data_2PX4
#
_model_server_result.job_id            ncdfV-D09Ytc-GaStHA8lg 
_model_server_result.datetime_utc      '2024-11-22 23:55:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2px4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":500}' 
#
_entry.id    2PX4 
#
_exptl.entry_id    2PX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.6 
_cell.angle_gamma         90 
_cell.entry_id            2PX4 
_cell.length_a            46.4 
_cell.length_b            68.2 
_cell.length_c            50.2 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             U 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 290 n n 
N HN1 SAH sing 291 n n 
N HN2 SAH sing 292 n n 
CA CB SAH sing 293 n n 
CA C SAH sing 294 n n 
CA HA SAH sing 295 n n 
CB CG SAH sing 296 n n 
CB HB1 SAH sing 297 n n 
CB HB2 SAH sing 298 n n 
CG SD SAH sing 299 n n 
CG HG1 SAH sing 300 n n 
CG HG2 SAH sing 301 n n 
SD C5' SAH sing 302 n n 
C O SAH doub 303 n n 
C OXT SAH sing 304 n n 
OXT HXT SAH sing 305 n n 
C5' C4' SAH sing 306 n n 
C5' "H5'1" SAH sing 307 n n 
C5' "H5'2" SAH sing 308 n n 
C4' O4' SAH sing 309 n n 
C4' C3' SAH sing 310 n n 
C4' H4' SAH sing 311 n n 
O4' C1' SAH sing 312 n n 
C3' O3' SAH sing 313 n n 
C3' C2' SAH sing 314 n n 
C3' H3' SAH sing 315 n n 
O3' HO3' SAH sing 316 n n 
C2' O2' SAH sing 317 n n 
C2' C1' SAH sing 318 n n 
C2' H2' SAH sing 319 n n 
O2' HO2' SAH sing 320 n n 
C1' N9 SAH sing 321 n n 
C1' H1' SAH sing 322 n n 
N9 C8 SAH sing 323 n y 
N9 C4 SAH sing 324 n y 
C8 N7 SAH doub 325 n y 
C8 H8 SAH sing 326 n n 
N7 C5 SAH sing 327 n y 
C5 C6 SAH sing 328 n y 
C5 C4 SAH doub 329 n y 
C6 N6 SAH sing 330 n n 
C6 N1 SAH doub 331 n y 
N6 HN61 SAH sing 332 n n 
N6 HN62 SAH sing 333 n n 
N1 C2 SAH sing 334 n y 
C2 N3 SAH doub 335 n y 
C2 H2 SAH sing 336 n n 
N3 C4 SAH sing 337 n y 
#
_atom_sites.entry_id                     2PX4 
_atom_sites.fract_transf_matrix[1][1]    0.021552 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.010326 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 890 890 CL CL . 
C 2 CL A 1 925 925 CL CL . 
D 2 CL A 1 894 894 CL CL . 
E 3 SO4 A 1 601 601 SO4 SO4 . 
F 3 SO4 A 1 602 602 SO4 SO4 . 
G 3 SO4 A 1 603 603 SO4 SO4 . 
H 3 SO4 A 1 604 604 SO4 SO4 . 
I 3 SO4 A 1 605 605 SO4 SO4 . 
J 3 SO4 A 1 606 606 SO4 SO4 . 
K 3 SO4 A 1 607 607 SO4 SO4 . 
L 4 UNX A 1 801 801 UNX UNX . 
M 4 UNX A 1 802 802 UNX UNX . 
N 4 UNX A 1 803 803 UNX UNX . 
O 4 UNX A 1 804 804 UNX UNX . 
P 4 UNX A 1 805 805 UNX UNX . 
Q 4 UNX A 1 806 806 UNX UNX . 
R 4 UNX A 1 807 807 UNX UNX . 
S 4 UNX A 1 808 808 UNX UNX . 
T 4 UNX A 1 809 809 UNX UNX . 
U 5 SAH A 1 500 500 SAH SAH . 
V 6 GOL A 1 701 701 GOL GOL . 
W 7 HOH A 1 889 889 HOH HOH . 
W 7 HOH A 2 891 891 HOH HOH . 
W 7 HOH A 3 892 892 HOH HOH . 
W 7 HOH A 4 893 893 HOH HOH . 
W 7 HOH A 5 895 895 HOH HOH . 
W 7 HOH A 6 896 896 HOH HOH . 
W 7 HOH A 7 897 897 HOH HOH . 
W 7 HOH A 8 899 899 HOH HOH . 
W 7 HOH A 9 900 900 HOH HOH . 
W 7 HOH A 10 901 901 HOH HOH . 
W 7 HOH A 11 902 902 HOH HOH . 
W 7 HOH A 12 903 903 HOH HOH . 
W 7 HOH A 13 904 904 HOH HOH . 
W 7 HOH A 14 905 905 HOH HOH . 
W 7 HOH A 15 906 906 HOH HOH . 
W 7 HOH A 16 907 907 HOH HOH . 
W 7 HOH A 17 908 908 HOH HOH . 
W 7 HOH A 18 909 909 HOH HOH . 
W 7 HOH A 19 911 911 HOH HOH . 
W 7 HOH A 20 912 912 HOH HOH . 
W 7 HOH A 21 913 913 HOH HOH . 
W 7 HOH A 22 914 914 HOH HOH . 
W 7 HOH A 23 915 915 HOH HOH . 
W 7 HOH A 24 916 916 HOH HOH . 
W 7 HOH A 25 917 917 HOH HOH . 
W 7 HOH A 26 918 918 HOH HOH . 
W 7 HOH A 27 919 919 HOH HOH . 
W 7 HOH A 28 920 920 HOH HOH . 
W 7 HOH A 29 922 922 HOH HOH . 
W 7 HOH A 30 923 923 HOH HOH . 
W 7 HOH A 31 924 924 HOH HOH . 
W 7 HOH A 32 926 926 HOH HOH . 
W 7 HOH A 33 927 927 HOH HOH . 
W 7 HOH A 34 928 928 HOH HOH . 
W 7 HOH A 35 929 929 HOH HOH . 
W 7 HOH A 36 930 930 HOH HOH . 
W 7 HOH A 37 931 931 HOH HOH . 
W 7 HOH A 38 932 932 HOH HOH . 
W 7 HOH A 39 933 933 HOH HOH . 
W 7 HOH A 40 934 934 HOH HOH . 
W 7 HOH A 41 935 935 HOH HOH . 
W 7 HOH A 42 936 936 HOH HOH . 
W 7 HOH A 43 937 937 HOH HOH . 
W 7 HOH A 44 938 938 HOH HOH . 
W 7 HOH A 45 939 939 HOH HOH . 
W 7 HOH A 46 940 940 HOH HOH . 
W 7 HOH A 47 941 941 HOH HOH . 
W 7 HOH A 48 943 943 HOH HOH . 
W 7 HOH A 49 945 945 HOH HOH . 
W 7 HOH A 50 946 946 HOH HOH . 
W 7 HOH A 51 947 947 HOH HOH . 
W 7 HOH A 52 948 948 HOH HOH . 
W 7 HOH A 53 949 949 HOH HOH . 
W 7 HOH A 54 950 950 HOH HOH . 
W 7 HOH A 55 951 951 HOH HOH . 
W 7 HOH A 56 953 953 HOH HOH . 
W 7 HOH A 57 954 954 HOH HOH . 
W 7 HOH A 58 956 956 HOH HOH . 
W 7 HOH A 59 957 957 HOH HOH . 
W 7 HOH A 60 959 959 HOH HOH . 
W 7 HOH A 61 960 960 HOH HOH . 
W 7 HOH A 62 961 961 HOH HOH . 
W 7 HOH A 63 962 962 HOH HOH . 
W 7 HOH A 64 963 963 HOH HOH . 
W 7 HOH A 65 964 964 HOH HOH . 
W 7 HOH A 66 965 965 HOH HOH . 
W 7 HOH A 67 967 967 HOH HOH . 
W 7 HOH A 68 968 968 HOH HOH . 
W 7 HOH A 69 970 970 HOH HOH . 
W 7 HOH A 70 971 971 HOH HOH . 
W 7 HOH A 71 972 972 HOH HOH . 
W 7 HOH A 72 973 973 HOH HOH . 
W 7 HOH A 73 974 974 HOH HOH . 
W 7 HOH A 74 977 977 HOH HOH . 
W 7 HOH A 75 978 978 HOH HOH . 
W 7 HOH A 76 979 979 HOH HOH . 
W 7 HOH A 77 980 980 HOH HOH . 
W 7 HOH A 78 981 981 HOH HOH . 
W 7 HOH A 79 982 982 HOH HOH . 
W 7 HOH A 80 983 983 HOH HOH . 
W 7 HOH A 81 984 984 HOH HOH . 
W 7 HOH A 82 985 985 HOH HOH . 
W 7 HOH A 83 986 986 HOH HOH . 
W 7 HOH A 84 987 987 HOH HOH . 
W 7 HOH A 85 988 988 HOH HOH . 
W 7 HOH A 86 989 989 HOH HOH . 
W 7 HOH A 87 990 990 HOH HOH . 
W 7 HOH A 88 991 991 HOH HOH . 
W 7 HOH A 89 992 992 HOH HOH . 
W 7 HOH A 90 993 993 HOH HOH . 
W 7 HOH A 91 994 994 HOH HOH . 
W 7 HOH A 92 995 995 HOH HOH . 
W 7 HOH A 93 996 996 HOH HOH . 
W 7 HOH A 94 997 997 HOH HOH . 
W 7 HOH A 95 998 998 HOH HOH . 
W 7 HOH A 96 999 999 HOH HOH . 
W 7 HOH A 97 1000 1000 HOH HOH . 
W 7 HOH A 98 1001 1001 HOH HOH . 
W 7 HOH A 99 1003 1003 HOH HOH . 
W 7 HOH A 100 1004 1004 HOH HOH . 
W 7 HOH A 101 1005 1005 HOH HOH . 
W 7 HOH A 102 1006 1006 HOH HOH . 
W 7 HOH A 103 1007 1007 HOH HOH . 
W 7 HOH A 104 1008 1008 HOH HOH . 
W 7 HOH A 105 1009 1009 HOH HOH . 
W 7 HOH A 106 1011 1011 HOH HOH . 
W 7 HOH A 107 1012 1012 HOH HOH . 
W 7 HOH A 108 1013 1013 HOH HOH . 
W 7 HOH A 109 1014 1014 HOH HOH . 
W 7 HOH A 110 1015 1015 HOH HOH . 
W 7 HOH A 111 1017 1017 HOH HOH . 
W 7 HOH A 112 1018 1018 HOH HOH . 
W 7 HOH A 113 1019 1019 HOH HOH . 
W 7 HOH A 114 1020 1020 HOH HOH . 
W 7 HOH A 115 1021 1021 HOH HOH . 
W 7 HOH A 116 1022 1022 HOH HOH . 
W 7 HOH A 117 1023 1023 HOH HOH . 
W 7 HOH A 118 1024 1024 HOH HOH . 
W 7 HOH A 119 1025 1025 HOH HOH . 
W 7 HOH A 120 1026 1026 HOH HOH . 
W 7 HOH A 121 1028 1028 HOH HOH . 
W 7 HOH A 122 1029 1029 HOH HOH . 
W 7 HOH A 123 1030 1030 HOH HOH . 
W 7 HOH A 124 1031 1031 HOH HOH . 
W 7 HOH A 125 1032 1032 HOH HOH . 
W 7 HOH A 126 1034 1034 HOH HOH . 
W 7 HOH A 127 1035 1035 HOH HOH . 
W 7 HOH A 128 1036 1036 HOH HOH . 
W 7 HOH A 129 1038 1038 HOH HOH . 
W 7 HOH A 130 1039 1039 HOH HOH . 
W 7 HOH A 131 1040 1040 HOH HOH . 
W 7 HOH A 132 1041 1041 HOH HOH . 
W 7 HOH A 133 1042 1042 HOH HOH . 
W 7 HOH A 134 1043 1043 HOH HOH . 
W 7 HOH A 135 1044 1044 HOH HOH . 
W 7 HOH A 136 1045 1045 HOH HOH . 
W 7 HOH A 137 1046 1046 HOH HOH . 
W 7 HOH A 138 1047 1047 HOH HOH . 
W 7 HOH A 139 1049 1049 HOH HOH . 
W 7 HOH A 140 1050 1050 HOH HOH . 
W 7 HOH A 141 1051 1051 HOH HOH . 
W 7 HOH A 142 1052 1052 HOH HOH . 
W 7 HOH A 143 1053 1053 HOH HOH . 
W 7 HOH A 144 1054 1054 HOH HOH . 
W 7 HOH A 145 1055 1055 HOH HOH . 
W 7 HOH A 146 1056 1056 HOH HOH . 
W 7 HOH A 147 1057 1057 HOH HOH . 
W 7 HOH A 148 1058 1058 HOH HOH . 
W 7 HOH A 149 1059 1059 HOH HOH . 
W 7 HOH A 150 1060 1060 HOH HOH . 
W 7 HOH A 151 1062 1062 HOH HOH . 
W 7 HOH A 152 1063 1063 HOH HOH . 
W 7 HOH A 153 1064 1064 HOH HOH . 
W 7 HOH A 154 1065 1065 HOH HOH . 
W 7 HOH A 155 1066 1066 HOH HOH . 
W 7 HOH A 156 1067 1067 HOH HOH . 
W 7 HOH A 157 1100 1100 HOH HOH . 
W 7 HOH A 158 1101 1101 HOH HOH . 
W 7 HOH A 159 1104 1104 HOH HOH . 
W 7 HOH A 160 1105 1105 HOH HOH . 
W 7 HOH A 161 1106 1106 HOH HOH . 
W 7 HOH A 162 1107 1107 HOH HOH . 
W 7 HOH A 163 1110 1110 HOH HOH . 
W 7 HOH A 164 1112 1112 HOH HOH . 
W 7 HOH A 165 1113 1113 HOH HOH . 
W 7 HOH A 166 1116 1116 HOH HOH . 
W 7 HOH A 167 1117 1117 HOH HOH . 
W 7 HOH A 168 1118 1118 HOH HOH . 
W 7 HOH A 169 1120 1120 HOH HOH . 
W 7 HOH A 170 1121 1121 HOH HOH . 
W 7 HOH A 171 1122 1122 HOH HOH . 
W 7 HOH A 172 1150 1150 HOH HOH . 
W 7 HOH A 173 1151 1151 HOH HOH . 
W 7 HOH A 174 1152 1152 HOH HOH . 
W 7 HOH A 175 1153 1153 HOH HOH . 
W 7 HOH A 176 1154 1154 HOH HOH . 
W 7 HOH A 177 1155 1155 HOH HOH . 
W 7 HOH A 178 1156 1156 HOH HOH . 
W 7 HOH A 179 1160 1160 HOH HOH . 
W 7 HOH A 180 1161 1161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . U 5 15.509 0.428 21.706 1 25.68 ? N SAH 500 A 1 
HETATM 2 C CA SAH . . . U 5 16.312 1.212 22.701 1 29.29 ? CA SAH 500 A 1 
HETATM 3 C CB SAH . . . U 5 15.504 2.384 23.237 1 25.96 ? CB SAH 500 A 1 
HETATM 4 C CG SAH . . . U 5 15.458 3.561 22.285 1 26.28 ? CG SAH 500 A 1 
HETATM 5 S SD SAH . . . U 5 14.457 4.891 22.979 1 32.84 ? SD SAH 500 A 1 
HETATM 6 C C SAH . . . U 5 16.748 0.352 23.881 1 26.82 ? C SAH 500 A 1 
HETATM 7 O O SAH . . . U 5 16.415 -0.82 23.955 1 27.13 ? O SAH 500 A 1 
HETATM 8 O OXT SAH . . . U 5 17.446 0.81 24.787 1 32.24 ? OXT SAH 500 A 1 
HETATM 9 C C5' SAH . . . U 5 14.542 5.885 21.469 1 22.42 ? C5' SAH 500 A 1 
HETATM 10 C C4' SAH . . . U 5 15.868 6.626 21.299 1 27.85 ? C4' SAH 500 A 1 
HETATM 11 O O4' SAH . . . U 5 15.845 7.34 20.076 1 23.74 ? O4' SAH 500 A 1 
HETATM 12 C C3' SAH . . . U 5 16.172 7.642 22.401 1 25.19 ? C3' SAH 500 A 1 
HETATM 13 O O3' SAH . . . U 5 17.394 7.329 23.032 1 34.09 ? O3' SAH 500 A 1 
HETATM 14 C C2' SAH . . . U 5 16.291 8.976 21.695 1 24.79 ? C2' SAH 500 A 1 
HETATM 15 O O2' SAH . . . U 5 17.347 9.751 22.213 1 32.74 ? O2' SAH 500 A 1 
HETATM 16 C C1' SAH . . . U 5 16.546 8.553 20.256 1 29.88 ? C1' SAH 500 A 1 
HETATM 17 N N9 SAH . . . U 5 16.123 9.523 19.235 1 28.63 ? N9 SAH 500 A 1 
HETATM 18 C C8 SAH . . . U 5 15.008 10.316 19.223 1 26.95 ? C8 SAH 500 A 1 
HETATM 19 N N7 SAH . . . U 5 15.016 11.04 18.091 1 24.39 ? N7 SAH 500 A 1 
HETATM 20 C C5 SAH . . . U 5 16.118 10.727 17.377 1 27.38 ? C5 SAH 500 A 1 
HETATM 21 C C6 SAH . . . U 5 16.607 11.169 16.153 1 28.06 ? C6 SAH 500 A 1 
HETATM 22 N N6 SAH . . . U 5 15.956 12.087 15.441 1 28.5 ? N6 SAH 500 A 1 
HETATM 23 N N1 SAH . . . U 5 17.786 10.63 15.68 1 28.61 ? N1 SAH 500 A 1 
HETATM 24 C C2 SAH . . . U 5 18.473 9.669 16.405 1 30.72 ? C2 SAH 500 A 1 
HETATM 25 N N3 SAH . . . U 5 17.98 9.241 17.621 1 24.45 ? N3 SAH 500 A 1 
HETATM 26 C C4 SAH . . . U 5 16.82 9.764 18.09 1 27.85 ? C4 SAH 500 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#