data_2PX6 # _model_server_result.job_id 4l8M6B5QxtTNeGZCt6x_gA _model_server_result.datetime_utc '2024-11-24 19:13:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2px6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":61}' # _entry.id 2PX6 # _exptl.entry_id 2PX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.75 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3-HYDROXYHEXADECANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.82 _cell.angle_gamma 90 _cell.entry_id 2PX6 _cell.length_a 41.86 _cell.length_b 94.32 _cell.length_c 69.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 113 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 2308 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1' _struct_conn.ptnr2_label_comp_id DH9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DH9 _struct_conn.ptnr2_auth_seq_id 3000 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.379 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H55 N O6' _chem_comp.formula_weight 513.75 _chem_comp.id DH9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3-HYDROXYHEXADECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 DH9 sing 83 n n C22 H221 DH9 sing 84 n n C22 H222 DH9 sing 85 n n C22 H223 DH9 sing 86 n n C21 C20 DH9 sing 87 n n C21 H211 DH9 sing 88 n n C21 H212 DH9 sing 89 n n C20 C19 DH9 sing 90 n n C20 H201 DH9 sing 91 n n C20 H202 DH9 sing 92 n n C19 C18 DH9 sing 93 n n C19 H191 DH9 sing 94 n n C19 H192 DH9 sing 95 n n C18 C17 DH9 sing 96 n n C18 H181 DH9 sing 97 n n C18 H182 DH9 sing 98 n n C17 C2' DH9 sing 99 n n C17 H171 DH9 sing 100 n n C17 H172 DH9 sing 101 n n C2' C3' DH9 sing 102 n n C2' C1' DH9 sing 103 n n C2' H2' DH9 sing 104 n n C1' O1' DH9 doub 105 n n C1' O2' DH9 sing 106 n n O2' HO2' DH9 sing 107 n n C3' O3' DH9 sing 108 n n C3' C4' DH9 sing 109 n n C3' H3' DH9 sing 110 n n O3' HO3' DH9 sing 111 n n C4' C5' DH9 sing 112 n n C4' "H4'1" DH9 sing 113 n n C4' "H4'2" DH9 sing 114 n n C5' O4' DH9 sing 115 n n C5' C6' DH9 sing 116 n n C5' H5' DH9 sing 117 n n O4' C23 DH9 sing 118 n n C23 C24 DH9 sing 119 n n C23 O5' DH9 doub 120 n n C24 N1' DH9 sing 121 n n C24 C26 DH9 sing 122 n n C24 H24 DH9 sing 123 n n C26 C27 DH9 sing 124 n n C26 H261 DH9 sing 125 n n C26 H262 DH9 sing 126 n n C27 C28 DH9 sing 127 n n C27 C29 DH9 sing 128 n n C27 H27 DH9 sing 129 n n C28 H281 DH9 sing 130 n n C28 H282 DH9 sing 131 n n C28 H283 DH9 sing 132 n n C29 H291 DH9 sing 133 n n C29 H292 DH9 sing 134 n n C29 H293 DH9 sing 135 n n N1' C25 DH9 sing 136 n n N1' HN1' DH9 sing 137 n n C25 O6' DH9 doub 138 n n C25 H25 DH9 sing 139 n n C6' C7' DH9 sing 140 n n C6' "H6'1" DH9 sing 141 n n C6' "H6'2" DH9 sing 142 n n C7' C8' DH9 sing 143 n n C7' "H7'1" DH9 sing 144 n n C7' "H7'2" DH9 sing 145 n n C8' C9' DH9 sing 146 n n C8' "H8'1" DH9 sing 147 n n C8' "H8'2" DH9 sing 148 n n C9' C10 DH9 sing 149 n n C9' "H9'1" DH9 sing 150 n n C9' "H9'2" DH9 sing 151 n n C10 C11 DH9 sing 152 n n C10 H101 DH9 sing 153 n n C10 H102 DH9 sing 154 n n C11 C12 DH9 sing 155 n n C11 H111 DH9 sing 156 n n C11 H112 DH9 sing 157 n n C12 C13 DH9 sing 158 n n C12 H121 DH9 sing 159 n n C12 H122 DH9 sing 160 n n C13 C14 DH9 sing 161 n n C13 H131 DH9 sing 162 n n C13 H132 DH9 sing 163 n n C14 C15 DH9 sing 164 n n C14 H141 DH9 sing 165 n n C14 H142 DH9 sing 166 n n C15 C16 DH9 sing 167 n n C15 H151 DH9 sing 168 n n C15 H152 DH9 sing 169 n n C16 H161 DH9 sing 170 n n C16 H162 DH9 sing 171 n n C16 H163 DH9 sing 172 n n # _atom_sites.entry_id 2PX6 _atom_sites.fract_transf_matrix[1][1] 0.023889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002435 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DH9 A 1 3000 3000 DH9 DH9 . D 2 DH9 B 1 61 61 DH9 DH9 . E 3 DTT B 1 71 71 DTT DTT . F 4 HOH A 1 1 1 HOH HOH . F 4 HOH A 2 2 2 HOH HOH . F 4 HOH A 3 3 3 HOH HOH . F 4 HOH A 4 4 4 HOH HOH . F 4 HOH A 5 11 11 HOH HOH . F 4 HOH A 6 12 12 HOH HOH . F 4 HOH A 7 18 18 HOH HOH . F 4 HOH A 8 20 20 HOH HOH . F 4 HOH A 9 25 25 HOH HOH . F 4 HOH A 10 26 26 HOH HOH . F 4 HOH A 11 27 27 HOH HOH . F 4 HOH A 12 28 28 HOH HOH . F 4 HOH A 13 29 29 HOH HOH . F 4 HOH A 14 30 30 HOH HOH . F 4 HOH A 15 34 34 HOH HOH . F 4 HOH A 16 35 35 HOH HOH . F 4 HOH A 17 36 36 HOH HOH . F 4 HOH A 18 37 37 HOH HOH . F 4 HOH A 19 38 38 HOH HOH . F 4 HOH A 20 39 39 HOH HOH . F 4 HOH A 21 40 40 HOH HOH . F 4 HOH A 22 43 43 HOH HOH . F 4 HOH A 23 49 49 HOH HOH . F 4 HOH A 24 50 50 HOH HOH . F 4 HOH A 25 52 52 HOH HOH . F 4 HOH A 26 53 53 HOH HOH . G 4 HOH B 1 5 5 HOH HOH . G 4 HOH B 2 6 6 HOH HOH . G 4 HOH B 3 7 7 HOH HOH . G 4 HOH B 4 8 8 HOH HOH . G 4 HOH B 5 9 9 HOH HOH . G 4 HOH B 6 10 10 HOH HOH . G 4 HOH B 7 13 13 HOH HOH . G 4 HOH B 8 14 14 HOH HOH . G 4 HOH B 9 15 15 HOH HOH . G 4 HOH B 10 16 16 HOH HOH . G 4 HOH B 11 17 17 HOH HOH . G 4 HOH B 12 19 19 HOH HOH . G 4 HOH B 13 21 21 HOH HOH . G 4 HOH B 14 22 22 HOH HOH . G 4 HOH B 15 23 23 HOH HOH . G 4 HOH B 16 24 24 HOH HOH . G 4 HOH B 17 31 31 HOH HOH . G 4 HOH B 18 32 32 HOH HOH . G 4 HOH B 19 33 33 HOH HOH . G 4 HOH B 20 41 41 HOH HOH . G 4 HOH B 21 42 42 HOH HOH . G 4 HOH B 22 44 44 HOH HOH . G 4 HOH B 23 45 45 HOH HOH . G 4 HOH B 24 46 46 HOH HOH . G 4 HOH B 25 47 47 HOH HOH . G 4 HOH B 26 48 48 HOH HOH . G 4 HOH B 27 51 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 DH9 . . . D 2 -18.332 -1.883 9.605 1 66.13 ? C22 DH9 61 B 1 HETATM 2 C C21 DH9 . . . D 2 -18.229 -2.009 8.082 1 66.74 ? C21 DH9 61 B 1 HETATM 3 C C20 DH9 . . . D 2 -17.215 -3.075 7.651 1 66.54 ? C20 DH9 61 B 1 HETATM 4 C C19 DH9 . . . D 2 -16.39 -2.564 6.464 1 67.11 ? C19 DH9 61 B 1 HETATM 5 C C18 DH9 . . . D 2 -16.151 -3.646 5.41 1 66.98 ? C18 DH9 61 B 1 HETATM 6 C C17 DH9 . . . D 2 -16.823 -3.27 4.088 1 67.64 ? C17 DH9 61 B 1 HETATM 7 C C2' DH9 . . . D 2 -16.22 -4.042 2.901 1 68.08 ? C2' DH9 61 B 1 HETATM 8 C C1' DH9 . . . D 2 -15.14 -3.208 2.163 1 67.82 ? C1' DH9 61 B 1 HETATM 9 O O1' DH9 . . . D 2 -14.884 -3.519 0.979 1 66.02 ? O1' DH9 61 B 1 HETATM 10 O O2' DH9 . . . D 2 -14.581 -2.281 2.799 1 69.07 ? O2' DH9 61 B 1 HETATM 11 C C3' DH9 . . . D 2 -17.333 -4.48 1.934 1 68.5 ? C3' DH9 61 B 1 HETATM 12 O O3' DH9 . . . D 2 -17.51 -3.488 0.913 1 69.37 ? O3' DH9 61 B 1 HETATM 13 C C4' DH9 . . . D 2 -17.011 -5.851 1.312 1 67.99 ? C4' DH9 61 B 1 HETATM 14 C C5' DH9 . . . D 2 -18.08 -6.291 0.29 1 67.99 ? C5' DH9 61 B 1 HETATM 15 O O4' DH9 . . . D 2 -17.584 -7.456 -0.458 1 69.56 ? O4' DH9 61 B 1 HETATM 16 C C23 DH9 . . . D 2 -16.831 -7.258 -1.598 1 70.16 ? C23 DH9 61 B 1 HETATM 17 O O5' DH9 . . . D 2 -16.642 -6.116 -2.03 1 70.98 ? O5' DH9 61 B 1 HETATM 18 C C24 DH9 . . . D 2 -16.229 -8.49 -2.337 1 70.24 ? C24 DH9 61 B 1 HETATM 19 C C26 DH9 . . . D 2 -15.351 -9.325 -1.38 1 69.37 ? C26 DH9 61 B 1 HETATM 20 C C27 DH9 . . . D 2 -14.698 -10.546 -2.058 1 68.59 ? C27 DH9 61 B 1 HETATM 21 C C28 DH9 . . . D 2 -15.499 -11.822 -1.815 1 68.3 ? C28 DH9 61 B 1 HETATM 22 C C29 DH9 . . . D 2 -13.261 -10.743 -1.569 1 67.71 ? C29 DH9 61 B 1 HETATM 23 N N1' DH9 . . . D 2 -15.438 -8.06 -3.513 1 71.2 ? N1' DH9 61 B 1 HETATM 24 C C25 DH9 . . . D 2 -15.838 -8.228 -4.779 1 72 ? C25 DH9 61 B 1 HETATM 25 O O6' DH9 . . . D 2 -16.896 -8.752 -5.136 1 72.73 ? O6' DH9 61 B 1 HETATM 26 C C6' DH9 . . . D 2 -19.443 -6.603 0.982 1 67.19 ? C6' DH9 61 B 1 HETATM 27 C C7' DH9 . . . D 2 -19.319 -7.697 2.057 1 66.08 ? C7' DH9 61 B 1 HETATM 28 C C8' DH9 . . . D 2 -20.308 -7.524 3.213 1 64.91 ? C8' DH9 61 B 1 HETATM 29 C C9' DH9 . . . D 2 -20.836 -8.888 3.68 1 63.71 ? C9' DH9 61 B 1 HETATM 30 C C10 DH9 . . . D 2 -20.03 -9.467 4.846 1 62.49 ? C10 DH9 61 B 1 HETATM 31 C C11 DH9 . . . D 2 -20.878 -9.538 6.121 1 62.09 ? C11 DH9 61 B 1 HETATM 32 C C12 DH9 . . . D 2 -20.255 -10.448 7.186 1 61.7 ? C12 DH9 61 B 1 HETATM 33 C C13 DH9 . . . D 2 -19.48 -9.637 8.235 1 62.4 ? C13 DH9 61 B 1 HETATM 34 C C14 DH9 . . . D 2 -19.381 -10.37 9.578 1 62.26 ? C14 DH9 61 B 1 HETATM 35 C C15 DH9 . . . D 2 -17.929 -10.754 9.885 1 62.54 ? C15 DH9 61 B 1 HETATM 36 C C16 DH9 . . . D 2 -17.383 -10.014 11.109 1 61.97 ? C16 DH9 61 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 405 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 36 #