data_2PUU # _model_server_result.job_id r9NsBsAxm-Jjxw5dTk6xkg _model_server_result.datetime_utc '2024-10-20 20:42:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2puu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":391}' # _entry.id 2PUU # _exptl.entry_id 2PUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.723 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-TERT-BUTYL-2-(4-METHYLPHENYL)-3-{[({4-[6-(MORPHOLIN-4-YLMETHYL)PYRIDIN-3-YL]-1-NAPHTHYL}AMINO)CARBONYL]AMINO}-1H-PYRAZOL-2-IUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PUU _cell.length_a 65.908 _cell.length_b 74.722 _cell.length_c 78.245 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H39 N6 O2 1' _chem_comp.formula_weight 575.723 _chem_comp.id G2G _chem_comp.mon_nstd_flag . _chem_comp.name 5-TERT-BUTYL-2-(4-METHYLPHENYL)-3-{[({4-[6-(MORPHOLIN-4-YLMETHYL)PYRIDIN-3-YL]-1-NAPHTHYL}AMINO)CARBONYL]AMINO}-1H-PYRAZOL-2-IUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C1 G2G sing 83 n y C3 C7 G2G doub 84 n y C3 H3 G2G sing 85 n n C2 N7 G2G doub 86 n y C2 C10 G2G sing 87 n y C2 N1 G2G sing 88 n n N1 C24 G2G sing 89 n n N1 HN1 G2G sing 90 n n C7 C36 G2G sing 91 n y C7 H7 G2G sing 92 n n C8 C25 G2G sing 93 n y C8 C30 G2G doub 94 n y C8 H8 G2G sing 95 n n C10 C12 G2G doub 96 n y C10 H10 G2G sing 97 n n C25 N4 G2G sing 98 n n C25 C4 G2G doub 99 n y C26 C27 G2G doub 100 n y C26 C4 G2G sing 101 n y C26 H26 G2G sing 102 n n C27 C28 G2G sing 103 n y C27 H27 G2G sing 104 n n C9 N3 G2G sing 105 n n C9 C33 G2G sing 106 n n C9 H91 G2G sing 107 n n C9 H92 G2G sing 108 n n C12 C14 G2G sing 109 n n C12 N8 G2G sing 110 n y C13 C19 G2G sing 111 n y C13 N7 G2G sing 112 n y C13 C18 G2G doub 113 n y C14 C17 G2G sing 114 n n C14 C16 G2G sing 115 n n C14 C15 G2G sing 116 n n C15 H151 G2G sing 117 n n C15 H152 G2G sing 118 n n C15 H153 G2G sing 119 n n C16 H161 G2G sing 120 n n C16 H162 G2G sing 121 n n C16 H163 G2G sing 122 n n C17 H171 G2G sing 123 n n C17 H172 G2G sing 124 n n C17 H173 G2G sing 125 n n C18 C21 G2G sing 126 n y C18 H18 G2G sing 127 n n C19 C20 G2G doub 128 n y C19 H19 G2G sing 129 n n C20 C34 G2G sing 130 n y C20 H20 G2G sing 131 n n C21 C34 G2G doub 132 n y C21 H21 G2G sing 133 n n C22 C34 G2G sing 134 n n C22 H221 G2G sing 135 n n C22 H222 G2G sing 136 n n C22 H223 G2G sing 137 n n N7 N8 G2G sing 138 n y N8 HN8 G2G sing 139 n n C24 O1 G2G doub 140 n n C24 N4 G2G sing 141 n n N4 HN4 G2G sing 142 n n C4 C5 G2G sing 143 n y C5 C29 G2G sing 144 n y C5 C6 G2G doub 145 n y C6 C30 G2G sing 146 n y C6 C1 G2G sing 147 n y C28 C29 G2G doub 148 n y C28 H28 G2G sing 149 n n C29 H29 G2G sing 150 n n C30 H30 G2G sing 151 n n C37 C1 G2G doub 152 n y C37 N2 G2G sing 153 n y C37 H37 G2G sing 154 n n C36 N2 G2G doub 155 n y C36 C23 G2G sing 156 n n C23 N3 G2G sing 157 n n C23 H231 G2G sing 158 n n C23 H232 G2G sing 159 n n N3 C31 G2G sing 160 n n C31 C32 G2G sing 161 n n C31 H311 G2G sing 162 n n C31 H312 G2G sing 163 n n C32 O2 G2G sing 164 n n C32 H321 G2G sing 165 n n C32 H322 G2G sing 166 n n C33 O2 G2G sing 167 n n C33 H331 G2G sing 168 n n C33 H332 G2G sing 169 n n # _atom_sites.entry_id 2PUU _atom_sites.fract_transf_matrix[1][1] 0.015173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G2G A 1 391 391 G2G G2G . C 3 HOH A 1 392 1 HOH TIP . C 3 HOH A 2 393 2 HOH TIP . C 3 HOH A 3 394 3 HOH TIP . C 3 HOH A 4 395 4 HOH TIP . C 3 HOH A 5 396 5 HOH TIP . C 3 HOH A 6 397 6 HOH TIP . C 3 HOH A 7 398 7 HOH TIP . C 3 HOH A 8 399 8 HOH TIP . C 3 HOH A 9 400 9 HOH TIP . C 3 HOH A 10 401 10 HOH TIP . C 3 HOH A 11 402 11 HOH TIP . C 3 HOH A 12 403 12 HOH TIP . C 3 HOH A 13 404 13 HOH TIP . C 3 HOH A 14 405 14 HOH TIP . C 3 HOH A 15 406 15 HOH TIP . C 3 HOH A 16 407 16 HOH TIP . C 3 HOH A 17 408 17 HOH TIP . C 3 HOH A 18 409 18 HOH TIP . C 3 HOH A 19 410 19 HOH TIP . C 3 HOH A 20 411 20 HOH TIP . C 3 HOH A 21 412 21 HOH TIP . C 3 HOH A 22 413 22 HOH TIP . C 3 HOH A 23 414 23 HOH TIP . C 3 HOH A 24 415 24 HOH TIP . C 3 HOH A 25 416 25 HOH TIP . C 3 HOH A 26 417 26 HOH TIP . C 3 HOH A 27 418 27 HOH TIP . C 3 HOH A 28 419 28 HOH TIP . C 3 HOH A 29 420 29 HOH TIP . C 3 HOH A 30 421 30 HOH TIP . C 3 HOH A 31 422 31 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 G2G . . . B 2 36.639 35.294 22.187 1 21.72 ? C3 G2G 391 A 1 HETATM 2 C C2 G2G . . . B 2 32.357 33.208 13.681 1 20.21 ? C2 G2G 391 A 1 HETATM 3 N N1 G2G . . . B 2 33.554 33.147 14.541 1 19.7 ? N1 G2G 391 A 1 HETATM 4 C C7 G2G . . . B 2 36.81 35.868 23.478 1 21.81 ? C7 G2G 391 A 1 HETATM 5 C C8 G2G . . . B 2 34.711 34.151 18.322 1 19.79 ? C8 G2G 391 A 1 HETATM 6 C C10 G2G . . . B 2 31.525 34.357 13.576 1 19.81 ? C10 G2G 391 A 1 HETATM 7 C C25 G2G . . . B 2 35.538 34.32 17.161 1 20.05 ? C25 G2G 391 A 1 HETATM 8 C C26 G2G . . . B 2 37.582 35.296 16.101 1 20.64 ? C26 G2G 391 A 1 HETATM 9 C C27 G2G . . . B 2 38.773 36.081 16.191 1 21.49 ? C27 G2G 391 A 1 HETATM 10 C C9 G2G . . . B 2 35.706 39.362 26.49 1 30.41 ? C9 G2G 391 A 1 HETATM 11 C C12 G2G . . . B 2 30.53 33.932 12.671 1 19.48 ? C12 G2G 391 A 1 HETATM 12 C C13 G2G . . . B 2 32.473 30.852 12.766 1 21.57 ? C13 G2G 391 A 1 HETATM 13 C C14 G2G . . . B 2 29.317 34.746 12.17 1 17.7 ? C14 G2G 391 A 1 HETATM 14 C C15 G2G . . . B 2 28.688 35.476 13.382 1 16.25 ? C15 G2G 391 A 1 HETATM 15 C C16 G2G . . . B 2 28.275 33.801 11.554 1 14.62 ? C16 G2G 391 A 1 HETATM 16 C C17 G2G . . . B 2 29.766 35.773 11.119 1 15.3 ? C17 G2G 391 A 1 HETATM 17 C C18 G2G . . . B 2 33.016 30.083 13.874 1 24.24 ? C18 G2G 391 A 1 HETATM 18 C C19 G2G . . . B 2 32.449 30.262 11.449 1 22.21 ? C19 G2G 391 A 1 HETATM 19 C C20 G2G . . . B 2 32.945 28.939 11.229 1 23.36 ? C20 G2G 391 A 1 HETATM 20 C C21 G2G . . . B 2 33.519 28.752 13.666 1 23.19 ? C21 G2G 391 A 1 HETATM 21 C C22 G2G . . . B 2 33.975 26.833 12.084 1 26.29 ? C22 G2G 391 A 1 HETATM 22 N N7 G2G . . . B 2 31.945 32.163 12.929 1 20.18 ? N7 G2G 391 A 1 HETATM 23 N N8 G2G . . . B 2 30.788 32.638 12.298 1 20.01 ? N8 G2G 391 A 1 HETATM 24 C C24 G2G . . . B 2 34.026 34.069 15.354 1 18.88 ? C24 G2G 391 A 1 HETATM 25 O O1 G2G . . . B 2 33.498 35.139 15.548 1 24.15 ? O1 G2G 391 A 1 HETATM 26 N N4 G2G . . . B 2 35.153 33.713 15.984 1 19.75 ? N4 G2G 391 A 1 HETATM 27 C C4 G2G . . . B 2 36.739 35.116 17.251 1 19.93 ? C4 G2G 391 A 1 HETATM 28 C C5 G2G . . . B 2 37.125 35.752 18.537 1 19.89 ? C5 G2G 391 A 1 HETATM 29 C C6 G2G . . . B 2 36.242 35.552 19.679 1 20.46 ? C6 G2G 391 A 1 HETATM 30 C C28 G2G . . . B 2 39.151 36.696 17.425 1 21.99 ? C28 G2G 391 A 1 HETATM 31 C C29 G2G . . . B 2 38.338 36.538 18.587 1 21.63 ? C29 G2G 391 A 1 HETATM 32 C C30 G2G . . . B 2 35.056 34.754 19.549 1 19.27 ? C30 G2G 391 A 1 HETATM 33 C C37 G2G . . . B 2 36.459 37.547 21.201 1 20.05 ? C37 G2G 391 A 1 HETATM 34 C C1 G2G . . . B 2 36.458 36.132 21.037 1 21.19 ? C1 G2G 391 A 1 HETATM 35 C C36 G2G . . . B 2 36.791 37.295 23.546 1 22.78 ? C36 G2G 391 A 1 HETATM 36 N N2 G2G . . . B 2 36.624 38.054 22.425 1 22.38 ? N2 G2G 391 A 1 HETATM 37 C C23 G2G . . . B 2 36.932 38.01 24.879 1 26.95 ? C23 G2G 391 A 1 HETATM 38 N N3 G2G . . . B 2 35.625 38.149 25.617 1 29.25 ? N3 G2G 391 A 1 HETATM 39 C C31 G2G . . . B 2 34.436 38.277 24.679 1 29.61 ? C31 G2G 391 A 1 HETATM 40 C C32 G2G . . . B 2 33.131 38.409 25.482 1 28.41 ? C32 G2G 391 A 1 HETATM 41 C C33 G2G . . . B 2 34.368 39.519 27.258 1 32.23 ? C33 G2G 391 A 1 HETATM 42 O O2 G2G . . . B 2 33.246 39.575 26.305 1 32.21 ? O2 G2G 391 A 1 HETATM 43 C C34 G2G . . . B 2 33.473 28.195 12.334 1 25.23 ? C34 G2G 391 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #