data_2PVQ # _model_server_result.job_id j5UnvyNWry7cVZgql3AkVw _model_server_result.datetime_utc '2025-03-04 22:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":5204}' # _entry.id 2PVQ # _exptl.entry_id 2PVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PVQ _cell.length_a 58.373 _cell.length_b 58.373 _cell.length_c 214.023 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 58.373 0 107.0115 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 2PVQ _atom_sites.fract_transf_matrix[1][1] 0.017131 _atom_sites.fract_transf_matrix[1][2] 0.009891 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 5001 5001 SO4 SO4 . C 2 SO4 A 1 5002 5002 SO4 SO4 . D 3 GSH A 1 5204 5204 GSH GTT . E 4 HOH A 1 5205 1 HOH HOH . E 4 HOH A 2 5206 2 HOH HOH . E 4 HOH A 3 5207 3 HOH HOH . E 4 HOH A 4 5208 4 HOH HOH . E 4 HOH A 5 5209 5 HOH HOH . E 4 HOH A 6 5210 6 HOH HOH . E 4 HOH A 7 5211 7 HOH HOH . E 4 HOH A 8 5212 8 HOH HOH . E 4 HOH A 9 5213 9 HOH HOH . E 4 HOH A 10 5214 10 HOH HOH . E 4 HOH A 11 5215 11 HOH HOH . E 4 HOH A 12 5216 12 HOH HOH . E 4 HOH A 13 5217 13 HOH HOH . E 4 HOH A 14 5218 14 HOH HOH . E 4 HOH A 15 5219 15 HOH HOH . E 4 HOH A 16 5220 16 HOH HOH . E 4 HOH A 17 5221 17 HOH HOH . E 4 HOH A 18 5222 18 HOH HOH . E 4 HOH A 19 5223 19 HOH HOH . E 4 HOH A 20 5224 20 HOH HOH . E 4 HOH A 21 5225 21 HOH HOH . E 4 HOH A 22 5226 22 HOH HOH . E 4 HOH A 23 5227 23 HOH HOH . E 4 HOH A 24 5228 24 HOH HOH . E 4 HOH A 25 5229 25 HOH HOH . E 4 HOH A 26 5230 27 HOH HOH . E 4 HOH A 27 5231 28 HOH HOH . E 4 HOH A 28 5232 29 HOH HOH . E 4 HOH A 29 5233 30 HOH HOH . E 4 HOH A 30 5234 31 HOH HOH . E 4 HOH A 31 5235 32 HOH HOH . E 4 HOH A 32 5236 33 HOH HOH . E 4 HOH A 33 5237 34 HOH HOH . E 4 HOH A 34 5238 35 HOH HOH . E 4 HOH A 35 5239 36 HOH HOH . E 4 HOH A 36 5240 37 HOH HOH . E 4 HOH A 37 5241 38 HOH HOH . E 4 HOH A 38 5242 39 HOH HOH . E 4 HOH A 39 5243 40 HOH HOH . E 4 HOH A 40 5244 41 HOH HOH . E 4 HOH A 41 5245 43 HOH HOH . E 4 HOH A 42 5246 44 HOH HOH . E 4 HOH A 43 5247 45 HOH HOH . E 4 HOH A 44 5248 46 HOH HOH . E 4 HOH A 45 5249 47 HOH HOH . E 4 HOH A 46 5250 48 HOH HOH . E 4 HOH A 47 5251 49 HOH HOH . E 4 HOH A 48 5252 50 HOH HOH . E 4 HOH A 49 5253 51 HOH HOH . E 4 HOH A 50 5254 52 HOH HOH . E 4 HOH A 51 5255 53 HOH HOH . E 4 HOH A 52 5256 54 HOH HOH . E 4 HOH A 53 5257 55 HOH HOH . E 4 HOH A 54 5258 56 HOH HOH . E 4 HOH A 55 5259 57 HOH HOH . E 4 HOH A 56 5260 58 HOH HOH . E 4 HOH A 57 5261 59 HOH HOH . E 4 HOH A 58 5262 60 HOH HOH . E 4 HOH A 59 5263 61 HOH HOH . E 4 HOH A 60 5264 62 HOH HOH . E 4 HOH A 61 5265 63 HOH HOH . E 4 HOH A 62 5266 64 HOH HOH . E 4 HOH A 63 5267 65 HOH HOH . E 4 HOH A 64 5268 66 HOH HOH . E 4 HOH A 65 5269 67 HOH HOH . E 4 HOH A 66 5270 68 HOH HOH . E 4 HOH A 67 5271 69 HOH HOH . E 4 HOH A 68 5272 70 HOH HOH . E 4 HOH A 69 5273 71 HOH HOH . E 4 HOH A 70 5274 72 HOH HOH . E 4 HOH A 71 5275 73 HOH HOH . E 4 HOH A 72 5276 74 HOH HOH . E 4 HOH A 73 5277 75 HOH HOH . E 4 HOH A 74 5278 76 HOH HOH . E 4 HOH A 75 5279 77 HOH HOH . E 4 HOH A 76 5280 78 HOH HOH . E 4 HOH A 77 5281 79 HOH HOH . E 4 HOH A 78 5282 81 HOH HOH . E 4 HOH A 79 5283 82 HOH HOH . E 4 HOH A 80 5284 83 HOH HOH . E 4 HOH A 81 5285 84 HOH HOH . E 4 HOH A 82 5286 85 HOH HOH . E 4 HOH A 83 5287 86 HOH HOH . E 4 HOH A 84 5288 87 HOH HOH . E 4 HOH A 85 5289 88 HOH HOH . E 4 HOH A 86 5290 89 HOH HOH . E 4 HOH A 87 5291 90 HOH HOH . E 4 HOH A 88 5292 91 HOH HOH . E 4 HOH A 89 5293 93 HOH HOH . E 4 HOH A 90 5294 94 HOH HOH . E 4 HOH A 91 5295 95 HOH HOH . E 4 HOH A 92 5296 96 HOH HOH . E 4 HOH A 93 5297 97 HOH HOH . E 4 HOH A 94 5298 98 HOH HOH . E 4 HOH A 95 5299 99 HOH HOH . E 4 HOH A 96 5300 100 HOH HOH . E 4 HOH A 97 5301 101 HOH HOH . E 4 HOH A 98 5302 102 HOH HOH . E 4 HOH A 99 5303 103 HOH HOH . E 4 HOH A 100 5304 105 HOH HOH . E 4 HOH A 101 5305 106 HOH HOH . E 4 HOH A 102 5306 107 HOH HOH . E 4 HOH A 103 5307 109 HOH HOH . E 4 HOH A 104 5308 110 HOH HOH . E 4 HOH A 105 5309 111 HOH HOH . E 4 HOH A 106 5310 112 HOH HOH . E 4 HOH A 107 5311 113 HOH HOH . E 4 HOH A 108 5312 114 HOH HOH . E 4 HOH A 109 5313 115 HOH HOH . E 4 HOH A 110 5314 116 HOH HOH . E 4 HOH A 111 5315 117 HOH HOH . E 4 HOH A 112 5316 118 HOH HOH . E 4 HOH A 113 5317 119 HOH HOH . E 4 HOH A 114 5318 120 HOH HOH . E 4 HOH A 115 5319 121 HOH HOH . E 4 HOH A 116 5320 122 HOH HOH . E 4 HOH A 117 5321 123 HOH HOH . E 4 HOH A 118 5322 124 HOH HOH . E 4 HOH A 119 5323 125 HOH HOH . E 4 HOH A 120 5324 126 HOH HOH . E 4 HOH A 121 5325 127 HOH HOH . E 4 HOH A 122 5326 129 HOH HOH . E 4 HOH A 123 5327 130 HOH HOH . E 4 HOH A 124 5328 131 HOH HOH . E 4 HOH A 125 5329 132 HOH HOH . E 4 HOH A 126 5330 133 HOH HOH . E 4 HOH A 127 5331 134 HOH HOH . E 4 HOH A 128 5332 136 HOH HOH . E 4 HOH A 129 5333 137 HOH HOH . E 4 HOH A 130 5334 138 HOH HOH . E 4 HOH A 131 5335 139 HOH HOH . E 4 HOH A 132 5336 140 HOH HOH . E 4 HOH A 133 5337 143 HOH HOH . E 4 HOH A 134 5338 144 HOH HOH . E 4 HOH A 135 5339 145 HOH HOH . E 4 HOH A 136 5340 147 HOH HOH . E 4 HOH A 137 5341 148 HOH HOH . E 4 HOH A 138 5342 149 HOH HOH . E 4 HOH A 139 5343 151 HOH HOH . E 4 HOH A 140 5344 152 HOH HOH . E 4 HOH A 141 5345 153 HOH HOH . E 4 HOH A 142 5346 155 HOH HOH . E 4 HOH A 143 5347 156 HOH HOH . E 4 HOH A 144 5348 157 HOH HOH . E 4 HOH A 145 5349 158 HOH HOH . E 4 HOH A 146 5350 159 HOH HOH . E 4 HOH A 147 5351 161 HOH HOH . E 4 HOH A 148 5352 162 HOH HOH . E 4 HOH A 149 5353 163 HOH HOH . E 4 HOH A 150 5354 164 HOH HOH . E 4 HOH A 151 5355 165 HOH HOH . E 4 HOH A 152 5356 166 HOH HOH . E 4 HOH A 153 5357 167 HOH HOH . E 4 HOH A 154 5358 168 HOH HOH . E 4 HOH A 155 5359 169 HOH HOH . E 4 HOH A 156 5360 170 HOH HOH . E 4 HOH A 157 5361 171 HOH HOH . E 4 HOH A 158 5362 172 HOH HOH . E 4 HOH A 159 5363 173 HOH HOH . E 4 HOH A 160 5364 175 HOH HOH . E 4 HOH A 161 5365 177 HOH HOH . E 4 HOH A 162 5366 178 HOH HOH . E 4 HOH A 163 5367 179 HOH HOH . E 4 HOH A 164 5368 180 HOH HOH . E 4 HOH A 165 5369 182 HOH HOH . E 4 HOH A 166 5370 183 HOH HOH . E 4 HOH A 167 5371 184 HOH HOH . E 4 HOH A 168 5372 185 HOH HOH . E 4 HOH A 169 5373 186 HOH HOH . E 4 HOH A 170 5374 188 HOH HOH . E 4 HOH A 171 5375 189 HOH HOH . E 4 HOH A 172 5376 190 HOH HOH . E 4 HOH A 173 5377 191 HOH HOH . E 4 HOH A 174 5378 192 HOH HOH . E 4 HOH A 175 5379 193 HOH HOH . E 4 HOH A 176 5380 194 HOH HOH . E 4 HOH A 177 5381 195 HOH HOH . E 4 HOH A 178 5382 196 HOH HOH . E 4 HOH A 179 5383 197 HOH HOH . E 4 HOH A 180 5384 198 HOH HOH . E 4 HOH A 181 5385 199 HOH HOH . E 4 HOH A 182 5386 200 HOH HOH . E 4 HOH A 183 5387 201 HOH HOH . E 4 HOH A 184 5388 202 HOH HOH . E 4 HOH A 185 5389 203 HOH HOH . E 4 HOH A 186 5390 204 HOH HOH . E 4 HOH A 187 5391 205 HOH HOH . E 4 HOH A 188 5392 206 HOH HOH . E 4 HOH A 189 5393 207 HOH HOH . E 4 HOH A 190 5394 208 HOH HOH . E 4 HOH A 191 5395 209 HOH HOH . E 4 HOH A 192 5396 210 HOH HOH . E 4 HOH A 193 5397 211 HOH HOH . E 4 HOH A 194 5398 212 HOH HOH . E 4 HOH A 195 5399 213 HOH HOH . E 4 HOH A 196 5400 214 HOH HOH . E 4 HOH A 197 5401 215 HOH HOH . E 4 HOH A 198 5402 216 HOH HOH . E 4 HOH A 199 5403 217 HOH HOH . E 4 HOH A 200 5404 218 HOH HOH . E 4 HOH A 201 5405 219 HOH HOH . E 4 HOH A 202 5406 220 HOH HOH . E 4 HOH A 203 5407 221 HOH HOH . E 4 HOH A 204 5408 222 HOH HOH . E 4 HOH A 205 5409 223 HOH HOH . E 4 HOH A 206 5410 224 HOH HOH . E 4 HOH A 207 5411 225 HOH HOH . E 4 HOH A 208 5412 226 HOH HOH . E 4 HOH A 209 5413 227 HOH HOH . E 4 HOH A 210 5414 229 HOH HOH . E 4 HOH A 211 5415 231 HOH HOH . E 4 HOH A 212 5416 234 HOH HOH . E 4 HOH A 213 5417 235 HOH HOH . E 4 HOH A 214 5418 236 HOH HOH . E 4 HOH A 215 5419 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . D 3 45.751 1.654 49.444 0.7 37.81 ? N1 GSH 5204 A 1 HETATM 2 C CA1 GSH . . . D 3 45.619 3.019 49.893 0.7 37.82 ? CA1 GSH 5204 A 1 HETATM 3 C C1 GSH . . . D 3 46.773 3.816 49.411 0.7 38.83 ? C1 GSH 5204 A 1 HETATM 4 O O11 GSH . . . D 3 47.444 3.44 48.234 0.7 39.53 ? O11 GSH 5204 A 1 HETATM 5 O O12 GSH . . . D 3 47.139 4.87 50.092 0.7 39.82 ? O12 GSH 5204 A 1 HETATM 6 C CB1 GSH . . . D 3 44.427 3.67 49.244 0.7 36.34 ? CB1 GSH 5204 A 1 HETATM 7 C CG1 GSH . . . D 3 43.97 4.812 50.131 0.7 36.96 ? CG1 GSH 5204 A 1 HETATM 8 C CD1 GSH . . . D 3 42.94 4.214 51.03 0.7 36.86 ? CD1 GSH 5204 A 1 HETATM 9 O OE1 GSH . . . D 3 42.415 2.966 50.71 0.7 39.23 ? OE1 GSH 5204 A 1 HETATM 10 N N2 GSH . . . D 3 42.572 4.892 52.095 0.7 37.25 ? N2 GSH 5204 A 1 HETATM 11 C CA2 GSH . . . D 3 41.196 4.891 52.552 0.7 37.56 ? CA2 GSH 5204 A 1 HETATM 12 C C2 GSH . . . D 3 40.377 3.848 51.881 0.7 37.46 ? C2 GSH 5204 A 1 HETATM 13 O O2 GSH . . . D 3 40.29 3.813 50.488 0.7 38.38 ? O2 GSH 5204 A 1 HETATM 14 C CB2 GSH . . . D 3 40.558 6.231 52.257 0.7 37.96 ? CB2 GSH 5204 A 1 HETATM 15 S SG2 GSH . . . D 3 41.494 7.608 52.915 0.7 36.47 ? SG2 GSH 5204 A 1 HETATM 16 N N3 GSH . . . D 3 39.752 2.993 52.663 0.7 37.31 ? N3 GSH 5204 A 1 HETATM 17 C CA3 GSH . . . D 3 39.713 3.154 54.09 0.7 37.18 ? CA3 GSH 5204 A 1 HETATM 18 C C3 GSH . . . D 3 39.46 4.59 54.453 0.7 37.81 ? C3 GSH 5204 A 1 HETATM 19 O O31 GSH . . . D 3 38.83 5.449 53.552 0.7 36.85 ? O31 GSH 5204 A 1 HETATM 20 O O32 GSH . . . D 3 39.815 5.06 55.619 0.7 40.41 ? O32 GSH 5204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #