data_2PWP # _model_server_result.job_id iHwex1D000nok6GwVU_nCA _model_server_result.datetime_utc '2024-11-04 23:58:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pwp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 2PWP # _exptl.entry_id 2PWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.88 _cell.angle_gamma 90 _cell.entry_id 2PWP _cell.length_a 198.969 _cell.length_b 134.498 _cell.length_c 48.711 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,K 1 1,2 B,C,F,G,H,I,J,L,M 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -4.990214 0 48.454714 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2PWP _atom_sites.fract_transf_matrix[1][1] 0.005026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000518 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SPD A 1 401 401 SPD SPD . E 3 GOL A 1 501 501 GOL GOL . F 2 SPD B 1 401 402 SPD SPD . G 4 SO4 B 1 601 601 SO4 SO4 . H 3 GOL B 1 501 502 GOL GOL . I 2 SPD C 1 401 403 SPD SPD . J 3 GOL C 1 501 503 GOL GOL . K 5 HOH A 1 502 1 HOH HOH . K 5 HOH A 2 503 23 HOH HOH . K 5 HOH A 3 504 25 HOH HOH . K 5 HOH A 4 505 36 HOH HOH . K 5 HOH A 5 506 46 HOH HOH . K 5 HOH A 6 507 53 HOH HOH . K 5 HOH A 7 508 54 HOH HOH . K 5 HOH A 8 509 57 HOH HOH . K 5 HOH A 9 510 77 HOH HOH . K 5 HOH A 10 511 92 HOH HOH . K 5 HOH A 11 512 94 HOH HOH . K 5 HOH A 12 513 97 HOH HOH . K 5 HOH A 13 514 107 HOH HOH . K 5 HOH A 14 515 113 HOH HOH . K 5 HOH A 15 516 115 HOH HOH . K 5 HOH A 16 517 121 HOH HOH . K 5 HOH A 17 518 126 HOH HOH . K 5 HOH A 18 519 128 HOH HOH . K 5 HOH A 19 520 131 HOH HOH . K 5 HOH A 20 521 134 HOH HOH . K 5 HOH A 21 522 136 HOH HOH . K 5 HOH A 22 523 137 HOH HOH . K 5 HOH A 23 524 155 HOH HOH . K 5 HOH A 24 525 161 HOH HOH . K 5 HOH A 25 526 165 HOH HOH . K 5 HOH A 26 527 166 HOH HOH . K 5 HOH A 27 528 167 HOH HOH . K 5 HOH A 28 529 172 HOH HOH . K 5 HOH A 29 530 185 HOH HOH . K 5 HOH A 30 531 187 HOH HOH . K 5 HOH A 31 532 188 HOH HOH . K 5 HOH A 32 533 191 HOH HOH . K 5 HOH A 33 534 192 HOH HOH . K 5 HOH A 34 535 203 HOH HOH . K 5 HOH A 35 536 214 HOH HOH . K 5 HOH A 36 537 215 HOH HOH . K 5 HOH A 37 538 222 HOH HOH . K 5 HOH A 38 539 224 HOH HOH . K 5 HOH A 39 540 228 HOH HOH . K 5 HOH A 40 541 233 HOH HOH . K 5 HOH A 41 542 237 HOH HOH . K 5 HOH A 42 543 240 HOH HOH . K 5 HOH A 43 544 249 HOH HOH . K 5 HOH A 44 545 251 HOH HOH . K 5 HOH A 45 546 254 HOH HOH . K 5 HOH A 46 547 259 HOH HOH . K 5 HOH A 47 548 262 HOH HOH . K 5 HOH A 48 549 267 HOH HOH . K 5 HOH A 49 550 280 HOH HOH . K 5 HOH A 50 551 287 HOH HOH . K 5 HOH A 51 552 288 HOH HOH . K 5 HOH A 52 553 297 HOH HOH . K 5 HOH A 53 554 307 HOH HOH . K 5 HOH A 54 555 315 HOH HOH . K 5 HOH A 55 556 323 HOH HOH . K 5 HOH A 56 557 332 HOH HOH . K 5 HOH A 57 558 340 HOH HOH . K 5 HOH A 58 559 341 HOH HOH . K 5 HOH A 59 560 342 HOH HOH . K 5 HOH A 60 561 366 HOH HOH . K 5 HOH A 61 562 367 HOH HOH . K 5 HOH A 62 563 368 HOH HOH . K 5 HOH A 63 564 369 HOH HOH . L 5 HOH B 1 602 2 HOH HOH . L 5 HOH B 2 603 4 HOH HOH . L 5 HOH B 3 604 19 HOH HOH . L 5 HOH B 4 605 21 HOH HOH . L 5 HOH B 5 606 24 HOH HOH . L 5 HOH B 6 607 26 HOH HOH . L 5 HOH B 7 608 32 HOH HOH . L 5 HOH B 8 609 39 HOH HOH . L 5 HOH B 9 610 43 HOH HOH . L 5 HOH B 10 611 50 HOH HOH . L 5 HOH B 11 612 60 HOH HOH . L 5 HOH B 12 613 61 HOH HOH . L 5 HOH B 13 614 63 HOH HOH . L 5 HOH B 14 615 67 HOH HOH . L 5 HOH B 15 616 68 HOH HOH . L 5 HOH B 16 617 74 HOH HOH . L 5 HOH B 17 618 75 HOH HOH . L 5 HOH B 18 619 79 HOH HOH . L 5 HOH B 19 620 81 HOH HOH . L 5 HOH B 20 621 83 HOH HOH . L 5 HOH B 21 622 86 HOH HOH . L 5 HOH B 22 623 87 HOH HOH . L 5 HOH B 23 624 88 HOH HOH . L 5 HOH B 24 625 93 HOH HOH . L 5 HOH B 25 626 95 HOH HOH . L 5 HOH B 26 627 99 HOH HOH . L 5 HOH B 27 628 100 HOH HOH . L 5 HOH B 28 629 101 HOH HOH . L 5 HOH B 29 630 102 HOH HOH . L 5 HOH B 30 631 106 HOH HOH . L 5 HOH B 31 632 108 HOH HOH . L 5 HOH B 32 633 114 HOH HOH . L 5 HOH B 33 634 117 HOH HOH . L 5 HOH B 34 635 118 HOH HOH . L 5 HOH B 35 636 120 HOH HOH . L 5 HOH B 36 637 122 HOH HOH . L 5 HOH B 37 638 140 HOH HOH . L 5 HOH B 38 639 145 HOH HOH . L 5 HOH B 39 640 146 HOH HOH . L 5 HOH B 40 641 147 HOH HOH . L 5 HOH B 41 642 148 HOH HOH . L 5 HOH B 42 643 154 HOH HOH . L 5 HOH B 43 644 157 HOH HOH . L 5 HOH B 44 645 158 HOH HOH . L 5 HOH B 45 646 159 HOH HOH . L 5 HOH B 46 647 160 HOH HOH . L 5 HOH B 47 648 164 HOH HOH . L 5 HOH B 48 649 171 HOH HOH . L 5 HOH B 49 650 173 HOH HOH . L 5 HOH B 50 651 175 HOH HOH . L 5 HOH B 51 652 179 HOH HOH . L 5 HOH B 52 653 182 HOH HOH . L 5 HOH B 53 654 195 HOH HOH . L 5 HOH B 54 655 196 HOH HOH . L 5 HOH B 55 656 207 HOH HOH . L 5 HOH B 56 657 208 HOH HOH . L 5 HOH B 57 658 209 HOH HOH . L 5 HOH B 58 659 211 HOH HOH . L 5 HOH B 59 660 212 HOH HOH . L 5 HOH B 60 661 213 HOH HOH . L 5 HOH B 61 662 218 HOH HOH . L 5 HOH B 62 663 220 HOH HOH . L 5 HOH B 63 664 229 HOH HOH . L 5 HOH B 64 665 232 HOH HOH . L 5 HOH B 65 666 252 HOH HOH . L 5 HOH B 66 667 274 HOH HOH . L 5 HOH B 67 668 279 HOH HOH . L 5 HOH B 68 669 281 HOH HOH . L 5 HOH B 69 670 282 HOH HOH . L 5 HOH B 70 671 303 HOH HOH . L 5 HOH B 71 672 310 HOH HOH . L 5 HOH B 72 673 311 HOH HOH . L 5 HOH B 73 674 313 HOH HOH . L 5 HOH B 74 675 318 HOH HOH . L 5 HOH B 75 676 320 HOH HOH . L 5 HOH B 76 677 328 HOH HOH . L 5 HOH B 77 678 329 HOH HOH . L 5 HOH B 78 679 330 HOH HOH . L 5 HOH B 79 680 333 HOH HOH . L 5 HOH B 80 681 334 HOH HOH . L 5 HOH B 81 682 335 HOH HOH . L 5 HOH B 82 683 336 HOH HOH . L 5 HOH B 83 684 337 HOH HOH . L 5 HOH B 84 685 338 HOH HOH . L 5 HOH B 85 686 339 HOH HOH . L 5 HOH B 86 687 344 HOH HOH . L 5 HOH B 87 688 350 HOH HOH . L 5 HOH B 88 689 354 HOH HOH . L 5 HOH B 89 690 360 HOH HOH . L 5 HOH B 90 691 362 HOH HOH . L 5 HOH B 91 692 363 HOH HOH . L 5 HOH B 92 693 365 HOH HOH . M 5 HOH C 1 502 3 HOH HOH . M 5 HOH C 2 503 5 HOH HOH . M 5 HOH C 3 504 7 HOH HOH . M 5 HOH C 4 505 8 HOH HOH . M 5 HOH C 5 506 9 HOH HOH . M 5 HOH C 6 507 10 HOH HOH . M 5 HOH C 7 508 12 HOH HOH . M 5 HOH C 8 509 13 HOH HOH . M 5 HOH C 9 510 14 HOH HOH . M 5 HOH C 10 511 16 HOH HOH . M 5 HOH C 11 512 17 HOH HOH . M 5 HOH C 12 513 18 HOH HOH . M 5 HOH C 13 514 20 HOH HOH . M 5 HOH C 14 515 22 HOH HOH . M 5 HOH C 15 516 27 HOH HOH . M 5 HOH C 16 517 28 HOH HOH . M 5 HOH C 17 518 30 HOH HOH . M 5 HOH C 18 519 33 HOH HOH . M 5 HOH C 19 520 34 HOH HOH . M 5 HOH C 20 521 35 HOH HOH . M 5 HOH C 21 522 37 HOH HOH . M 5 HOH C 22 523 38 HOH HOH . M 5 HOH C 23 524 40 HOH HOH . M 5 HOH C 24 525 41 HOH HOH . M 5 HOH C 25 526 42 HOH HOH . M 5 HOH C 26 527 44 HOH HOH . M 5 HOH C 27 528 45 HOH HOH . M 5 HOH C 28 529 47 HOH HOH . M 5 HOH C 29 530 48 HOH HOH . M 5 HOH C 30 531 49 HOH HOH . M 5 HOH C 31 532 51 HOH HOH . M 5 HOH C 32 533 52 HOH HOH . M 5 HOH C 33 534 55 HOH HOH . M 5 HOH C 34 535 56 HOH HOH . M 5 HOH C 35 536 58 HOH HOH . M 5 HOH C 36 537 59 HOH HOH . M 5 HOH C 37 538 62 HOH HOH . M 5 HOH C 38 539 64 HOH HOH . M 5 HOH C 39 540 65 HOH HOH . M 5 HOH C 40 541 66 HOH HOH . M 5 HOH C 41 542 69 HOH HOH . M 5 HOH C 42 543 70 HOH HOH . M 5 HOH C 43 544 71 HOH HOH . M 5 HOH C 44 545 72 HOH HOH . M 5 HOH C 45 546 73 HOH HOH . M 5 HOH C 46 547 76 HOH HOH . M 5 HOH C 47 548 78 HOH HOH . M 5 HOH C 48 549 84 HOH HOH . M 5 HOH C 49 550 89 HOH HOH . M 5 HOH C 50 551 90 HOH HOH . M 5 HOH C 51 552 91 HOH HOH . M 5 HOH C 52 553 96 HOH HOH . M 5 HOH C 53 554 98 HOH HOH . M 5 HOH C 54 555 103 HOH HOH . M 5 HOH C 55 556 104 HOH HOH . M 5 HOH C 56 557 105 HOH HOH . M 5 HOH C 57 558 110 HOH HOH . M 5 HOH C 58 559 111 HOH HOH . M 5 HOH C 59 560 112 HOH HOH . M 5 HOH C 60 561 116 HOH HOH . M 5 HOH C 61 562 123 HOH HOH . M 5 HOH C 62 563 124 HOH HOH . M 5 HOH C 63 564 125 HOH HOH . M 5 HOH C 64 565 127 HOH HOH . M 5 HOH C 65 566 129 HOH HOH . M 5 HOH C 66 567 130 HOH HOH . M 5 HOH C 67 568 132 HOH HOH . M 5 HOH C 68 569 133 HOH HOH . M 5 HOH C 69 570 135 HOH HOH . M 5 HOH C 70 571 138 HOH HOH . M 5 HOH C 71 572 139 HOH HOH . M 5 HOH C 72 573 141 HOH HOH . M 5 HOH C 73 574 142 HOH HOH . M 5 HOH C 74 575 143 HOH HOH . M 5 HOH C 75 576 144 HOH HOH . M 5 HOH C 76 577 149 HOH HOH . M 5 HOH C 77 578 150 HOH HOH . M 5 HOH C 78 579 151 HOH HOH . M 5 HOH C 79 580 152 HOH HOH . M 5 HOH C 80 581 153 HOH HOH . M 5 HOH C 81 582 156 HOH HOH . M 5 HOH C 82 583 162 HOH HOH . M 5 HOH C 83 584 163 HOH HOH . M 5 HOH C 84 585 168 HOH HOH . M 5 HOH C 85 586 170 HOH HOH . M 5 HOH C 86 587 174 HOH HOH . M 5 HOH C 87 588 176 HOH HOH . M 5 HOH C 88 589 177 HOH HOH . M 5 HOH C 89 590 180 HOH HOH . M 5 HOH C 90 591 184 HOH HOH . M 5 HOH C 91 592 186 HOH HOH . M 5 HOH C 92 593 189 HOH HOH . M 5 HOH C 93 594 190 HOH HOH . M 5 HOH C 94 595 193 HOH HOH . M 5 HOH C 95 596 194 HOH HOH . M 5 HOH C 96 597 197 HOH HOH . M 5 HOH C 97 598 198 HOH HOH . M 5 HOH C 98 599 199 HOH HOH . M 5 HOH C 99 600 201 HOH HOH . M 5 HOH C 100 601 204 HOH HOH . M 5 HOH C 101 602 205 HOH HOH . M 5 HOH C 102 603 210 HOH HOH . M 5 HOH C 103 604 216 HOH HOH . M 5 HOH C 104 605 221 HOH HOH . M 5 HOH C 105 606 226 HOH HOH . M 5 HOH C 106 607 234 HOH HOH . M 5 HOH C 107 608 235 HOH HOH . M 5 HOH C 108 609 238 HOH HOH . M 5 HOH C 109 610 239 HOH HOH . M 5 HOH C 110 611 242 HOH HOH . M 5 HOH C 111 612 243 HOH HOH . M 5 HOH C 112 613 244 HOH HOH . M 5 HOH C 113 614 245 HOH HOH . M 5 HOH C 114 615 246 HOH HOH . M 5 HOH C 115 616 247 HOH HOH . M 5 HOH C 116 617 248 HOH HOH . M 5 HOH C 117 618 255 HOH HOH . M 5 HOH C 118 619 257 HOH HOH . M 5 HOH C 119 620 263 HOH HOH . M 5 HOH C 120 621 266 HOH HOH . M 5 HOH C 121 622 269 HOH HOH . M 5 HOH C 122 623 270 HOH HOH . M 5 HOH C 123 624 275 HOH HOH . M 5 HOH C 124 625 276 HOH HOH . M 5 HOH C 125 626 277 HOH HOH . M 5 HOH C 126 627 292 HOH HOH . M 5 HOH C 127 628 293 HOH HOH . M 5 HOH C 128 629 309 HOH HOH . M 5 HOH C 129 630 316 HOH HOH . M 5 HOH C 130 631 317 HOH HOH . M 5 HOH C 131 632 321 HOH HOH . M 5 HOH C 132 633 322 HOH HOH . M 5 HOH C 133 634 326 HOH HOH . M 5 HOH C 134 635 331 HOH HOH . M 5 HOH C 135 636 345 HOH HOH . M 5 HOH C 136 637 346 HOH HOH . M 5 HOH C 137 638 347 HOH HOH . M 5 HOH C 138 639 348 HOH HOH . M 5 HOH C 139 640 349 HOH HOH . M 5 HOH C 140 641 351 HOH HOH . M 5 HOH C 141 642 352 HOH HOH . M 5 HOH C 142 643 353 HOH HOH . M 5 HOH C 143 644 355 HOH HOH . M 5 HOH C 144 645 356 HOH HOH . M 5 HOH C 145 646 357 HOH HOH . M 5 HOH C 146 647 358 HOH HOH . M 5 HOH C 147 648 359 HOH HOH . M 5 HOH C 148 649 361 HOH HOH . M 5 HOH C 149 650 364 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 29.545 149.317 43.606 1 45.21 ? C1 GOL 501 C 1 HETATM 2 O O1 GOL . . . J 3 29.269 149.548 42.242 1 61.61 ? O1 GOL 501 C 1 HETATM 3 C C2 GOL . . . J 3 28.383 149.813 44.46 1 56.88 ? C2 GOL 501 C 1 HETATM 4 O O2 GOL . . . J 3 27.175 149.275 43.96 1 63.82 ? O2 GOL 501 C 1 HETATM 5 C C3 GOL . . . J 3 28.602 149.33 45.889 1 50.59 ? C3 GOL 501 C 1 HETATM 6 O O3 GOL . . . J 3 27.466 149.62 46.671 1 42.4 ? O3 GOL 501 C 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #