data_2PVG
#
_model_server_result.job_id            AuF8kbDmjqc-wvggUbHpjA 
_model_server_result.datetime_utc      '2025-07-20 04:40:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pvg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    2PVG 
#
_exptl.entry_id    2PVG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PVG 
_cell.length_a            63.462 
_cell.length_b            89.702 
_cell.length_c            99.303 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 57 1_555 A SG CYS 80 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc1 A SG CYS 48 A CYS 55 1_555 D FE4 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 A SG CYS 67 A CYS 74 1_555 D FE2 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc3 A SG CYS 69 A CYS 76 1_555 D FE3 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc4 A SG CYS 78 A CYS 85 1_555 D FE1 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc5 C SG CYS 39 C CYS 39 1_555 E FE1 FES . C FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc6 C SG CYS 44 C CYS 44 1_555 E FE1 FES . C FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc7 C SG CYS 47 C CYS 47 1_555 E FE2 FES . C FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc8 C SG CYS 77 C CYS 77 1_555 E FE2 FES . C FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 294 n n 
FE1 S3 SF4 sing 295 n n 
FE1 S4 SF4 sing 296 n n 
FE2 S1 SF4 sing 297 n n 
FE2 S3 SF4 sing 298 n n 
FE2 S4 SF4 sing 299 n n 
FE3 S1 SF4 sing 300 n n 
FE3 S2 SF4 sing 301 n n 
FE3 S4 SF4 sing 302 n n 
FE4 S1 SF4 sing 303 n n 
FE4 S2 SF4 sing 304 n n 
FE4 S3 SF4 sing 305 n n 
#
_atom_sites.entry_id                     2PVG 
_atom_sites.fract_transf_matrix[1][1]    0.015757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01007 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 SF4 A 1 400 400 SF4 SF4 . 
E 5 FES C 1 300 300 FES FES . 
F 6 HOH A 1 401 2 HOH HOH . 
F 6 HOH A 2 402 3 HOH HOH . 
F 6 HOH A 3 403 4 HOH HOH . 
F 6 HOH A 4 404 5 HOH HOH . 
F 6 HOH A 5 405 6 HOH HOH . 
F 6 HOH A 6 406 7 HOH HOH . 
F 6 HOH A 7 407 8 HOH HOH . 
F 6 HOH A 8 408 9 HOH HOH . 
F 6 HOH A 9 409 14 HOH HOH . 
F 6 HOH A 10 410 15 HOH HOH . 
F 6 HOH A 11 411 16 HOH HOH . 
F 6 HOH A 12 412 17 HOH HOH . 
F 6 HOH A 13 413 18 HOH HOH . 
F 6 HOH A 14 414 19 HOH HOH . 
F 6 HOH A 15 415 27 HOH HOH . 
F 6 HOH A 16 416 28 HOH HOH . 
F 6 HOH A 17 417 29 HOH HOH . 
F 6 HOH A 18 418 30 HOH HOH . 
F 6 HOH A 19 419 31 HOH HOH . 
F 6 HOH A 20 420 32 HOH HOH . 
F 6 HOH A 21 421 34 HOH HOH . 
F 6 HOH A 22 422 35 HOH HOH . 
F 6 HOH A 23 423 36 HOH HOH . 
F 6 HOH A 24 424 37 HOH HOH . 
F 6 HOH A 25 425 38 HOH HOH . 
F 6 HOH A 26 426 39 HOH HOH . 
F 6 HOH A 27 427 40 HOH HOH . 
F 6 HOH A 28 428 43 HOH HOH . 
F 6 HOH A 29 429 52 HOH HOH . 
F 6 HOH A 30 430 56 HOH HOH . 
F 6 HOH A 31 431 57 HOH HOH . 
F 6 HOH A 32 432 58 HOH HOH . 
F 6 HOH A 33 433 65 HOH HOH . 
F 6 HOH A 34 434 66 HOH HOH . 
F 6 HOH A 35 435 74 HOH HOH . 
F 6 HOH A 36 436 75 HOH HOH . 
F 6 HOH A 37 437 76 HOH HOH . 
F 6 HOH A 38 438 77 HOH HOH . 
F 6 HOH A 39 439 78 HOH HOH . 
F 6 HOH A 40 440 79 HOH HOH . 
F 6 HOH A 41 441 80 HOH HOH . 
F 6 HOH A 42 442 82 HOH HOH . 
F 6 HOH A 43 443 83 HOH HOH . 
F 6 HOH A 44 444 85 HOH HOH . 
F 6 HOH A 45 445 86 HOH HOH . 
F 6 HOH A 46 446 87 HOH HOH . 
F 6 HOH A 47 447 88 HOH HOH . 
F 6 HOH A 48 448 90 HOH HOH . 
F 6 HOH A 49 449 96 HOH HOH . 
F 6 HOH A 50 450 98 HOH HOH . 
F 6 HOH A 51 451 99 HOH HOH . 
G 6 HOH B 1 74 10 HOH HOH . 
G 6 HOH B 2 75 20 HOH HOH . 
G 6 HOH B 3 76 21 HOH HOH . 
G 6 HOH B 4 77 22 HOH HOH . 
G 6 HOH B 5 78 23 HOH HOH . 
G 6 HOH B 6 79 41 HOH HOH . 
G 6 HOH B 7 80 42 HOH HOH . 
G 6 HOH B 8 81 44 HOH HOH . 
G 6 HOH B 9 82 45 HOH HOH . 
G 6 HOH B 10 83 46 HOH HOH . 
G 6 HOH B 11 84 47 HOH HOH . 
G 6 HOH B 12 85 48 HOH HOH . 
G 6 HOH B 13 86 49 HOH HOH . 
G 6 HOH B 14 87 51 HOH HOH . 
G 6 HOH B 15 88 53 HOH HOH . 
G 6 HOH B 16 89 54 HOH HOH . 
G 6 HOH B 17 90 55 HOH HOH . 
G 6 HOH B 18 91 59 HOH HOH . 
G 6 HOH B 19 92 60 HOH HOH . 
G 6 HOH B 20 93 61 HOH HOH . 
G 6 HOH B 21 94 62 HOH HOH . 
G 6 HOH B 22 95 81 HOH HOH . 
G 6 HOH B 23 96 89 HOH HOH . 
G 6 HOH B 24 97 91 HOH HOH . 
G 6 HOH B 25 98 100 HOH HOH . 
G 6 HOH B 26 99 101 HOH HOH . 
G 6 HOH B 27 100 102 HOH HOH . 
H 6 HOH C 1 301 1 HOH HOH . 
H 6 HOH C 2 302 11 HOH HOH . 
H 6 HOH C 3 303 12 HOH HOH . 
H 6 HOH C 4 304 13 HOH HOH . 
H 6 HOH C 5 305 24 HOH HOH . 
H 6 HOH C 6 306 25 HOH HOH . 
H 6 HOH C 7 307 26 HOH HOH . 
H 6 HOH C 8 308 33 HOH HOH . 
H 6 HOH C 9 309 50 HOH HOH . 
H 6 HOH C 10 310 63 HOH HOH . 
H 6 HOH C 11 311 64 HOH HOH . 
H 6 HOH C 12 312 67 HOH HOH . 
H 6 HOH C 13 313 68 HOH HOH . 
H 6 HOH C 14 314 69 HOH HOH . 
H 6 HOH C 15 315 70 HOH HOH . 
H 6 HOH C 16 316 71 HOH HOH . 
H 6 HOH C 17 317 72 HOH HOH . 
H 6 HOH C 18 318 73 HOH HOH . 
H 6 HOH C 19 319 84 HOH HOH . 
H 6 HOH C 20 320 92 HOH HOH . 
H 6 HOH C 21 321 93 HOH HOH . 
H 6 HOH C 22 322 94 HOH HOH . 
H 6 HOH C 23 323 95 HOH HOH . 
H 6 HOH C 24 324 97 HOH HOH . 
H 6 HOH C 25 325 103 HOH HOH . 
H 6 HOH C 26 326 104 HOH HOH . 
H 6 HOH C 27 327 105 HOH HOH . 
H 6 HOH C 28 328 106 HOH HOH . 
H 6 HOH C 29 329 107 HOH HOH . 
H 6 HOH C 30 330 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . D 4 15.044 7.888 13.824 1 38.62 ? FE1 SF4 400 A 1 
HETATM 2 FE FE2 SF4 . . . D 4 16.132 10.36 14.399 1 35.39 ? FE2 SF4 400 A 1 
HETATM 3 FE FE3 SF4 . . . D 4 16.53 9.16 11.951 1 37.4 ? FE3 SF4 400 A 1 
HETATM 4 FE FE4 SF4 . . . D 4 17.726 8.096 14.19 1 38.06 ? FE4 SF4 400 A 1 
HETATM 5 S S1 SF4 . . . D 4 18.115 10.212 13.243 1 38.13 ? S1 SF4 400 A 1 
HETATM 6 S S2 SF4 . . . D 4 16.669 6.93 12.513 1 36.9 ? S2 SF4 400 A 1 
HETATM 7 S S3 SF4 . . . D 4 16.124 8.497 15.778 1 36.39 ? S3 SF4 400 A 1 
HETATM 8 S S4 SF4 . . . D 4 14.497 9.876 12.803 1 38.51 ? S4 SF4 400 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#