data_2PWL # _model_server_result.job_id lcfYLPNnYFSuZy_IYKAUVw _model_server_result.datetime_utc '2024-12-04 17:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 2PWL # _exptl.entry_id 2PWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PWL _cell.length_a 105.521 _cell.length_b 117.509 _cell.length_c 63.174 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 2PWL _atom_sites.fract_transf_matrix[1][1] 0.009477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 303 303 SO4 SO4 . D 2 SO4 A 1 304 304 SO4 SO4 . E 3 ACP A 1 300 300 ACP PCP . F 2 SO4 B 1 303 1303 SO4 SO4 . G 2 SO4 B 1 304 1304 SO4 SO4 . H 3 ACP B 1 300 1300 ACP PCP . I 4 HOH A 1 3 3 HOH HOH . I 4 HOH A 2 6 6 HOH HOH . I 4 HOH A 3 7 7 HOH HOH . I 4 HOH A 4 9 9 HOH HOH . I 4 HOH A 5 14 14 HOH HOH . I 4 HOH A 6 19 19 HOH HOH . I 4 HOH A 7 21 21 HOH HOH . I 4 HOH A 8 22 22 HOH HOH . I 4 HOH A 9 23 23 HOH HOH . I 4 HOH A 10 27 27 HOH HOH . I 4 HOH A 11 28 28 HOH HOH . I 4 HOH A 12 30 30 HOH HOH . I 4 HOH A 13 31 31 HOH HOH . I 4 HOH A 14 32 32 HOH HOH . I 4 HOH A 15 36 36 HOH HOH . I 4 HOH A 16 38 38 HOH HOH . I 4 HOH A 17 40 40 HOH HOH . I 4 HOH A 18 41 41 HOH HOH . I 4 HOH A 19 43 43 HOH HOH . I 4 HOH A 20 48 48 HOH HOH . I 4 HOH A 21 50 50 HOH HOH . I 4 HOH A 22 52 52 HOH HOH . I 4 HOH A 23 55 55 HOH HOH . I 4 HOH A 24 56 56 HOH HOH . I 4 HOH A 25 57 57 HOH HOH . I 4 HOH A 26 58 58 HOH HOH . I 4 HOH A 27 60 60 HOH HOH . I 4 HOH A 28 61 61 HOH HOH . I 4 HOH A 29 64 64 HOH HOH . I 4 HOH A 30 66 66 HOH HOH . I 4 HOH A 31 68 68 HOH HOH . I 4 HOH A 32 69 69 HOH HOH . I 4 HOH A 33 70 70 HOH HOH . I 4 HOH A 34 71 71 HOH HOH . I 4 HOH A 35 72 72 HOH HOH . I 4 HOH A 36 73 73 HOH HOH . I 4 HOH A 37 74 74 HOH HOH . I 4 HOH A 38 76 76 HOH HOH . I 4 HOH A 39 77 77 HOH HOH . I 4 HOH A 40 80 80 HOH HOH . I 4 HOH A 41 85 85 HOH HOH . I 4 HOH A 42 89 89 HOH HOH . I 4 HOH A 43 90 90 HOH HOH . I 4 HOH A 44 91 91 HOH HOH . I 4 HOH A 45 95 95 HOH HOH . I 4 HOH A 46 97 97 HOH HOH . I 4 HOH A 47 98 98 HOH HOH . I 4 HOH A 48 101 101 HOH HOH . I 4 HOH A 49 103 103 HOH HOH . I 4 HOH A 50 104 104 HOH HOH . I 4 HOH A 51 106 106 HOH HOH . I 4 HOH A 52 107 107 HOH HOH . I 4 HOH A 53 112 112 HOH HOH . I 4 HOH A 54 114 114 HOH HOH . I 4 HOH A 55 116 116 HOH HOH . I 4 HOH A 56 117 117 HOH HOH . I 4 HOH A 57 118 118 HOH HOH . I 4 HOH A 58 120 120 HOH HOH . I 4 HOH A 59 121 121 HOH HOH . I 4 HOH A 60 123 123 HOH HOH . I 4 HOH A 61 126 126 HOH HOH . I 4 HOH A 62 127 127 HOH HOH . I 4 HOH A 63 129 129 HOH HOH . I 4 HOH A 64 130 130 HOH HOH . I 4 HOH A 65 131 131 HOH HOH . I 4 HOH A 66 132 132 HOH HOH . I 4 HOH A 67 133 133 HOH HOH . J 4 HOH B 1 1 1 HOH HOH . J 4 HOH B 2 2 2 HOH HOH . J 4 HOH B 3 4 4 HOH HOH . J 4 HOH B 4 5 5 HOH HOH . J 4 HOH B 5 8 8 HOH HOH . J 4 HOH B 6 10 10 HOH HOH . J 4 HOH B 7 11 11 HOH HOH . J 4 HOH B 8 12 12 HOH HOH . J 4 HOH B 9 13 13 HOH HOH . J 4 HOH B 10 15 15 HOH HOH . J 4 HOH B 11 16 16 HOH HOH . J 4 HOH B 12 17 17 HOH HOH . J 4 HOH B 13 18 18 HOH HOH . J 4 HOH B 14 20 20 HOH HOH . J 4 HOH B 15 24 24 HOH HOH . J 4 HOH B 16 25 25 HOH HOH . J 4 HOH B 17 26 26 HOH HOH . J 4 HOH B 18 29 29 HOH HOH . J 4 HOH B 19 33 33 HOH HOH . J 4 HOH B 20 34 34 HOH HOH . J 4 HOH B 21 35 35 HOH HOH . J 4 HOH B 22 37 37 HOH HOH . J 4 HOH B 23 39 39 HOH HOH . J 4 HOH B 24 42 42 HOH HOH . J 4 HOH B 25 44 44 HOH HOH . J 4 HOH B 26 45 45 HOH HOH . J 4 HOH B 27 46 46 HOH HOH . J 4 HOH B 28 47 47 HOH HOH . J 4 HOH B 29 49 49 HOH HOH . J 4 HOH B 30 51 51 HOH HOH . J 4 HOH B 31 53 53 HOH HOH . J 4 HOH B 32 54 54 HOH HOH . J 4 HOH B 33 59 59 HOH HOH . J 4 HOH B 34 62 62 HOH HOH . J 4 HOH B 35 63 63 HOH HOH . J 4 HOH B 36 65 65 HOH HOH . J 4 HOH B 37 67 67 HOH HOH . J 4 HOH B 38 75 75 HOH HOH . J 4 HOH B 39 78 78 HOH HOH . J 4 HOH B 40 79 79 HOH HOH . J 4 HOH B 41 81 81 HOH HOH . J 4 HOH B 42 82 82 HOH HOH . J 4 HOH B 43 83 83 HOH HOH . J 4 HOH B 44 84 84 HOH HOH . J 4 HOH B 45 86 86 HOH HOH . J 4 HOH B 46 87 87 HOH HOH . J 4 HOH B 47 88 88 HOH HOH . J 4 HOH B 48 92 92 HOH HOH . J 4 HOH B 49 93 93 HOH HOH . J 4 HOH B 50 94 94 HOH HOH . J 4 HOH B 51 96 96 HOH HOH . J 4 HOH B 52 99 99 HOH HOH . J 4 HOH B 53 100 100 HOH HOH . J 4 HOH B 54 102 102 HOH HOH . J 4 HOH B 55 105 105 HOH HOH . J 4 HOH B 56 108 108 HOH HOH . J 4 HOH B 57 109 109 HOH HOH . J 4 HOH B 58 110 110 HOH HOH . J 4 HOH B 59 111 111 HOH HOH . J 4 HOH B 60 113 113 HOH HOH . J 4 HOH B 61 115 115 HOH HOH . J 4 HOH B 62 119 119 HOH HOH . J 4 HOH B 63 122 122 HOH HOH . J 4 HOH B 64 124 124 HOH HOH . J 4 HOH B 65 125 125 HOH HOH . J 4 HOH B 66 128 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ACP . . . E 3 31.434 18.04 15.857 1 67.66 ? PB ACP 300 A 1 HETATM 2 O O1B ACP . . . E 3 31.248 19.304 15.11 1 66.94 ? O1B ACP 300 A 1 HETATM 3 O O2B ACP . . . E 3 30.344 17.022 15.82 1 67.62 ? O2B ACP 300 A 1 HETATM 4 C C3B ACP . . . E 3 32.802 17.311 15.264 1 67.81 ? C3B ACP 300 A 1 HETATM 5 P PA ACP . . . E 3 31.082 18.538 18.599 1 67.88 ? PA ACP 300 A 1 HETATM 6 O O1A ACP . . . E 3 30.551 19.933 18.559 1 67.36 ? O1A ACP 300 A 1 HETATM 7 O O2A ACP . . . E 3 30.137 17.403 18.783 1 67.87 ? O2A ACP 300 A 1 HETATM 8 O O3A ACP . . . E 3 31.873 18.295 17.306 1 67.88 ? O3A ACP 300 A 1 HETATM 9 O O5' ACP . . . E 3 32.11 18.466 19.914 1 66.86 ? O5' ACP 300 A 1 HETATM 10 C C5' ACP . . . E 3 33.291 17.648 20.119 1 64.97 ? C5' ACP 300 A 1 HETATM 11 C C4' ACP . . . E 3 33.251 16.276 20.763 1 63.66 ? C4' ACP 300 A 1 HETATM 12 O O4' ACP . . . E 3 32.76 16.385 22.123 1 62.42 ? O4' ACP 300 A 1 HETATM 13 C C3' ACP . . . E 3 32.311 15.267 20.123 1 63.3 ? C3' ACP 300 A 1 HETATM 14 O O3' ACP . . . E 3 32.923 14.646 18.997 1 64.71 ? O3' ACP 300 A 1 HETATM 15 C C2' ACP . . . E 3 32.082 14.265 21.254 1 62.07 ? C2' ACP 300 A 1 HETATM 16 O O2' ACP . . . E 3 33.083 13.269 21.335 1 62.13 ? O2' ACP 300 A 1 HETATM 17 C C1' ACP . . . E 3 32.13 15.166 22.493 1 60.87 ? C1' ACP 300 A 1 HETATM 18 N N9 ACP . . . E 3 30.823 15.469 23.084 1 58.48 ? N9 ACP 300 A 1 HETATM 19 C C8 ACP . . . E 3 29.838 16.297 22.595 1 57.43 ? C8 ACP 300 A 1 HETATM 20 N N7 ACP . . . E 3 28.772 16.358 23.356 1 56.62 ? N7 ACP 300 A 1 HETATM 21 C C5 ACP . . . E 3 29.072 15.516 24.419 1 55.94 ? C5 ACP 300 A 1 HETATM 22 C C6 ACP . . . E 3 28.348 15.147 25.569 1 54.74 ? C6 ACP 300 A 1 HETATM 23 N N6 ACP . . . E 3 27.121 15.595 25.846 1 53.42 ? N6 ACP 300 A 1 HETATM 24 N N1 ACP . . . E 3 28.934 14.288 26.433 1 54.34 ? N1 ACP 300 A 1 HETATM 25 C C2 ACP . . . E 3 30.163 13.834 26.151 1 54.64 ? C2 ACP 300 A 1 HETATM 26 N N3 ACP . . . E 3 30.944 14.104 25.105 1 55.63 ? N3 ACP 300 A 1 HETATM 27 C C4 ACP . . . E 3 30.333 14.962 24.266 1 56.77 ? C4 ACP 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #