
_cell.length_b            95.02 
_cell.length_c            81.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N1 DA 2 B DA 700 1_555 A N3 DT 17 B DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N6 DA 2 B DA 700 1_555 A O4 DT 17 B DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N3 DC 3 B DC 701 1_555 A N1 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N4 DC 3 B DC 701 1_555 A O6 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O2 DC 3 B DC 701 1_555 A N2 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 DG 4 B DG 702 1_555 A N3 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N2 DG 4 B DG 702 1_555 A O2 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O6 DG 4 B DG 702 1_555 A N4 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N3 DC 5 B DC 703 1_555 A N1 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N4 DC 5 B DC 703 1_555 A O6 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O2 DC 5 B DC 703 1_555 A N2 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 DA 6 B DA 704 1_555 A N3 DT 13 B DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N6 DA 6 B DA 704 1_555 A O4 DT 13 B DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DA 7 B DA 705 1_555 A N3 DT 12 B DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N6 DA 7 B DA 705 1_555 A O4 DT 12 B DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DA 8 B DA 706 1_555 A N3 DT 11 B DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N6 DA 8 B DA 706 1_555 A O4 DT 11 B DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 DC 9 B DC 707 1_555 A N1 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N4 DC 9 B DC 707 1_555 A O6 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O2 DC 9 B DC 707 1_555 A N2 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N1 DG 10 B DG 708 1_555 A N3 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N2 DG 10 B DG 708 1_555 A O2 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O6 DG 10 B DG 708 1_555 A N4 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 DT 11 B DT 709 1_555 A N1 DA 8 B DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A O4 DT 11 B DT 709 1_555 A N6 DA 8 B DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A N3 DT 12 B DT 710 1_555 A N1 DA 7 B DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A O4 DT 12 B DT 710 1_555 A N6 DA 7 B DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A N3 DT 13 B DT 711 1_555 A N1 DA 6 B DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A O4 DT 13 B DT 711 1_555 A N6 DA 6 B DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A N1 DG 14 B DG 712 1_555 A N3 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 A N2 DG 14 B DG 712 1_555 A O2 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 A O6 DG 14 B DG 712 1_555 A N4 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 A N3 DC 15 B DC 713 1_555 A N1 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 A N4 DC 15 B DC 713 1_555 A O6 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 A O2 DC 15 B DC 713 1_555 A N2 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 A N1 DG 16 B DG 714 1_555 A N3 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 A N2 DG 16 B DG 714 1_555 A O2 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog38 A O6 DG 16 B DG 714 1_555 A N4 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 A N3 DT 17 B DT 715 1_555 A N1 DA 2 B DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 A O4 DT 17 B DT 715 1_555 A N6 DA 2 B DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C5 H4 N4 O' 
_chem_comp.formula_weight    136.111 
_chem_comp.id                HPA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HYPOXANTHINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 HPA sing 301 n y 
N1 C6 HPA sing 302 n y 
N1 HN1 HPA sing 303 n n 
C2 N3 HPA doub 304 n y 
C2 H2 HPA sing 305 n n 
N3 C4 HPA sing 306 n y 
C4 C5 HPA doub 307 n y 
C4 N9 HPA sing 308 n y 
C5 C6 HPA sing 309 n y 
C5 N7 HPA sing 310 n y 
C6 O6 HPA doub 311 n n 
N7 C8 HPA sing 312 n y 
N7 HN7 HPA sing 313 n n 
C8 N9 HPA doub 314 n y 
C8 H8 HPA sing 315 n n 
#
_atom_sites.entry_id                     2PUD 
_atom_sites.fract_transf_matrix[1][1]    0.005684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010524 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HPA A 1 599 599 HPA HPA . 
D 4 HOH B 1 745 745 HOH HOH . 
D 4 HOH B 2 783 783 HOH HOH . 
D 4 HOH B 3 805 805 HOH HOH . 
D 4 HOH B 4 828 828 HOH HOH . 
D 4 HOH B 5 839 839 HOH HOH . 
E 4 HOH A 1 718 718 HOH HOH . 
E 4 HOH A 2 719 719 HOH HOH . 
E 4 HOH A 3 720 720 HOH HOH . 
E 4 HOH A 4 721 721 HOH HOH . 
E 4 HOH A 5 722 722 HOH HOH . 
E 4 HOH A 6 723 723 HOH HOH . 
E 4 HOH A 7 725 725 HOH HOH . 
E 4 HOH A 8 726 726 HOH HOH . 
E 4 HOH A 9 730 730 HOH HOH . 
E 4 HOH A 10 731 731 HOH HOH . 
E 4 HOH A 11 733 733 HOH HOH . 
E 4 HOH A 12 735 735 HOH HOH . 
E 4 HOH A 13 737 737 HOH HOH . 
E 4 HOH A 14 738 738 HOH HOH . 
E 4 HOH A 15 741 741 HOH HOH . 
E 4 HOH A 16 742 742 HOH HOH . 
E 4 HOH A 17 743 743 HOH HOH . 
E 4 HOH A 18 744 744 HOH HOH . 
E 4 HOH A 19 746 746 HOH HOH . 
E 4 HOH A 20 748 748 HOH HOH . 
E 4 HOH A 21 755 755 HOH HOH . 
E 4 HOH A 22 757 757 HOH HOH . 
E 4 HOH A 23 759 759 HOH HOH . 
E 4 HOH A 24 760 760 HOH HOH . 
E 4 HOH A 25 763 763 HOH HOH . 
E 4 HOH A 26 765 765 HOH HOH . 
E 4 HOH A 27 767 767 HOH HOH . 
E 4 HOH A 28 770 770 HOH HOH . 
E 4 HOH A 29 771 771 HOH HOH . 
E 4 HOH A 30 773 773 HOH HOH . 
E 4 HOH A 31 776 776 HOH HOH . 
E 4 HOH A 32 777 777 HOH HOH . 
E 4 HOH A 33 778 778 HOH HOH . 
E 4 HOH A 34 779 779 HOH HOH . 
E 4 HOH A 35 780 780 HOH HOH . 
E 4 HOH A 36 781 781 HOH HOH . 
E 4 HOH A 37 786 786 HOH HOH . 
E 4 HOH A 38 787 787 HOH HOH . 
E 4 HOH A 39 789 789 HOH HOH . 
E 4 HOH A 40 790 790 HOH HOH . 
E 4 HOH A 41 796 796 HOH HOH . 
E 4 HOH A 42 798 798 HOH HOH . 
E 4 HOH A 43 801 801 HOH HOH . 
E 4 HOH A 44 803 803 HOH HOH . 
E 4 HOH A 45 804 804 HOH HOH . 
E 4 HOH A 46 807 807 HOH HOH . 
E 4 HOH A 47 815 815 HOH HOH . 
E 4 HOH A 48 820 820 HOH HOH . 
E 4 HOH A 49 822 822 HOH HOH . 
E 4 HOH A 50 830 830 HOH HOH . 
E 4 HOH A 51 831 831 HOH HOH . 
E 4 HOH A 52 832 832 HOH HOH . 
E 4 HOH A 53 834 834 HOH HOH . 
E 4 HOH A 54 837 837 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HPA . . . C 3 57.107 2.689 -10.795 1 60.9 ? N1 HPA 599 A 1 
HETATM 2 C C2 HPA . . . C 3 58.005 2.812 -9.761 1 42.65 ? C2 HPA 599 A 1 
HETATM 3 N N3 HPA . . . C 3 58.647 3.931 -9.467 1 30.61 ? N3 HPA 599 A 1 
HETATM 4 C C4 HPA . . . C 3 58.332 4.939 -10.31 1 39.3 ? C4 HPA 599 A 1 
HETATM 5 C C5 HPA . . . C 3 57.451 4.917 -11.363 1 45.05 ? C5 HPA 599 A 1 
HETATM 6 C C6 HPA . . . C 3 56.767 3.713 -11.668 1 24.95 ? C6 HPA 599 A 1 
HETATM 7 O O6 HPA . . . C 3 55.939 3.484 -12.554 1 62.14 ? O6 HPA 599 A 1 
HETATM 8 N N7 HPA . . . C 3 57.452 6.144 -12.004 1 32.97 ? N7 HPA 599 A 1 
HETATM 9 C C8 HPA . . . C 3 58.28 6.877 -11.32 1 29.04 ? C8 HPA 599 A 1 
HETATM 10 N N9 HPA . . . C 3 58.852 6.209 -10.271 1 34.96 ? N9 HPA 599 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#