data_2PX3 # _model_server_result.job_id Pm6TftZrAV3pvO-wd_St4A _model_server_result.datetime_utc '2025-04-21 11:12:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2px3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2PX3 # _exptl.entry_id 2PX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PX3 _cell.length_a 80.965 _cell.length_b 80.965 _cell.length_c 126.137 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2G GTP . A GTP 1 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 C O2B GTP . A GTP 1 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 D O HOH . A HOH 2 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 D O HOH . A HOH 3 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 D O HOH . A HOH 4 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc6 A OG1 THR 119 A THR 189 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 2PX3 _atom_sites.fract_transf_matrix[1][1] 0.012351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1000 1000 MG MG . C 3 GTP A 1 1 1 GTP GTP . D 4 HOH A 1 2 1 HOH HOH . D 4 HOH A 2 3 2 HOH HOH . D 4 HOH A 3 4 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 1.542 -3.532 3.055 1 33.77 ? PG GTP 1 A 1 HETATM 2 O O1G GTP . . . C 3 1.723 -3.573 1.626 1 32.65 ? O1G GTP 1 A 1 HETATM 3 O O2G GTP . . . C 3 2.562 -2.724 3.824 1 30.89 ? O2G GTP 1 A 1 HETATM 4 O O3G GTP . . . C 3 1.414 -4.967 3.589 1 33.12 ? O3G GTP 1 A 1 HETATM 5 O O3B GTP . . . C 3 0.038 -2.669 3.194 1 31.24 ? O3B GTP 1 A 1 HETATM 6 P PB GTP . . . C 3 -0.665 -2.281 4.508 1 28.82 ? PB GTP 1 A 1 HETATM 7 O O1B GTP . . . C 3 -1.25 -3.456 5.188 1 26.33 ? O1B GTP 1 A 1 HETATM 8 O O2B GTP . . . C 3 0.33 -1.46 5.348 1 27.68 ? O2B GTP 1 A 1 HETATM 9 O O3A GTP . . . C 3 -1.82 -1.426 3.778 1 26.37 ? O3A GTP 1 A 1 HETATM 10 P PA GTP . . . C 3 -1.995 0.131 3.83 1 25.68 ? PA GTP 1 A 1 HETATM 11 O O1A GTP . . . C 3 -2.104 0.595 5.177 1 27.31 ? O1A GTP 1 A 1 HETATM 12 O O2A GTP . . . C 3 -0.878 0.748 3.076 1 24.08 ? O2A GTP 1 A 1 HETATM 13 O O5' GTP . . . C 3 -3.406 0.367 3.117 1 22.86 ? O5' GTP 1 A 1 HETATM 14 C C5' GTP . . . C 3 -3.576 0.012 1.774 1 20.2 ? C5' GTP 1 A 1 HETATM 15 C C4' GTP . . . C 3 -4.766 0.747 1.191 1 19.1 ? C4' GTP 1 A 1 HETATM 16 O O4' GTP . . . C 3 -6.003 0.387 1.853 1 19.3 ? O4' GTP 1 A 1 HETATM 17 C C3' GTP . . . C 3 -4.695 2.267 1.315 1 19.02 ? C3' GTP 1 A 1 HETATM 18 O O3' GTP . . . C 3 -5.288 2.89 0.144 1 21.55 ? O3' GTP 1 A 1 HETATM 19 C C2' GTP . . . C 3 -5.489 2.534 2.537 1 18.22 ? C2' GTP 1 A 1 HETATM 20 O O2' GTP . . . C 3 -5.859 3.929 2.744 1 18.66 ? O2' GTP 1 A 1 HETATM 21 C C1' GTP . . . C 3 -6.656 1.547 2.366 1 17.72 ? C1' GTP 1 A 1 HETATM 22 N N9 GTP . . . C 3 -7.375 1.231 3.627 1 16.36 ? N9 GTP 1 A 1 HETATM 23 C C8 GTP . . . C 3 -6.809 0.982 4.879 1 14.88 ? C8 GTP 1 A 1 HETATM 24 N N7 GTP . . . C 3 -7.764 0.745 5.775 1 15.49 ? N7 GTP 1 A 1 HETATM 25 C C5 GTP . . . C 3 -8.99 0.842 5.091 1 13.92 ? C5 GTP 1 A 1 HETATM 26 C C6 GTP . . . C 3 -10.313 0.701 5.478 1 14.3 ? C6 GTP 1 A 1 HETATM 27 O O6 GTP . . . C 3 -10.783 0.448 6.576 1 16.54 ? O6 GTP 1 A 1 HETATM 28 N N1 GTP . . . C 3 -11.3 0.872 4.481 1 15.25 ? N1 GTP 1 A 1 HETATM 29 C C2 GTP . . . C 3 -11.007 1.164 3.17 1 14.23 ? C2 GTP 1 A 1 HETATM 30 N N2 GTP . . . C 3 -12.028 1.302 2.27 1 12.8 ? N2 GTP 1 A 1 HETATM 31 N N3 GTP . . . C 3 -9.728 1.301 2.809 1 14.38 ? N3 GTP 1 A 1 HETATM 32 C C4 GTP . . . C 3 -8.737 1.14 3.764 1 14.76 ? C4 GTP 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #