data_2PVS # _model_server_result.job_id A4qPEbx8Qz9fywWq7BqXLQ _model_server_result.datetime_utc '2025-09-09 23:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":451}' # _entry.id 2PVS # _exptl.entry_id 2PVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PVS _cell.length_a 216.181 _cell.length_b 216.181 _cell.length_c 123.672 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_457 y-1/2,x+1/2,-z+5/2 0 1 0 1 0 0 0 0 -1 -108.0905 108.0905 309.18 3 'crystal symmetry operation' 10_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 216.181 0 4 'crystal symmetry operation' 16_557 -y+1/2,-x+1/2,-z+5/2 0 -1 0 -1 0 0 0 0 -1 108.0905 108.0905 309.18 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 2 1_555 A SG CYS 10 A CYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 A SG CYS 92 A CYS 90 1_555 A SG CYS 103 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf3 A SG CYS 239 A CYS 237 1_555 A SG CYS 263 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 A SG CYS 287 A CYS 285 1_555 A SG CYS 298 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 A SG CYS 301 A CYS 299 1_555 A SG CYS 306 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 436 A CYS 434 1_555 A SG CYS 452 A CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf7 B SG CYS 4 B CYS 2 1_555 B SG CYS 10 B CYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf8 B SG CYS 92 B CYS 90 1_555 B SG CYS 103 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf9 B SG CYS 239 B CYS 237 1_555 B SG CYS 263 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf10 B SG CYS 287 B CYS 285 1_555 B SG CYS 298 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf11 B SG CYS 301 B CYS 299 1_555 B SG CYS 306 B CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf12 B SG CYS 436 B CYS 434 1_555 B SG CYS 452 B CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc1 A O GLU 189 A GLU 187 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 A O ARG 192 A ARG 190 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A OD2 ASP 194 A ASP 192 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A OD1 ASP 197 A ASP 195 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 A OD2 ASP 197 A ASP 195 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc6 B O GLU 189 B GLU 187 1_555 L CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 B O ARG 192 B ARG 190 1_555 L CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 B OD2 ASP 194 B ASP 192 1_555 L CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc9 B OD1 ASP 197 B ASP 195 1_555 L CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc10 B OD2 ASP 197 B ASP 195 1_555 L CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 L CA CA . B CA 501 1_555 N O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 2PVS _atom_sites.fract_transf_matrix[1][1] 0.004626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 451 201 SO4 SO4 . D 2 SO4 A 1 452 202 SO4 SO4 . E 2 SO4 A 1 453 203 SO4 SO4 . F 2 SO4 A 1 454 206 SO4 SO4 . G 2 SO4 A 1 455 207 SO4 SO4 . H 3 CA A 1 502 502 CA CA . I 2 SO4 B 1 451 204 SO4 SO4 . J 2 SO4 B 1 452 205 SO4 SO4 . K 2 SO4 B 1 453 208 SO4 SO4 . L 3 CA B 1 501 501 CA CA . M 4 HOH A 1 503 7 HOH HOH . M 4 HOH A 2 504 10 HOH HOH . M 4 HOH A 3 505 12 HOH HOH . M 4 HOH A 4 506 20 HOH HOH . M 4 HOH A 5 507 21 HOH HOH . M 4 HOH A 6 508 24 HOH HOH . M 4 HOH A 7 509 25 HOH HOH . M 4 HOH A 8 510 26 HOH HOH . M 4 HOH A 9 511 29 HOH HOH . M 4 HOH A 10 512 30 HOH HOH . M 4 HOH A 11 513 33 HOH HOH . M 4 HOH A 12 514 34 HOH HOH . M 4 HOH A 13 515 37 HOH HOH . M 4 HOH A 14 516 38 HOH HOH . M 4 HOH A 15 517 49 HOH HOH . M 4 HOH A 16 518 50 HOH HOH . M 4 HOH A 17 519 52 HOH HOH . M 4 HOH A 18 520 54 HOH HOH . M 4 HOH A 19 521 56 HOH HOH . M 4 HOH A 20 522 61 HOH HOH . M 4 HOH A 21 523 62 HOH HOH . M 4 HOH A 22 524 63 HOH HOH . M 4 HOH A 23 525 64 HOH HOH . M 4 HOH A 24 526 67 HOH HOH . M 4 HOH A 25 527 68 HOH HOH . M 4 HOH A 26 528 69 HOH HOH . M 4 HOH A 27 529 70 HOH HOH . M 4 HOH A 28 530 132 HOH HOH . M 4 HOH A 29 531 135 HOH HOH . M 4 HOH A 30 532 136 HOH HOH . N 4 HOH B 1 502 8 HOH HOH . N 4 HOH B 2 503 9 HOH HOH . N 4 HOH B 3 504 11 HOH HOH . N 4 HOH B 4 505 13 HOH HOH . N 4 HOH B 5 506 14 HOH HOH . N 4 HOH B 6 507 15 HOH HOH . N 4 HOH B 7 508 16 HOH HOH . N 4 HOH B 8 509 17 HOH HOH . N 4 HOH B 9 510 18 HOH HOH . N 4 HOH B 10 511 19 HOH HOH . N 4 HOH B 11 512 22 HOH HOH . N 4 HOH B 12 513 23 HOH HOH . N 4 HOH B 13 514 27 HOH HOH . N 4 HOH B 14 515 28 HOH HOH . N 4 HOH B 15 516 31 HOH HOH . N 4 HOH B 16 517 32 HOH HOH . N 4 HOH B 17 518 35 HOH HOH . N 4 HOH B 18 519 36 HOH HOH . N 4 HOH B 19 520 39 HOH HOH . N 4 HOH B 20 521 40 HOH HOH . N 4 HOH B 21 522 41 HOH HOH . N 4 HOH B 22 523 42 HOH HOH . N 4 HOH B 23 524 43 HOH HOH . N 4 HOH B 24 525 44 HOH HOH . N 4 HOH B 25 526 45 HOH HOH . N 4 HOH B 26 527 46 HOH HOH . N 4 HOH B 27 528 47 HOH HOH . N 4 HOH B 28 529 48 HOH HOH . N 4 HOH B 29 530 51 HOH HOH . N 4 HOH B 30 531 53 HOH HOH . N 4 HOH B 31 532 55 HOH HOH . N 4 HOH B 32 533 57 HOH HOH . N 4 HOH B 33 534 58 HOH HOH . N 4 HOH B 34 535 59 HOH HOH . N 4 HOH B 35 536 60 HOH HOH . N 4 HOH B 36 537 65 HOH HOH . N 4 HOH B 37 538 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 2 23.956 122.99 128.884 1 69.24 ? S SO4 451 B 1 HETATM 2 O O1 SO4 . . . I 2 24.892 122.727 129.965 1 70.89 ? O1 SO4 451 B 1 HETATM 3 O O2 SO4 . . . I 2 23.631 121.754 128.183 1 69.16 ? O2 SO4 451 B 1 HETATM 4 O O3 SO4 . . . I 2 22.744 123.603 129.411 1 70.31 ? O3 SO4 451 B 1 HETATM 5 O O4 SO4 . . . I 2 24.606 123.922 127.98 1 71.35 ? O4 SO4 451 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #