data_2PVO # _model_server_result.job_id -ljKilgTW2dkahMYNrkvNw _model_server_result.datetime_utc '2024-12-22 01:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":300}' # _entry.id 2PVO # _exptl.entry_id 2PVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PVO _cell.length_a 130.426 _cell.length_b 130.426 _cell.length_c 63.837 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 57 1_555 C SG CYS 36 C CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 A SG CYS 48 A CYS 55 1_555 G FE4 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc2 A SG CYS 67 A CYS 74 1_555 G FE3 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 A SG CYS 69 A CYS 76 1_555 G FE1 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 A SG CYS 78 A CYS 85 1_555 G FE2 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc5 A SG CYS 80 A CYS 87 1_555 G FE4 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc6 D SG CYS 39 D CYS 39 1_555 H FE1 FES . D FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 D SG CYS 44 D CYS 44 1_555 H FE1 FES . D FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc8 D N CYS 44 D CYS 44 1_555 H FE1 FES . D FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc9 D SG CYS 47 D CYS 47 1_555 H FE2 FES . D FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc10 D SG CYS 77 D CYS 77 1_555 H FE2 FES . D FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 292 n n FE1 S3 SF4 sing 293 n n FE1 S4 SF4 sing 294 n n FE2 S1 SF4 sing 295 n n FE2 S3 SF4 sing 296 n n FE2 S4 SF4 sing 297 n n FE3 S1 SF4 sing 298 n n FE3 S2 SF4 sing 299 n n FE3 S4 SF4 sing 300 n n FE4 S1 SF4 sing 301 n n FE4 S2 SF4 sing 302 n n FE4 S3 SF4 sing 303 n n # _atom_sites.entry_id 2PVO _atom_sites.fract_transf_matrix[1][1] 0.007667 _atom_sites.fract_transf_matrix[1][2] 0.004427 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SO4 A 1 201 201 SO4 SO4 . F 5 SO4 A 1 202 202 SO4 SO4 . G 6 SF4 A 1 300 300 SF4 FS4 . H 7 FES D 1 400 400 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . G 6 42.236 35.528 46.544 1 17.82 ? FE1 SF4 300 A 1 HETATM 2 FE FE2 SF4 . . . G 6 43.603 36.156 48.755 1 19.24 ? FE2 SF4 300 A 1 HETATM 3 FE FE3 SF4 . . . G 6 40.994 36.985 48.53 1 21.02 ? FE3 SF4 300 A 1 HETATM 4 FE FE4 SF4 . . . G 6 43.022 38.111 46.998 1 19.78 ? FE4 SF4 300 A 1 HETATM 5 S S1 SF4 . . . G 6 42.743 38.275 49.298 1 20.15 ? S1 SF4 300 A 1 HETATM 6 S S2 SF4 . . . G 6 40.974 37.393 46.265 1 19.67 ? S2 SF4 300 A 1 HETATM 7 S S3 SF4 . . . G 6 44.319 36.428 46.629 1 20.22 ? S3 SF4 300 A 1 HETATM 8 S S4 SF4 . . . G 6 41.688 34.94 48.731 1 19.49 ? S4 SF4 300 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 587 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #