data_2PUJ # _model_server_result.job_id ihD391AacBuXmkYhNPgMBQ _model_server_result.datetime_utc '2024-11-12 23:15:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2puj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":287}' # _entry.id 2PUJ # _exptl.entry_id 2PUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PUJ _cell.length_a 116.805 _cell.length_b 116.805 _cell.length_c 87.528 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 105 A ARG 105 4_454 B NA NA . A NA 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc2 B NA NA . A NA 287 1_555 C O7 MLI . A MLI 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc3 B NA NA . A NA 287 1_555 C O9 MLI . A MLI 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 B NA NA . A NA 287 1_555 E O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 B NA NA . A NA 287 1_555 E O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PUJ _atom_sites.fract_transf_matrix[1][1] 0.008561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 287 200 NA NA . C 3 MLI A 1 288 201 MLI MLI . D 4 HPZ A 1 289 202 HPZ HPZ . E 5 HOH A 1 290 1 HOH HOH . E 5 HOH A 2 291 2 HOH HOH . E 5 HOH A 3 292 3 HOH HOH . E 5 HOH A 4 293 4 HOH HOH . E 5 HOH A 5 294 5 HOH HOH . E 5 HOH A 6 295 6 HOH HOH . E 5 HOH A 7 296 7 HOH HOH . E 5 HOH A 8 297 8 HOH HOH . E 5 HOH A 9 298 9 HOH HOH . E 5 HOH A 10 299 10 HOH HOH . E 5 HOH A 11 300 11 HOH HOH . E 5 HOH A 12 301 12 HOH HOH . E 5 HOH A 13 302 13 HOH HOH . E 5 HOH A 14 303 14 HOH HOH . E 5 HOH A 15 304 15 HOH HOH . E 5 HOH A 16 305 16 HOH HOH . E 5 HOH A 17 306 17 HOH HOH . E 5 HOH A 18 307 18 HOH HOH . E 5 HOH A 19 308 19 HOH HOH . E 5 HOH A 20 309 20 HOH HOH . E 5 HOH A 21 310 21 HOH HOH . E 5 HOH A 22 311 22 HOH HOH . E 5 HOH A 23 312 23 HOH HOH . E 5 HOH A 24 313 24 HOH HOH . E 5 HOH A 25 314 25 HOH HOH . E 5 HOH A 26 315 26 HOH HOH . E 5 HOH A 27 316 27 HOH HOH . E 5 HOH A 28 317 28 HOH HOH . E 5 HOH A 29 318 29 HOH HOH . E 5 HOH A 30 319 30 HOH HOH . E 5 HOH A 31 320 31 HOH HOH . E 5 HOH A 32 321 32 HOH HOH . E 5 HOH A 33 322 33 HOH HOH . E 5 HOH A 34 323 34 HOH HOH . E 5 HOH A 35 324 35 HOH HOH . E 5 HOH A 36 325 36 HOH HOH . E 5 HOH A 37 326 37 HOH HOH . E 5 HOH A 38 327 38 HOH HOH . E 5 HOH A 39 328 39 HOH HOH . E 5 HOH A 40 329 40 HOH HOH . E 5 HOH A 41 330 41 HOH HOH . E 5 HOH A 42 331 42 HOH HOH . E 5 HOH A 43 332 43 HOH HOH . E 5 HOH A 44 333 44 HOH HOH . E 5 HOH A 45 334 45 HOH HOH . E 5 HOH A 46 335 46 HOH HOH . E 5 HOH A 47 336 47 HOH HOH . E 5 HOH A 48 337 48 HOH HOH . E 5 HOH A 49 338 49 HOH HOH . E 5 HOH A 50 339 50 HOH HOH . E 5 HOH A 51 340 51 HOH HOH . E 5 HOH A 52 341 52 HOH HOH . E 5 HOH A 53 342 53 HOH HOH . E 5 HOH A 54 343 54 HOH HOH . E 5 HOH A 55 344 55 HOH HOH . E 5 HOH A 56 345 56 HOH HOH . E 5 HOH A 57 346 57 HOH HOH . E 5 HOH A 58 347 58 HOH HOH . E 5 HOH A 59 348 59 HOH HOH . E 5 HOH A 60 349 60 HOH HOH . E 5 HOH A 61 350 61 HOH HOH . E 5 HOH A 62 351 62 HOH HOH . E 5 HOH A 63 352 63 HOH HOH . E 5 HOH A 64 353 64 HOH HOH . E 5 HOH A 65 354 65 HOH HOH . E 5 HOH A 66 355 66 HOH HOH . E 5 HOH A 67 356 67 HOH HOH . E 5 HOH A 68 357 68 HOH HOH . E 5 HOH A 69 358 69 HOH HOH . E 5 HOH A 70 359 70 HOH HOH . E 5 HOH A 71 360 71 HOH HOH . E 5 HOH A 72 361 72 HOH HOH . E 5 HOH A 73 362 73 HOH HOH . E 5 HOH A 74 363 74 HOH HOH . E 5 HOH A 75 364 75 HOH HOH . E 5 HOH A 76 365 76 HOH HOH . E 5 HOH A 77 366 77 HOH HOH . E 5 HOH A 78 367 78 HOH HOH . E 5 HOH A 79 368 79 HOH HOH . E 5 HOH A 80 369 80 HOH HOH . E 5 HOH A 81 370 81 HOH HOH . E 5 HOH A 82 371 82 HOH HOH . E 5 HOH A 83 372 83 HOH HOH . E 5 HOH A 84 373 84 HOH HOH . E 5 HOH A 85 374 85 HOH HOH . E 5 HOH A 86 375 86 HOH HOH . E 5 HOH A 87 376 87 HOH HOH . E 5 HOH A 88 377 88 HOH HOH . E 5 HOH A 89 378 89 HOH HOH . E 5 HOH A 90 379 90 HOH HOH . E 5 HOH A 91 380 91 HOH HOH . E 5 HOH A 92 381 92 HOH HOH . E 5 HOH A 93 382 93 HOH HOH . E 5 HOH A 94 383 94 HOH HOH . E 5 HOH A 95 384 95 HOH HOH . E 5 HOH A 96 385 96 HOH HOH . E 5 HOH A 97 386 97 HOH HOH . E 5 HOH A 98 387 98 HOH HOH . E 5 HOH A 99 388 99 HOH HOH . E 5 HOH A 100 389 100 HOH HOH . E 5 HOH A 101 390 101 HOH HOH . E 5 HOH A 102 391 102 HOH HOH . E 5 HOH A 103 392 103 HOH HOH . E 5 HOH A 104 393 104 HOH HOH . E 5 HOH A 105 394 105 HOH HOH . E 5 HOH A 106 395 106 HOH HOH . E 5 HOH A 107 396 107 HOH HOH . E 5 HOH A 108 397 108 HOH HOH . E 5 HOH A 109 398 109 HOH HOH . E 5 HOH A 110 399 110 HOH HOH . E 5 HOH A 111 400 111 HOH HOH . E 5 HOH A 112 401 112 HOH HOH . E 5 HOH A 113 402 113 HOH HOH . E 5 HOH A 114 403 114 HOH HOH . E 5 HOH A 115 404 115 HOH HOH . E 5 HOH A 116 405 116 HOH HOH . E 5 HOH A 117 406 117 HOH HOH . E 5 HOH A 118 407 118 HOH HOH . E 5 HOH A 119 408 119 HOH HOH . E 5 HOH A 120 409 120 HOH HOH . E 5 HOH A 121 410 121 HOH HOH . E 5 HOH A 122 411 122 HOH HOH . E 5 HOH A 123 412 123 HOH HOH . E 5 HOH A 124 413 124 HOH HOH . E 5 HOH A 125 414 125 HOH HOH . E 5 HOH A 126 415 126 HOH HOH . E 5 HOH A 127 416 127 HOH HOH . E 5 HOH A 128 417 128 HOH HOH . E 5 HOH A 129 418 129 HOH HOH . E 5 HOH A 130 419 130 HOH HOH . E 5 HOH A 131 420 131 HOH HOH . E 5 HOH A 132 421 132 HOH HOH . E 5 HOH A 133 422 133 HOH HOH . E 5 HOH A 134 423 134 HOH HOH . E 5 HOH A 135 424 135 HOH HOH . E 5 HOH A 136 425 136 HOH HOH . E 5 HOH A 137 426 137 HOH HOH . E 5 HOH A 138 427 138 HOH HOH . E 5 HOH A 139 428 139 HOH HOH . E 5 HOH A 140 429 140 HOH HOH . E 5 HOH A 141 430 141 HOH HOH . E 5 HOH A 142 431 142 HOH HOH . E 5 HOH A 143 432 143 HOH HOH . E 5 HOH A 144 433 144 HOH HOH . E 5 HOH A 145 434 145 HOH HOH . E 5 HOH A 146 435 146 HOH HOH . E 5 HOH A 147 436 147 HOH HOH . E 5 HOH A 148 437 148 HOH HOH . E 5 HOH A 149 438 149 HOH HOH . E 5 HOH A 150 439 150 HOH HOH . E 5 HOH A 151 440 151 HOH HOH . E 5 HOH A 152 441 152 HOH HOH . E 5 HOH A 153 442 153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -21.919 _atom_site.Cartn_y 7.355 _atom_site.Cartn_z -26.463 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 287 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #