data_2PUP # _model_server_result.job_id UHKVYfLVyWcpTM2UTalbMw _model_server_result.datetime_utc '2024-12-02 12:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 2PUP # _exptl.entry_id 2PUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PUP _cell.length_a 213.93 _cell.length_b 83.29 _cell.length_c 51.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -213.93 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 250 A ASP 250 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 A OD1 ASP 250 A ASP 250 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc3 A OD2 ASP 250 A ASP 250 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A OE1 GLU 252 A GLU 252 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 C MG MG . A MG 400 1_555 E O2B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc6 D MG MG . A MG 401 1_555 E O2A ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 D MG MG . A MG 401 1_555 E O3B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc8 B OD2 ASP 250 B ASP 250 1_555 F MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc9 B OD1 ASP 250 B ASP 250 1_555 F MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc10 B OD2 ASP 250 B ASP 250 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc11 B OE1 GLU 252 B GLU 252 1_555 F MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc12 F MG MG . B MG 400 1_555 H O1 PO4 . B PO4 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc13 F MG MG . B MG 400 1_555 H O2 PO4 . B PO4 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc14 F MG MG . B MG 400 1_555 J O2B ADP . B ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc15 G MG MG . B MG 401 1_555 H O2 PO4 . B PO4 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc16 G MG MG . B MG 401 1_555 J O2A ADP . B ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc17 G MG MG . B MG 401 1_555 J O3B ADP . B ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PUP _atom_sites.fract_transf_matrix[1][1] 0.004674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 400 400 MG MG . D 2 MG A 1 401 401 MG MG . E 3 ADP A 1 999 999 ADP ADP . F 2 MG B 1 400 400 MG MG . G 2 MG B 1 401 401 MG MG . H 4 PO4 B 1 998 998 PO4 PO4 . I 5 CPS B 1 777 777 CPS CPS . J 3 ADP B 1 999 999 ADP ADP . K 6 HOH A 1 1000 1 HOH HOH . K 6 HOH A 2 1001 6 HOH HOH . K 6 HOH A 3 1002 7 HOH HOH . K 6 HOH A 4 1003 9 HOH HOH . K 6 HOH A 5 1004 10 HOH HOH . K 6 HOH A 6 1005 13 HOH HOH . K 6 HOH A 7 1006 14 HOH HOH . K 6 HOH A 8 1007 15 HOH HOH . K 6 HOH A 9 1008 23 HOH HOH . K 6 HOH A 10 1009 26 HOH HOH . K 6 HOH A 11 1010 28 HOH HOH . K 6 HOH A 12 1011 29 HOH HOH . K 6 HOH A 13 1012 33 HOH HOH . K 6 HOH A 14 1013 37 HOH HOH . K 6 HOH A 15 1014 42 HOH HOH . K 6 HOH A 16 1015 44 HOH HOH . K 6 HOH A 17 1016 49 HOH HOH . K 6 HOH A 18 1017 50 HOH HOH . K 6 HOH A 19 1018 52 HOH HOH . K 6 HOH A 20 1019 53 HOH HOH . K 6 HOH A 21 1020 60 HOH HOH . K 6 HOH A 22 1021 61 HOH HOH . K 6 HOH A 23 1022 65 HOH HOH . K 6 HOH A 24 1023 66 HOH HOH . K 6 HOH A 25 1024 67 HOH HOH . K 6 HOH A 26 1025 68 HOH HOH . K 6 HOH A 27 1026 70 HOH HOH . K 6 HOH A 28 1027 72 HOH HOH . K 6 HOH A 29 1028 73 HOH HOH . K 6 HOH A 30 1029 74 HOH HOH . K 6 HOH A 31 1030 81 HOH HOH . K 6 HOH A 32 1031 82 HOH HOH . K 6 HOH A 33 1032 84 HOH HOH . K 6 HOH A 34 1033 85 HOH HOH . K 6 HOH A 35 1034 86 HOH HOH . K 6 HOH A 36 1035 88 HOH HOH . K 6 HOH A 37 1036 89 HOH HOH . K 6 HOH A 38 1037 91 HOH HOH . K 6 HOH A 39 1038 92 HOH HOH . K 6 HOH A 40 1039 93 HOH HOH . K 6 HOH A 41 1040 95 HOH HOH . K 6 HOH A 42 1041 97 HOH HOH . K 6 HOH A 43 1042 98 HOH HOH . K 6 HOH A 44 1043 100 HOH HOH . K 6 HOH A 45 1044 102 HOH HOH . K 6 HOH A 46 1045 105 HOH HOH . K 6 HOH A 47 1046 106 HOH HOH . K 6 HOH A 48 1047 108 HOH HOH . K 6 HOH A 49 1048 111 HOH HOH . K 6 HOH A 50 1049 112 HOH HOH . K 6 HOH A 51 1050 113 HOH HOH . K 6 HOH A 52 1051 114 HOH HOH . K 6 HOH A 53 1052 117 HOH HOH . K 6 HOH A 54 1053 118 HOH HOH . K 6 HOH A 55 1054 120 HOH HOH . K 6 HOH A 56 1055 124 HOH HOH . K 6 HOH A 57 1056 125 HOH HOH . K 6 HOH A 58 1057 129 HOH HOH . K 6 HOH A 59 1058 133 HOH HOH . K 6 HOH A 60 1059 137 HOH HOH . K 6 HOH A 61 1060 138 HOH HOH . K 6 HOH A 62 1061 139 HOH HOH . K 6 HOH A 63 1062 148 HOH HOH . K 6 HOH A 64 1063 150 HOH HOH . K 6 HOH A 65 1064 151 HOH HOH . K 6 HOH A 66 1065 156 HOH HOH . K 6 HOH A 67 1066 157 HOH HOH . K 6 HOH A 68 1067 158 HOH HOH . K 6 HOH A 69 1068 159 HOH HOH . K 6 HOH A 70 1069 160 HOH HOH . K 6 HOH A 71 1070 161 HOH HOH . K 6 HOH A 72 1071 162 HOH HOH . K 6 HOH A 73 1072 164 HOH HOH . K 6 HOH A 74 1073 165 HOH HOH . K 6 HOH A 75 1074 168 HOH HOH . K 6 HOH A 76 1075 174 HOH HOH . K 6 HOH A 77 1076 178 HOH HOH . K 6 HOH A 78 1077 179 HOH HOH . K 6 HOH A 79 1078 180 HOH HOH . K 6 HOH A 80 1079 181 HOH HOH . K 6 HOH A 81 1080 185 HOH HOH . K 6 HOH A 82 1081 187 HOH HOH . K 6 HOH A 83 1082 188 HOH HOH . K 6 HOH A 84 1083 189 HOH HOH . K 6 HOH A 85 1084 190 HOH HOH . K 6 HOH A 86 1085 191 HOH HOH . K 6 HOH A 87 1086 192 HOH HOH . K 6 HOH A 88 1087 194 HOH HOH . K 6 HOH A 89 1088 195 HOH HOH . K 6 HOH A 90 1089 196 HOH HOH . K 6 HOH A 91 1090 198 HOH HOH . K 6 HOH A 92 1091 199 HOH HOH . K 6 HOH A 93 1092 200 HOH HOH . K 6 HOH A 94 1093 208 HOH HOH . K 6 HOH A 95 1094 209 HOH HOH . K 6 HOH A 96 1095 212 HOH HOH . K 6 HOH A 97 1096 215 HOH HOH . K 6 HOH A 98 1097 216 HOH HOH . K 6 HOH A 99 1098 218 HOH HOH . K 6 HOH A 100 1099 219 HOH HOH . K 6 HOH A 101 1100 220 HOH HOH . K 6 HOH A 102 1101 221 HOH HOH . K 6 HOH A 103 1102 226 HOH HOH . K 6 HOH A 104 1103 227 HOH HOH . K 6 HOH A 105 1104 230 HOH HOH . K 6 HOH A 106 1105 231 HOH HOH . K 6 HOH A 107 1106 232 HOH HOH . L 6 HOH B 1 1000 2 HOH HOH . L 6 HOH B 2 1001 3 HOH HOH . L 6 HOH B 3 1002 4 HOH HOH . L 6 HOH B 4 1003 5 HOH HOH . L 6 HOH B 5 1004 8 HOH HOH . L 6 HOH B 6 1005 11 HOH HOH . L 6 HOH B 7 1006 12 HOH HOH . L 6 HOH B 8 1007 16 HOH HOH . L 6 HOH B 9 1008 17 HOH HOH . L 6 HOH B 10 1009 18 HOH HOH . L 6 HOH B 11 1010 19 HOH HOH . L 6 HOH B 12 1011 20 HOH HOH . L 6 HOH B 13 1012 21 HOH HOH . L 6 HOH B 14 1013 22 HOH HOH . L 6 HOH B 15 1014 24 HOH HOH . L 6 HOH B 16 1015 25 HOH HOH . L 6 HOH B 17 1016 27 HOH HOH . L 6 HOH B 18 1017 30 HOH HOH . L 6 HOH B 19 1018 31 HOH HOH . L 6 HOH B 20 1019 32 HOH HOH . L 6 HOH B 21 1020 34 HOH HOH . L 6 HOH B 22 1021 35 HOH HOH . L 6 HOH B 23 1022 36 HOH HOH . L 6 HOH B 24 1023 38 HOH HOH . L 6 HOH B 25 1024 39 HOH HOH . L 6 HOH B 26 1025 40 HOH HOH . L 6 HOH B 27 1026 41 HOH HOH . L 6 HOH B 28 1027 43 HOH HOH . L 6 HOH B 29 1028 45 HOH HOH . L 6 HOH B 30 1029 46 HOH HOH . L 6 HOH B 31 1030 47 HOH HOH . L 6 HOH B 32 1031 48 HOH HOH . L 6 HOH B 33 1032 51 HOH HOH . L 6 HOH B 34 1033 54 HOH HOH . L 6 HOH B 35 1034 55 HOH HOH . L 6 HOH B 36 1035 56 HOH HOH . L 6 HOH B 37 1036 57 HOH HOH . L 6 HOH B 38 1037 58 HOH HOH . L 6 HOH B 39 1038 59 HOH HOH . L 6 HOH B 40 1039 62 HOH HOH . L 6 HOH B 41 1040 63 HOH HOH . L 6 HOH B 42 1041 64 HOH HOH . L 6 HOH B 43 1042 69 HOH HOH . L 6 HOH B 44 1043 71 HOH HOH . L 6 HOH B 45 1044 75 HOH HOH . L 6 HOH B 46 1045 76 HOH HOH . L 6 HOH B 47 1046 77 HOH HOH . L 6 HOH B 48 1047 78 HOH HOH . L 6 HOH B 49 1048 79 HOH HOH . L 6 HOH B 50 1049 80 HOH HOH . L 6 HOH B 51 1050 83 HOH HOH . L 6 HOH B 52 1051 87 HOH HOH . L 6 HOH B 53 1052 90 HOH HOH . L 6 HOH B 54 1053 94 HOH HOH . L 6 HOH B 55 1054 96 HOH HOH . L 6 HOH B 56 1055 99 HOH HOH . L 6 HOH B 57 1056 101 HOH HOH . L 6 HOH B 58 1057 103 HOH HOH . L 6 HOH B 59 1058 104 HOH HOH . L 6 HOH B 60 1059 107 HOH HOH . L 6 HOH B 61 1060 109 HOH HOH . L 6 HOH B 62 1061 110 HOH HOH . L 6 HOH B 63 1062 115 HOH HOH . L 6 HOH B 64 1063 116 HOH HOH . L 6 HOH B 65 1064 119 HOH HOH . L 6 HOH B 66 1065 121 HOH HOH . L 6 HOH B 67 1066 122 HOH HOH . L 6 HOH B 68 1067 123 HOH HOH . L 6 HOH B 69 1068 126 HOH HOH . L 6 HOH B 70 1069 127 HOH HOH . L 6 HOH B 71 1070 128 HOH HOH . L 6 HOH B 72 1071 130 HOH HOH . L 6 HOH B 73 1072 131 HOH HOH . L 6 HOH B 74 1073 132 HOH HOH . L 6 HOH B 75 1074 134 HOH HOH . L 6 HOH B 76 1075 135 HOH HOH . L 6 HOH B 77 1076 136 HOH HOH . L 6 HOH B 78 1077 140 HOH HOH . L 6 HOH B 79 1078 141 HOH HOH . L 6 HOH B 80 1079 142 HOH HOH . L 6 HOH B 81 1080 143 HOH HOH . L 6 HOH B 82 1081 144 HOH HOH . L 6 HOH B 83 1082 145 HOH HOH . L 6 HOH B 84 1083 146 HOH HOH . L 6 HOH B 85 1084 147 HOH HOH . L 6 HOH B 86 1085 149 HOH HOH . L 6 HOH B 87 1086 152 HOH HOH . L 6 HOH B 88 1087 153 HOH HOH . L 6 HOH B 89 1088 154 HOH HOH . L 6 HOH B 90 1089 155 HOH HOH . L 6 HOH B 91 1090 163 HOH HOH . L 6 HOH B 92 1091 166 HOH HOH . L 6 HOH B 93 1092 167 HOH HOH . L 6 HOH B 94 1093 169 HOH HOH . L 6 HOH B 95 1094 170 HOH HOH . L 6 HOH B 96 1095 171 HOH HOH . L 6 HOH B 97 1096 172 HOH HOH . L 6 HOH B 98 1097 173 HOH HOH . L 6 HOH B 99 1098 175 HOH HOH . L 6 HOH B 100 1099 176 HOH HOH . L 6 HOH B 101 1100 177 HOH HOH . L 6 HOH B 102 1101 182 HOH HOH . L 6 HOH B 103 1102 183 HOH HOH . L 6 HOH B 104 1103 184 HOH HOH . L 6 HOH B 105 1104 186 HOH HOH . L 6 HOH B 106 1105 193 HOH HOH . L 6 HOH B 107 1106 197 HOH HOH . L 6 HOH B 108 1107 201 HOH HOH . L 6 HOH B 109 1108 202 HOH HOH . L 6 HOH B 110 1109 203 HOH HOH . L 6 HOH B 111 1110 204 HOH HOH . L 6 HOH B 112 1111 205 HOH HOH . L 6 HOH B 113 1112 206 HOH HOH . L 6 HOH B 114 1113 207 HOH HOH . L 6 HOH B 115 1114 210 HOH HOH . L 6 HOH B 116 1115 211 HOH HOH . L 6 HOH B 117 1116 213 HOH HOH . L 6 HOH B 118 1117 214 HOH HOH . L 6 HOH B 119 1118 217 HOH HOH . L 6 HOH B 120 1119 222 HOH HOH . L 6 HOH B 121 1120 223 HOH HOH . L 6 HOH B 122 1121 224 HOH HOH . L 6 HOH B 123 1122 225 HOH HOH . L 6 HOH B 124 1123 228 HOH HOH . L 6 HOH B 125 1124 229 HOH HOH . L 6 HOH B 126 1125 233 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -72.562 _atom_site.Cartn_y -25.917 _atom_site.Cartn_z 14.125 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #